-
1
-
-
34548077860
-
Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
-
Asp T, Frei UK, Didion T, Nielsen KK and Lübberstedt T (2007) Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol 7:36.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 36
-
-
Asp, T.1
Frei, U.K.2
Didion, T.3
Nielsen, K.K.4
Lübberstedt, T.5
-
2
-
-
0030093586
-
Evolution of simple sequence repeats
-
Bell GI (1996) Evolution of simple sequence repeats. Comput Chem 20:41-48.
-
(1996)
Comput Chem
, vol.20
, pp. 41-48
-
-
Bell, G.I.1
-
3
-
-
0033782605
-
Computational and experimental characterization of physically clustered simple sequence repeats in plants
-
Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D and Waugh R (2000) Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156:847-854.
-
(2000)
Genetics
, vol.156
, pp. 847-854
-
-
Cardle, L.1
Ramsay, L.2
Milbourne, D.3
Macaulay, M.4
Marshall, D.5
Waugh, R.6
-
4
-
-
0034101197
-
The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology?
-
Conne B, Stutz A and Vassalli JD (2000) The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology? Nat Med 6:637-641.
-
(2000)
Nat Med
, vol.6
, pp. 637-641
-
-
Conne, B.1
Stutz, A.2
Vassalli, J.D.3
-
5
-
-
0035026747
-
Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum
-
Cordeiro GM, Casu R, McIntyre CL, Manners JM and Henry RJ (2001) Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci 160:1115-1123.
-
(2001)
Plant Sci
, vol.160
, pp. 1115-1123
-
-
Cordeiro, G.M.1
Casu, R.2
McIntyre, C.L.3
Manners, J.M.4
Henry, R.J.5
-
6
-
-
0030841672
-
Expansion of a CUG trinucleotide repeat in the 3'untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts
-
Davis BM, McCurrach ME, Taneja KL, Singer RH and Housman DE (1997) Expansion of a CUG trinucleotide repeat in the 3'untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts. Proc Natl Acad Sci USA 94:7388-7393.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 7388-7393
-
-
Davis, B.M.1
McCurrach, M.E.2
Taneja, K.L.3
Singer, R.H.4
Housman, D.E.5
-
7
-
-
34547526440
-
Genomic distribution of simple sequence repeats in Brassica rapa
-
Hong CP, Piao ZY, Kang TW, Batley J, Yang TJ, Hur YK, Bhak J, Park BS, Edwards D and Lim YP (2007) Genomic distribution of simple sequence repeats in Brassica rapa. Mol Cells 23:349-356.
-
(2007)
Mol Cells
, vol.23
, pp. 349-356
-
-
Hong, C.P.1
Piao, Z.Y.2
Kang, T.W.3
Batley, J.4
Yang, T.J.5
Hur, Y.K.6
Bhak, J.7
Park, B.S.8
Edwards, D.9
Lim, Y.P.10
-
8
-
-
0034695575
-
DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli
-
Iyer RR, Pluciennik A, Rosche WA, Sinden RR and Wells RD (2000) DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli. J Biol Chem 275:2174-2184.
-
(2000)
J Biol Chem
, vol.275
, pp. 2174-2184
-
-
Iyer, R.R.1
Pluciennik, A.2
Rosche, W.A.3
Sinden, R.R.4
Wells, R.D.5
-
10
-
-
20444491651
-
Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs
-
Jung S, Abbott A, Jesudurai C, Tomkins J and Main D (2005) Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs. Funct Integr Genomics 5:136-143.
-
(2005)
Funct Integr Genomics
, vol.5
, pp. 136-143
-
-
Jung, S.1
Abbott, A.2
Jesudurai, C.3
Tomkins, J.4
Main, D.5
-
11
-
-
0036010770
-
Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
-
Kantety RV, La Rota M, Matthews DE and Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510.
-
(2002)
Plant Mol Biol
, vol.48
, pp. 501-510
-
-
Kantety, R.V.1
La Rota, M.2
Matthews, D.E.3
Sorrells, M.E.4
-
12
-
-
33646130830
-
Simple sequence repeats as advantageous mutators in evolution
-
Kashi Y and King DG (2006) Simple sequence repeats as advantageous mutators in evolution. Trends Genet 22:253-259.
-
(2006)
Trends Genet
, vol.22
, pp. 253-259
-
-
Kashi, Y.1
King, D.G.2
-
13
-
-
33645754932
-
Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
-
Kumpatla SP and Mukhopadhyay S (2005) Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species. Genome 48:985-998.
-
(2005)
Genome
, vol.48
, pp. 985-998
-
-
Kumpatla, S.P.1
Mukhopadhyay, S.2
-
14
-
-
25444467752
-
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
-
La Rota M, Kantety RV, Yu JK and Sorrells ME (2005) Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6:23.
