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Volumn 32, Issue 4, 2009, Pages 822-833

Tandem repeat distribution of gene transcripts in three plant families

Author keywords

Comparative genomics; EST; Molecular markers; SSR

Indexed keywords

ARTICLE; COMPUTER MODEL; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENOME SIZE; MICROSATELLITE MARKER; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; PLANT GENE; PLANT GENETICS; PLANT GENOME; PREDICTION; SPECIES TRANSLOCATION; TANDEM REPEAT;

EID: 73449116042     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572009005000091     Document Type: Article
Times cited : (23)

References (39)
  • 1
    • 34548077860 scopus 로고    scopus 로고
    • Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
    • Asp T, Frei UK, Didion T, Nielsen KK and Lübberstedt T (2007) Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol 7:36.
    • (2007) BMC Plant Biol , vol.7 , pp. 36
    • Asp, T.1    Frei, U.K.2    Didion, T.3    Nielsen, K.K.4    Lübberstedt, T.5
  • 2
    • 0030093586 scopus 로고    scopus 로고
    • Evolution of simple sequence repeats
    • Bell GI (1996) Evolution of simple sequence repeats. Comput Chem 20:41-48.
    • (1996) Comput Chem , vol.20 , pp. 41-48
    • Bell, G.I.1
  • 3
    • 0033782605 scopus 로고    scopus 로고
    • Computational and experimental characterization of physically clustered simple sequence repeats in plants
    • Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D and Waugh R (2000) Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156:847-854.
    • (2000) Genetics , vol.156 , pp. 847-854
    • Cardle, L.1    Ramsay, L.2    Milbourne, D.3    Macaulay, M.4    Marshall, D.5    Waugh, R.6
  • 4
    • 0034101197 scopus 로고    scopus 로고
    • The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology?
    • Conne B, Stutz A and Vassalli JD (2000) The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology? Nat Med 6:637-641.
    • (2000) Nat Med , vol.6 , pp. 637-641
    • Conne, B.1    Stutz, A.2    Vassalli, J.D.3
  • 5
    • 0035026747 scopus 로고    scopus 로고
    • Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum
    • Cordeiro GM, Casu R, McIntyre CL, Manners JM and Henry RJ (2001) Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci 160:1115-1123.
    • (2001) Plant Sci , vol.160 , pp. 1115-1123
    • Cordeiro, G.M.1    Casu, R.2    McIntyre, C.L.3    Manners, J.M.4    Henry, R.J.5
  • 6
    • 0030841672 scopus 로고    scopus 로고
    • Expansion of a CUG trinucleotide repeat in the 3'untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts
    • Davis BM, McCurrach ME, Taneja KL, Singer RH and Housman DE (1997) Expansion of a CUG trinucleotide repeat in the 3'untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts. Proc Natl Acad Sci USA 94:7388-7393.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7388-7393
    • Davis, B.M.1    McCurrach, M.E.2    Taneja, K.L.3    Singer, R.H.4    Housman, D.E.5
  • 8
    • 0034695575 scopus 로고    scopus 로고
    • DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli
    • Iyer RR, Pluciennik A, Rosche WA, Sinden RR and Wells RD (2000) DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli. J Biol Chem 275:2174-2184.
    • (2000) J Biol Chem , vol.275 , pp. 2174-2184
    • Iyer, R.R.1    Pluciennik, A.2    Rosche, W.A.3    Sinden, R.R.4    Wells, R.D.5
  • 9
    • 33645731206 scopus 로고    scopus 로고
    • Analysis of microsatellites in citrus unigenes
    • Jiang D, Zhong GY and Hong QB (2006) Analysis of microsatellites in citrus unigenes. Acta Genetica Sinica 33:345-353.
    • (2006) Acta Genetica Sinica , vol.33 , pp. 345-353
    • Jiang, D.1    Zhong, G.Y.2    Hong, Q.B.3
  • 10
    • 20444491651 scopus 로고    scopus 로고
    • Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs
    • Jung S, Abbott A, Jesudurai C, Tomkins J and Main D (2005) Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs. Funct Integr Genomics 5:136-143.
    • (2005) Funct Integr Genomics , vol.5 , pp. 136-143
    • Jung, S.1    Abbott, A.2    Jesudurai, C.3    Tomkins, J.4    Main, D.5
  • 11
