Double superhelix model of high density lipoprotein

Journal of Biological Chemistry

Volumn 284, Issue 52, 2009, Pages 36605-36619

  Wu, Zhiping ^a   Gogonea, Valentin ^a,b   Lee, Xavier ^a   Wagner, Matthew A ^a   Li, Xi Min ^a   Huang, Ying ^a   Undurti, Arundhati ^a   May, Roland P ^c   Haertlein, Michael ^c   Moulin, Martine ^c   Gutsche, Irina ^d   Zaccai, Giuseppe ^c,e   DiDonato, Joseph A ^a   Hazen, Stanley L ^a  

^a LERNER RESEARCH INSTITUTE   (United States)

^b CLEVELAND STATE UNIVERSITY   (United States)

^c INSTITUT LAUE LANGEVIN   (France)

^d EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

^e CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL CHAIN; APOLIPOPROTEIN A-I (APOA-I); BIOLOGICAL PROCESS; BIOPHYSICAL TECHNIQUES; CARDIO-VASCULAR DISEASE; COMPUTATIONAL MODEL; CONTRAST VARIATION; DEUTERATIONS; ENERGY METABOLISM; GENERALIZED MECHANISMS; HIGH DENSITY LIPOPROTEIN; HIGH-DENSITY LIPOPROTEINS; HYDROGEN/DEUTERIUM EXCHANGE; INNATE IMMUNITY; LIPID CORES; LIPID PHASE; LIPID TRANSPORT; LOW RESOLUTION; SMALL ANGLE NEUTRON SCATTERING; STRUCTURAL ARRANGEMENT; STRUCTURAL DATA; THERAPEUTIC TARGETS; TIME-AVERAGED;

DEUTERIUM; MASS SPECTROMETRY; METABOLISM; NEUTRON SCATTERING;

PROTEINS;

APOLIPOPROTEIN A1; DEUTERIUM; HIGH DENSITY LIPOPROTEIN; HYDROGEN; LIPID; STEROL;

ARTICLE; BIOGENESIS; BIOPHYSICS; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA HELIX; ENERGY METABOLISM; HUMAN; INNATE IMMUNITY; LIPID COMPOSITION; LIPID TRANSPORT; MASS SPECTROMETRY; MATHEMATICAL MODEL; NEUTRON SCATTERING; PHASE TRANSITION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN CONTENT;

APOLIPOPROTEIN A-I; BIOLOGICAL TRANSPORT; HUMANS; LIPID METABOLISM; LIPIDS; LIPOPROTEINS, HDL; MODELS, MOLECULAR; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY;

EID: 73649094772     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.039537     Document Type: Article

References (81)