-
(2005)
BMC Genomics
, vol.6
, pp. 23
-
-
La Rota, M.1
Kantety, R.V.2
Yu, J.K.3
Sorrells, M.E.4
-
15
-
-
33745033519
-
Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
-
Lawson MJ and Zhang L (2006) Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol 7:R14.
-
(2006)
Genome Biol
, vol.7
-
-
Lawson, M.J.1
Zhang, L.2
-
16
-
-
15244344323
-
Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes
-
Li B, Xia Q, Lu C, Zhou Z and Xiang Z (2004b) Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes. Genom Proteom Bioinf 2:24-31.
-
(2004)
Genom Proteom Bioinf
, vol.2
, pp. 24-31
-
-
Li, B.1
Xia, Q.2
Lu, C.3
Zhou, Z.4
Xiang, Z.5
-
17
-
-
0036897944
-
Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review
-
Li YC, Korol AB, Fahima T, Beiles A and Nevo E (2002) Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review. Mol Ecol 11:2453-2465.
-
(2002)
Mol Ecol
, vol.11
, pp. 2453-2465
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
18
-
-
2442701496
-
Microsatellites within genes: Structure, function, and evolution
-
Li YC, Korol AB, Fahima T and Nevo E (2004a) Microsatellites within genes: Structure, function, and evolution. Mol Biol Evol 21:991-1007.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 991-1007
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Nevo, E.4
-
19
-
-
49349085907
-
-
Maia LC da, Palmieri DA, de Souza VQ, Kopp MM, de Carvalho FI and Costa de Oliveira A (2008) SSR Locator: Tool for simple sequence repeat discovery integrated with primer design and PCR simulation. Int J Plant Genomics 412696.
-
Maia LC da, Palmieri DA, de Souza VQ, Kopp MM, de Carvalho FI and Costa de Oliveira A (2008) SSR Locator: Tool for simple sequence repeat discovery integrated with primer design and PCR simulation. Int J Plant Genomics 412696.
-
-
-
-
20
-
-
0036928793
-
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.)
-
McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) DNA Res 9:199-207.
-
(2002)
DNA Res
, vol.9
, pp. 199-207
-
-
McCouch, S.R.1
Teytelman, L.2
Xu, Y.3
Lobos, K.B.4
Clare, K.5
Walton, M.6
Fu, B.7
Maghirang, R.8
Li, Z.9
Xing, Y.10
-
21
-
-
0027357965
-
PCR-amplified microsatellites as markers in plant genetics
-
Morgante M and Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182.
-
(1993)
Plant J
, vol.3
, pp. 175-182
-
-
Morgante, M.1
Olivieri, A.M.2
-
22
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante M, Hanafey M and Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30:194-200.
-
(2002)
Nat Genet
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanafey, M.2
Powell, W.3
-
23
-
-
4544376233
-
Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)
-
Nicot N, Chiquet V, Gandon B, Amilhat L, Legeai F, Leroy P, Bernard M and Sourdille P (2004) Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs). Theor Appl Genet 109:800-805.
-
(2004)
Theor Appl Genet
, vol.109
, pp. 800-805
-
-
Nicot, N.1
Chiquet, V.2
Gandon, B.3
Amilhat, L.4
Legeai, F.5
Leroy, P.6
Bernard, M.7
Sourdille, P.8
-
24
-
-
38049171153
-
Frequency and distribution of microsatellites from ESTs of citrus
-
Palmieri DA, Novelli VM, Bastianel M, Cristofani M, Monge GA, Carlos EF, Oliveira AC and Machado MA (2007) Frequency and distribution of microsatellites from ESTs of citrus. Genet Mol Biol 30:1009-1018.
-
(2007)
Genet Mol Biol
, vol.30
, pp. 1009-1018
-
-
Palmieri, D.A.1
Novelli, V.M.2
Bastianel, M.3
Cristofani, M.4
Monge, G.A.5
Carlos, E.F.6
Oliveira, A.C.7
Machado, M.A.8
-
25
-
-
33644765129
-
Unigene derived microsatellite markers for the cereal genomes
-
Parida SK, Anand Raj Kumar K, Dalal V, Singh NK and Mohapatra T (2006) Unigene derived microsatellite markers for the cereal genomes. Theor Appl Genet 112:808-817.
-
(2006)
Theor Appl Genet
, vol.112
, pp. 808-817
-
-
Parida, S.K.1
Anand2
Raj Kumar, K.3
Dalal, V.4
Singh, N.K.5
Mohapatra, T.6
-
26
-
-
15844400066
-
Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers
-
Peng JH and Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5:80-96.
-
(2005)
Funct Integr Genomics
, vol.5
, pp. 80-96
-
-
Peng, J.H.1
Lapitan, N.L.2
-
27
-
-
0032076126
-
Disruption of splicing regulated by a CUG-binding protein in yotonic dystrophy
-
Philips AV, Timchenko LT and Cooper TA (1998) Disruption of splicing regulated by a CUG-binding protein in yotonic dystrophy. Science 280:737-741.