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • Kantety RV, La Rota M, Matthews DE and Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510.
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 12
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y and King DG (2006) Simple sequence repeats as advantageous mutators in evolution. Trends Genet 22:253-259.
    • (2006) Trends Genet , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 13
    • 33645754932 scopus 로고    scopus 로고
    • Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
    • Kumpatla SP and Mukhopadhyay S (2005) Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species. Genome 48:985-998.
    • (2005) Genome , vol.48 , pp. 985-998
    • Kumpatla, S.P.1    Mukhopadhyay, S.2
  • 14
    • 25444467752 scopus 로고    scopus 로고
    • Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
    • La Rota M, Kantety RV, Yu JK and Sorrells ME (2005) Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6:23.
    • (2005) BMC Genomics , vol.6 , pp. 23
    • La Rota, M.1    Kantety, R.V.2    Yu, J.K.3    Sorrells, M.E.4
  • 15
    • 33745033519 scopus 로고    scopus 로고
    • Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
    • Lawson MJ and Zhang L (2006) Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol 7:R14.
    • (2006) Genome Biol , vol.7
    • Lawson, M.J.1    Zhang, L.2
  • 16
    • 15244344323 scopus 로고    scopus 로고
    • Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes
    • Li B, Xia Q, Lu C, Zhou Z and Xiang Z (2004b) Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes. Genom Proteom Bioinf 2:24-31.
    • (2004) Genom Proteom Bioinf , vol.2 , pp. 24-31
    • Li, B.1    Xia, Q.2    Lu, C.3    Zhou, Z.4    Xiang, Z.5
  • 17
    • 0036897944 scopus 로고    scopus 로고
    • Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review
    • Li YC, Korol AB, Fahima T, Beiles A and Nevo E (2002) Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review. Mol Ecol 11:2453-2465.
    • (2002) Mol Ecol , vol.11 , pp. 2453-2465
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Beiles, A.4    Nevo, E.5
  • 18
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function, and evolution
    • Li YC, Korol AB, Fahima T and Nevo E (2004a) Microsatellites within genes: Structure, function, and evolution. Mol Biol Evol 21:991-1007.
    • (2004) Mol Biol Evol , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 19
    • 49349085907 scopus 로고    scopus 로고
    • Maia LC da, Palmieri DA, de Souza VQ, Kopp MM, de Carvalho FI and Costa de Oliveira A (2008) SSR Locator: Tool for simple sequence repeat discovery integrated with primer design and PCR simulation. Int J Plant Genomics 412696.
    • Maia LC da, Palmieri DA, de Souza VQ, Kopp MM, de Carvalho FI and Costa de Oliveira A (2008) SSR Locator: Tool for simple sequence repeat discovery integrated with primer design and PCR simulation. Int J Plant Genomics 412696.
  • 21
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M and Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182.
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 22
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • Morgante M, Hanafey M and Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30:194-200.
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 26
    • 15844400066 scopus 로고    scopus 로고
    • Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers
    • Peng JH and Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5:80-96.
    • (2005) Funct Integr Genomics , vol.5 , pp. 80-96
    • Peng, J.H.1    Lapitan, N.L.2
  • 27
    • 0032076126 scopus 로고    scopus 로고
    • Disruption of splicing regulated by a CUG-binding protein in yotonic dystrophy
    • Philips AV, Timchenko LT and Cooper TA (1998) Disruption of splicing regulated by a CUG-binding protein in yotonic dystrophy. Science 280:737-741.
    • (1998) Science , vol.280 , pp. 737-741
    • Philips, A.V.1    Timchenko, L.T.2    Cooper, T.A.3
  • 28
    • 0037268258 scopus 로고    scopus 로고
    • Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions
    • Subramanian S, Mishra RK and Singh L (2003) Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions. Genome Biol 4:R13.