1. Tall, A. R., Yvan-Charvet, L., Terasaka, N., Pagler, T., and Wang, N. (2008) Cell Metab. 7, 365-375
2. Trigatti, B., Rigotti, A., and Krieger, M. (2000) Curr. Opin. Lipidol. 11, 123-131
3. Barter, P. J., and Rye, K. A. (2006) Curr. Opin. Lipidol. 17, 399-403
4. Rader, D. J. (2007) Nat. Clin. Pract. Cardiovasc. Med. 4, 102-109
5. Assmann, G., and Gotto, A. M., Jr. (2004) Circulation 109, III8-III14
6. Plump, A. S., Scott, C. J., and Breslow, J. L. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 9607-9611
7. Chapman, M. J. (2006) Pharmacol. Ther. 111, 893-908
8. Linsel-Nitschke, P., and Tall, A. R. (2005) Nat. Rev. Drug Discov. 4, 193-205
9. Nissen, S. E., Tsunoda, T., Tuzcu, E. M., Schoenhagen, P., Cooper, C. J., Yasin, M., Eaton, G. M., Lauer, M. A., Sheldon, W. S., Grines, C. L., Halpern, S., Crowe, T., Blankenship, J. C., and Kerensky, R. (2003) JAMA 290, 2292-2300
10. Shah, P. K., Nilsson, J., Kaul, S., Fishbein, M. C., Ageland, H., Hamsten, A., Johansson, J., Karpe, F., and Cercek, B. (1998) Circulation 97, 780-785
11. Navab, M., Anantharamaiah, G. M., Reddy, S. T., Hama, S., Hough, G., Grijalva, V. R., Wagner, A. C., Frank, J. S., Datta, G., Garber, D., and Fogelman, A. M. (2004) Circulation 109, 3215-3220
12. Tall, A. R. (2007) N. Engl. J. Med. 356, 1364-1366
13. Nissen, S. E., Tardif, J. C., Nicholls, S. J., Revkin, J. H., Shear, C. L., Duggan, W. T., Ruzyllo, W., Bachinsky, W. B., Lasala, G. P., Lasala, G. P., and Tuzcu, E. M. (2007) N. Engl. J. Med. 356, 1304-1316
14. Barter, P. J., Caulfield, M., Eriksson, M., Grundy, S. M., Kastelein, J. J., Komajda, M., Lopez-Sendon, J., Mosca, L., Tardif, J. C., Waters, D. D., Shear, C. L., Revkin, J. H., Buhr, K. A., Fisher, M. R., Tall, A. R., and Brewer, B. (2007) N. Engl. J. Med. 357, 2109-2122
15. Davidson, W. S., and Thompson, T. B. (2007) J. Biol. Chem. 282, 22249-22253
16. Thomas, M. J., Bhat, S., and Sorci-Thomas, M. G. (2008) J. Lipid Res. 49, 1875-1883
17. Phillips, J. C., Wriggers, W., Li, Z., Jonas, A., and Schulten, K. (1997) Biophys. J. 73, 2337-2346
18. Segrest, J. P., Jones, M. K., Klon, A. E., Sheldahl, C. J., Hellinger, M., De Loof, H., and Harvey, S. C. (1999) J. Biol. Chem. 274, 31755-31758
19. Koppaka, V., Silvestro, L., Engler, J. A., Brouillette, C. G., and Axelsen, P. H. (1999) J. Biol. Chem. 274, 14541-14544
20. Bhat, S., Sorci-Thomas, M. G., Alexander, E. T., Samuel, M. P., and Thomas, M. J. (2005) J. Biol. Chem. 280, 33015-33025
21. Martin, D. D., Budamagunta, M. S., Ryan, R. O., Voss, J. C., and Oda, M. N. (2006) J. Biol. Chem. 281, 20418-20426
22. Maiorano, J. N., Jandacek, R. J., Horace, E. M., and Davidson, W. S. (2004) Biochemistry 43, 11717-11726
23. Wu, Z., Wagner, M. A., Zheng, L., Parks, J. S., Shy, J. M., 3rd, Smith, J. D., Gogonea, V., and Hazen, S. L. (2007) Nat. Struct. Mol. Biol. 14, 861-868
24. Gingras, A. R., Bate, N., Goult, B. T., Hazelwood, L., Canestrelli, I., Grossmann, J. G., Liu, H., Putz, N. S., Roberts, G. C., Volkmann, N., Hanein, D., Barsukov, I. L., and Critchley, D. R. (2008) EMBO J. 27, 458-469
25. Radford, S. E., Dobson, C. M., and Evans, P. A. (1992) Nature 358, 302-307
26. Cowieson, N. P., Kobe, B., and Martin, J. L. (2008) Curr. Opin. Struct. Biol. 18, 617-622