-
(1998)
Science
, vol.280
, pp. 737-741
-
-
Philips, A.V.1
Timchenko, L.T.2
Cooper, T.A.3
-
28
-
-
0037268258
-
Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions
-
Subramanian S, Mishra RK and Singh L (2003) Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions. Genome Biol 4:R13.
-
(2003)
Genome Biol
, vol.4
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
29
-
-
0034882994
-
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
-
Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S and McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441-1452.
-
(2001)
Genome Res
, vol.11
, pp. 1441-1452
-
-
Temnykh, S.1
DeClerck, G.2
Lukashova, A.3
Lipovich, L.4
Cartinhour, S.5
McCouch, S.6
-
30
-
-
0037854629
-
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
-
Thiel T, Michalek W, Varshney W and Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422.
-
(2003)
Theor Appl Genet
, vol.106
, pp. 411-422
-
-
Thiel, T.1
Michalek, W.2
Varshney, W.3
Graner, A.4
-
31
-
-
0030861573
-
Expansion of the myotonic dystrophy CTG repeat reduces expression of the flanking DMAHP gene
-
Thornton CA, Wymer JP, Simmons Z, McClain C and Moxley RT (1997) Expansion of the myotonic dystrophy CTG repeat reduces expression of the flanking DMAHP gene. Nat Genet 16:407-409.
-
(1997)
Nat Genet
, vol.16
, pp. 407-409
-
-
Thornton, C.A.1
Wymer, J.P.2
Simmons, Z.3
McClain, C.4
Moxley, R.T.5
-
32
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: Survey and analysis
-
Tóth G, Gáspári Z and Jurka J (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 10:967-981.
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
33
-
-
11344276529
-
Genic microsatellite markers in plants: Features and applications
-
Varshney RK, Graner A and Sorrells ME (2005) Genic microsatellite markers in plants: Features and applications. Trends Biotechnol 23:48-55.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 48-55
-
-
Varshney, R.K.1
Graner, A.2
Sorrells, M.E.3
-
34
-
-
0036428541
-
In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
-
Varshney RK, Thiel T, Stein N, Langridge P and Graner A (2002) In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. Cell Mol Biol Lett 7:537-546.
-
(2002)
Cell Mol Biol Lett
, vol.7
, pp. 537-546
-
-
Varshney, R.K.1
Thiel, T.2
Stein, N.3
Langridge, P.4
Graner, A.5
-
35
-
-
33749824228
-
Advances in cereal genomics and applications in crop breeding
-
Varshney RK, Hoisington DA and Tyagi AK (2006) Advances in cereal genomics and applications in crop breeding. Trends Biotechnol 24:490-499.
-
(2006)
Trends Biotechnol
, vol.24
, pp. 490-499
-
-
Varshney, R.K.1
Hoisington, D.A.2
Tyagi, A.K.3
-
36
-
-
4043140958
-
Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
-
Yu JK, Dake TM, Singh S, Benscher D, Li W, Gill B and Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818.
-
(2004)
Genome
, vol.47
, pp. 805-818
-
-
Yu, J.K.1
Dake, T.M.2
Singh, S.3
Benscher, D.4
Li, W.5
Gill, B.6
Sorrells, M.E.7
-
37
-
-
2442687890
-
Preference of simple sequence repeats in coding and non coding regions of Arabidopsis thaliana
-
Zhang L, Yuan D, Yu S, Li Z, Cao Y, Miao Z, Qian H and Tang K (2004) Preference of simple sequence repeats in coding and non coding regions of Arabidopsis thaliana. Bioinformatics 20:1081-1086.
-
(2004)
Bioinformatics
, vol.20
, pp. 1081-1086
-
-
Zhang, L.1
Yuan, D.2
Yu, S.3
Li, Z.4
Cao, Y.5
Miao, Z.6
Qian, H.7
Tang, K.8
-
38
-
-
33846805782
-
Conservation of noncoding microsatellites in plants: Implication for gene regulation
-
Zhang L, Zuo K, Zhang F, Cao Y, Wang J, Zhang Y, Sun X and Tang K (2006a) Conservation of noncoding microsatellites in plants: Implication for gene regulation. BMC Genomics 7:323.
-
(2006)
BMC Genomics
, vol.7
, pp. 323
-
-
Zhang, L.1
Zuo, K.2
Zhang, F.3
Cao, Y.4
Wang, J.5
Zhang, Y.6
Sun, X.7
Tang, K.8
-
39
-
-
33845422549
-
Distributional gradient of amino acid repeats in plant proteins
-
Zhang L, Yu S, Cao Y, Wang J, Zuo K, Qin J and Tang K (2006b) Distributional gradient of amino acid repeats in plant proteins. Genome 49:900-905.
-
(2006)
Genome
, vol.49
, pp. 900-905
-
-
Zhang, L.1
Yu, S.2
Cao, Y.3
Wang, J.4
Zuo, K.5
Qin, J.6
Tang, K.7
|