    • (2003) Genome Biol , vol.4
    • Subramanian, S.1    Mishra, R.K.2    Singh, L.3
  • 29
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S and McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441-1452.
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 30
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney W and Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422.
    • (2003) Theor Appl Genet , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, W.3    Graner, A.4
  • 31
    • 0030861573 scopus 로고    scopus 로고
    • Expansion of the myotonic dystrophy CTG repeat reduces expression of the flanking DMAHP gene
    • Thornton CA, Wymer JP, Simmons Z, McClain C and Moxley RT (1997) Expansion of the myotonic dystrophy CTG repeat reduces expression of the flanking DMAHP gene. Nat Genet 16:407-409.
    • (1997) Nat Genet , vol.16 , pp. 407-409
    • Thornton, C.A.1    Wymer, J.P.2    Simmons, Z.3    McClain, C.4    Moxley, R.T.5
  • 32
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • Tóth G, Gáspári Z and Jurka J (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 10:967-981.
    • (2000) Genome Res , vol.10 , pp. 967-981
    • Tóth, G.1    Gáspári, Z.2    Jurka, J.3
  • 33
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • Varshney RK, Graner A and Sorrells ME (2005) Genic microsatellite markers in plants: Features and applications. Trends Biotechnol 23:48-55.
    • (2005) Trends Biotechnol , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 34
    • 0036428541 scopus 로고    scopus 로고
    • In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    • Varshney RK, Thiel T, Stein N, Langridge P and Graner A (2002) In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. Cell Mol Biol Lett 7:537-546.
    • (2002) Cell Mol Biol Lett , vol.7 , pp. 537-546
    • Varshney, R.K.1    Thiel, T.2    Stein, N.3    Langridge, P.4    Graner, A.5
  • 35
    • 33749824228 scopus 로고    scopus 로고
    • Advances in cereal genomics and applications in crop breeding
    • Varshney RK, Hoisington DA and Tyagi AK (2006) Advances in cereal genomics and applications in crop breeding. Trends Biotechnol 24:490-499.
    • (2006) Trends Biotechnol , vol.24 , pp. 490-499
    • Varshney, R.K.1    Hoisington, D.A.2    Tyagi, A.K.3
  • 36
    • 4043140958 scopus 로고    scopus 로고
    • Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
    • Yu JK, Dake TM, Singh S, Benscher D, Li W, Gill B and Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818.
    • (2004) Genome , vol.47 , pp. 805-818
    • Yu, J.K.1    Dake, T.M.2    Singh, S.3    Benscher, D.4    Li, W.5    Gill, B.6    Sorrells, M.E.7
  • 37
    • 2442687890 scopus 로고    scopus 로고
    • Preference of simple sequence repeats in coding and non coding regions of Arabidopsis thaliana
    • Zhang L, Yuan D, Yu S, Li Z, Cao Y, Miao Z, Qian H and Tang K (2004) Preference of simple sequence repeats in coding and non coding regions of Arabidopsis thaliana. Bioinformatics 20:1081-1086.
    • (2004) Bioinformatics , vol.20 , pp. 1081-1086
    • Zhang, L.1    Yuan, D.2    Yu, S.3    Li, Z.4    Cao, Y.5    Miao, Z.6    Qian, H.7    Tang, K.8
  • 38
    • 33846805782 scopus 로고    scopus 로고
    • Conservation of noncoding microsatellites in plants: Implication for gene regulation
    • Zhang L, Zuo K, Zhang F, Cao Y, Wang J, Zhang Y, Sun X and Tang K (2006a) Conservation of noncoding microsatellites in plants: Implication for gene regulation. BMC Genomics 7:323.
    • (2006) BMC Genomics , vol.7 , pp. 323
    • Zhang, L.1    Zuo, K.2    Zhang, F.3    Cao, Y.4    Wang, J.5    Zhang, Y.6    Sun, X.7    Tang, K.8
  • 39
    • 33845422549 scopus 로고    scopus 로고
    • Distributional gradient of amino acid repeats in plant proteins
    • Zhang L, Yu S, Cao Y, Wang J, Zuo K, Qin J and Tang K (2006b) Distributional gradient of amino acid repeats in plant proteins. Genome 49:900-905.
    • (2006) Genome , vol.49 , pp. 900-905
    • Zhang, L.1    Yu, S.2    Cao, Y.3    Wang, J.4    Zuo, K.5    Qin, J.6    Tang, K.7


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