27. Fleishman, S. J., Unger, V. M., and Ben-Tal, N. (2006) Trends Biochem. Sci. 31, 106-113
28. Shaw, J. A., Bobik, A., Murphy, A., Kanellakis, P., Blombery, P., Mukhamedova, N., Woollard, K., Lyon, S., Sviridov, D., and Dart, A. M. (2008) Circ. Res. 103, 1084-1091
29. Imaizumi, S., Miura, S., Nakamura, K., Kiya, Y., Uehara, Y., Zhang, B., Matsuo, Y., Urata, H., Ideishi, M., Rye, K. A., Sata, M., and Saku, K. (2008) J. Am. Coll. Cardiol. 51, 1604-1612
30. Ibanez, B., Vilahur, G., Cimmino, G., Speidl, W. S., Pinero, A., Choi, B. G., Zafar, M. U., Santos-Gallego, C. G., Krause, B., Badimon, L., Fuster, V., and Badimon, J. J. (2008) J. Am. Coll. Cardiol. 51, 1104-1109
31. Duong, P. T., Collins, H. L., Nickel, M., Lund-Katz, S., Rothblat, G. H., and Phillips, M. C. (2006) J. Lipid Res. 47, 832-843
32. Matz, C. E., and Jonas, A. (1982) J. Biol. Chem. 257, 4535-4540
33. Peng, D. Q., Wu, Z., Brubaker, G., Zheng, L., Settle, M., Gross, E., Kinter, M., Hazen, S. L., and Smith, J. D. (2005) J. Biol. Chem. 280, 33775-33784
34. Meilleur, F., Contzen, J., Myles, D. A., and Jung, C. (2004) Biochemistry 43, 8744-8753
35. Artero, J. B., Härtlein, M., McSweeney, S., and Timmins, P. (2005) Acta Crystallogr. D Biol. Crystallogr. 61, 1541-1549
36. Niemann, H. H., Petoukhov, M. V., Härtlein, M., Moulin, M., Gherardi, E., Timmins, P., Heinz, D. W., and Svergun, D. I. (2008) J. Mol. Biol. 377, 489-500
37. Baker, P. W., Rye, K. A., Gamble, J. R., Vadas, M. A., and Barter, P. J. (2000) J. Lipid Res. 41, 1261-1267
38. Andrade, M. A., Chacón, P., Merelo, J. J., and Morán, F. (1993) Protein Eng. 6, 383-390
39. Jin, L., Shieh, J. J., Grabbe, E., Adimoolam, S., Durbin, D., and Jonas, A. (1999) Biochemistry 38, 15659-15665
40. Bolton, A. E., and Hunter, W. M. (1973) Biochem. J. 133, 529-539
41. Gu, X., Trigatti, B., Xu, S., Acton, S., Babitt, J., and Krieger, M. (1998) J. Biol. Chem. 273, 26338-26348
42. Johs, A., Hammel, M., Waldner, I., May, R. P., Laggner, P., and Prassl, R. (2006) J. Biol. Chem. 281, 19732-19739
43. Guinier, A. (1939) Ann. Phys. 12, 161-237
44. Zaccaï, G., and Jacrot, B. (1983) Annu. Rev. Biophys. Bioeng. 12, 139-157
45. Svergun, D. I. (1999) Biophys. J. 76, 2879-2886
46. Konarev, P. V., Sokolova, A. V., Koch M. H. J., and Svergun, D. I. (2003) J. Appl. Crystallogr. 1277-1282
47. Petoukhov, M. K., P. V., Kikhney, A. G., and Svergun, D. (2007) J. Appl. Crystallogr. 40, S223-S228
48. Silva, R. A., Hilliard, G. M., Li, L., Segrest, J. P., and Davidson, W. S. (2005) Biochemistry 44, 8600-8607
49. Li, H. H., Lyles, D. S., Pan, W., Alexander, E., Thomas, M. J., and Sorci-Thomas, M. G. (2002) J. Biol. Chem. 277, 39093-39101
50. Miranker, A., Robinson, C. V., Radford, S. E., Aplin, R. T., and Dobson, C. M. (1993) Science 262, 896-900
51. Chung, E. W., Nettleton, E. J., Morgan, C. J., Gross, M., Miranker, A., Radford, S. E., Dobson, C. M., and Robinson, C. V. (1997) Protein Sci. 6, 1316-1324
52. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723
53. Sali, A., and Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815
54. Merzel, F., and Smith, J. C. (2002) Acta Crystallogr. D Biol. Crystallogr. 58, 242-249
55. Svergun, D. I., Richard, S., Koch, M. H., Sayers, Z., Kuprin, S., and Zaccai, G. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 2267-2272
56. Jorgensen, W. L., and Tirado-Rives, J. (1988) J. Am. Chem. Soc. 110, 1657-1666
57. Lindahl, E., Hess, B., and van der Spoel, D. (2001) J. Mol. Mod. 7, 306
58. Serdyuk, I. N., Zaccai, N. R., and Zaccai, J. (eds) (2007) Methods in Molecular Biophysics, p. 776, Cambridge University Press, Cambridge, UK
59. Pardon, J. F., Worcester, D. L., Wooley, J. C., Cotter, R. I., Lilley, D. M., and Richards, R. M. (1977) Nucleic Acids Res. 4, 3199-3214
60. Ramakrishnan, V. (1986) Science 231, 1562-1564
61. May, R. P., Nowotny, V., Nowotny, P., Voss, H., and Nierhaus, K. H. (1992) EMBO J. 11, 373-378
62. Willumeit, R., Diedrich, G., Forthmann, S., Beckmann, J., May, R. P., Stuhrmann, H. B., and Nierhaus, K. H. (2001) Biochim. Biophys. Acta 1520, 7-20
63. Catte, A., Patterson, J. C., Jones, M. K., Jerome, W. G., Bashtovyy, D., Su, Z., Gu, F., Chen, J., Aliste, M. P., Harvey, S. C., Li, L., Weinstein, G., and Segrest, J. P. (2006) Biophys. J. 90, 4345-4360
64. Zhu, H. L., and Atkinson, D. (2004) Biochemistry 43, 13156-13164
65. Rogers, D. P., Roberts, L. M., Lebowitz, J., Engler, J. A., and Brouillette, C. G. (1998) Biochemistry 37, 945-955
66. Atkinson, D., Small, D. M., and Shipley, G. G. (1980) Ann. N.Y. Acad. Sci. 348, 284-298
67. Shih, A. Y., Arkhipov, A., Freddolino, P. L., Sligar, S. G., and Schulten, K. (2007) J. Phys. Chem. B 111, 11095-11104
68. Denisov, I. G., Grinkova, Y. V., Lazarides, A. A., and Sligar, S. G. (2004) J. Am. Chem. Soc. 126, 3477-3487
69. Peters-Libeu, C. A., Newhouse, Y., Hall, S. C., Witkowska, H. E., and Weisgraber, K. H. (2007) J. Lipid Res. 48, 1035-1044
70. Borhani, D. W., Rogers, D. P., Engler, J. A., and Brouillette, C. G. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12291-12296
71. Tardif, J. C., Grégoire, J., L'Allier, P. L., Ibrahim, R., Lespérance, J., Heinonen, T. M., Kouz, S., Berry, C., Basser, R., Lavoie, M. A., Guertin, M. C., and Rodés-Cabau, J. (2007) JAMA 297, 1675-1682
72. Nicholls, S. J., Cutri, B., Worthley, S. G., Kee, P., Rye, K. A., Bao, S., and Barter, P. J. (2005) Arterioscler. Thromb. Vasc. Biol. 25, 2416-2421
73. Ajees, A. A., Anantharamaiah, G. M., Mishra, V. K., Hussain, M. M., and Murthy, H. M. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 2126-2131
74. Peng, D. Q., Brubaker, G., Wu, Z., Zheng, L., Willard, B., Kinter, M., Hazen, S. L., and Smith, J. D. (2008) Arterioscler. Thromb. Vasc. Biol. 28, 2063-2070
75. Shih, A. Y., Sligar, S. G., and Schulten, K. (2008) Biophys. J. 94, L87-89
76. Rye, K. A., Garrety, K. H., and Barter, P. J. (1992) J. Lipid Res. 33, 215-224
77. Alexander, E. T., Bhat, S., Thomas, M. J., Weinberg, R. B., Cook, V. R., Bharadwaj, M. S., and Sorci-Thomas, M. (2005) Biochemistry 44, 5409-5419
78. Koukos, G., Chroni, A., Duka, A., Kardassis, D., and Zannis, V. I. (2007) Biochem. J. 406, 167-174
79. Black, S. D., and Mould, D. R. (1991) Anal. Biochem. 193, 72-82
80. Li, H. H., Thomas, M. J., Pan, W., Alexander, E., Samuel, M., and Sorci-Thomas, M. G. (2001) J. Lipid Res. 42, 2084-2091
81. Bhat, S., Sorci-Thomas, M. G., Tuladhar, R., Samuel, M. P., and Thomas, M. J. (2007) Biochemistry 46, 7811-7821