SCOPUS 정보 검색 플랫폼

Plant Molecular Biology

Volumn 48, Issue 5-6, 2002, Pages 501-510

Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat

(4) Kantety, Ramesh V a La Rota, Mauricio b Matthews, David E a Sorrells, Mark E a

a Department of Obstetrics Gynecology (United States)

b 409 Bradfield Hall ^*

Author keywords

Comparative genomics; Comparative mapping; EST; EST clustering; SSR

Indexed keywords

CROPS; DATA MINING; DNA SEQUENCES; FUNCTIONAL ASSESSMENT; MAPPING;

EXPRESSED SEQUENCE TAGS;

MOLECULAR BIOLOGY;

EMBRYOPHYTA; HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM; ZEA MAYS;

MICROSATELLITE DNA;

ARTICLE; BARLEY; BIOLOGY; EXPRESSED SEQUENCE TAG; FACTUAL DATABASE; GENETIC MARKER; GENETICS; MAIZE; POACEAE; RICE; SEQUENCE HOMOLOGY; WHEAT;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; EXPRESSED SEQUENCE TAGS; GENETIC MARKERS; HORDEUM; MICROSATELLITE REPEATS; ORYZA SATIVA; POACEAE; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRITICUM; ZEA MAYS;

EID: 0036010770 PISSN: 01674412 EISSN: None Source Type: Journal
DOI: 10.1023/A:1014875206165 Document Type: Article

Times cited : (596)

References (43)

1
- 0030801002
- Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
- (1997) Nucl. Acids Res. , vol.25 , pp. 3389-3402
- Altschul, S.F.¹ Madden, T.L.² Schäffer, A.A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.J.⁷

2
- 0030980792
- Microsatellites and a single nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm
- (1997) Theor. Appl. Genet. , vol.94 , pp. 773-781
- Ayers, N.M.¹ McClung, A.M.² Larkin, P.D.³ Bligh, H.F.J.⁴ Jones, C.A.⁵ Park, W.D.⁶

3
- 0033794780
- An ordered comparative map of the cattle and human genomes
- (2000) Genome Res. , vol.10 , pp. 1359-1368
- Band, M.R.¹ Larson, J.H.² Rebeiz, M.³ Green, C.A.⁴ Heyen, D.W.⁵ Donovan, J.⁶ Windish, R.⁷ Steining, C.⁸ Mahyuddin, P.⁹ Womack, J.E.¹⁰ Lewin, H.A.¹¹

4
- 0029240189
- Barley microsatellites: Allele variation and mapping
- (1995) Plant Mol. Biol. , vol.27 , pp. 835-845
- Becker, J.¹ Heun, M.²

5
- 0030984872
- Isolation and characterisation of microsatellites from hexaploid bread wheat
- (1997) Theor. Appl. Genet. , vol.94 , pp. 557-563
- Bryan, G.J.¹ Collins, A.J.² Stephenson, P.³ Orry, A.⁴ Smith, J.B.⁵ Gale, M.D.⁶

6
- 0031024531
- Relative mutation rates at di-, tri- and tetranucleotide microsatellite loci
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1041-1046
- Chakraborty, R.¹ Kimmel, M.² Strivers, D.N.³ Davison, L.J.⁴ Deka, R.⁵

7
- 0030266285
- Maize simple repetitive DNA sequences: Abundance and allele variation
- (1996) Genome , vol.39 , pp. 866-873
- Chin, E.C.L.¹ Senior, M.L.² Shu, H.³ Smith, J.S.C.⁴

8
- 0034090835
- Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa)
- (2000) Theor. Appl. Genet. , vol.100 , pp. 713-722
- Cho, Y.G.¹ Ishii, T.² Temnykh, S.³ Chen, X.⁴ Lipovich, L.⁵ McCouch, S.R.⁶ Park, W.D.⁷ Ayer, N.⁸ Cartinhour, S.⁹

9
- 0003253468
- Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSRs
- (2000) Theor. Appl. Genet.
- Eujayl, I.¹ Sorrells, M.E.² Baum, M.³ Wolters, P.⁴ Powell, W.⁵

10
- 2142711892
- University of Washington
- (1999) SWAT/Crossmatch/PHRAP package
- Green, P.¹

11
- 0038060807
- Microsatellites in plants: A new class of molecular markers
- (1996) Curr. Sci. , vol.70 , pp. 45-54
- Gupta, P.K.¹ Balyan, H.S.² Sharma, P.C.³ Ramesh, B.⁴

12
- 0032437150
- Putative assignment of ESTs to the genetic map by use of the SSLP database
- (1998) Mammal. Genome , vol.9 , pp. 1072-1074
- Herron, B.J.¹ Silva, G.H.² Flaherty, L.³

13
- 0029189855
- Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification
- (1995) Mol. Breed. , vol.1 , pp. 365-373
- Kantety, R.V.¹ Zeng, X.² Bennetzen, J.L.³ Zehr, B.E.⁴

14
- 0344417139
- Integration of dinucleotide microsatellites from hexaploid bread wheat into a genetic linkage map of durum wheat
- (1999) Theor Appl. Genet. , vol.98 , pp. 1202-1207
- Korzun, V.¹ Röder, M.S.² Wendekake, K.³ Pasqualone, A.⁴ Lotti, C.⁵ Ganal, M.W.⁶ Blanco, A.⁷

15
- 2142754731
- M.S. Thesis, Cornell University, New York
- (2000) EST clustering for database simplification and candidate gene discovery in rice
- La Rota, C.M.¹

16
- 0033864368
- Assignment of 60 human ESTs in cattle
- (2000) Mammal. Genome , vol.11 , pp. 748-754
- Laurent, P.¹ Elduque, C.² Hayes, H.³ Saunier, K.⁴ Eggen, A.⁵ Levéziel, H.⁶

17
- 0004038637
- Oxford University Press, New York
- (1994) Genes V
- Lewin, B.¹

18
- 0030450464
- Development of simple sequence repeat DNA markers and their integration into a barley linkage map
- (1996) Theor. Appl. Genet. , vol.93 , pp. 869-876
- Liu, Z.W.¹ Biyashev, R.M.² Maroof, M.A.S.³

19
- 0031239614
- Microsatellite marker development, mapping and applications in rice genetics and breeding
- (1997) Plant Mol. Biol. , vol.35 , pp. 89-99
- McCouch, S.R.¹ Chen, X.² Panaud, O.³ Temnykh, S.⁴ Xu, Y.⁵ Cho, Y.G.⁶ Huang, N.⁷ Ishii, T.⁸ Blair, M.⁹

20
- 0032727821
- A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledge base
- (1999) Genome Res. , vol.9 , pp. 1143-1155
- Miller, R.T.¹ Christoffels, A.G.²

21
- 0035090411
- Molecular linkage map for an intraspecific recombinant inbred population of durum wheat (Triticum turgidum L. var. durum)
- (2001) Theor. Appl. Genet. , vol.102 , pp. 177-186
- Nachit, M.¹ Elouafi, I.² Pagnotta, M.A.³ El Saleh, A.⁴ Iacono, E.⁵ Labhilili, M.⁶ Asbati, A.⁷ Azrak, M.⁸ Hazzam, H.⁹ Benscher, D.¹⁰ Khairallah, M.¹¹ Ribaut, J.¹² Tanzarella, O.A.¹³ Porceddu, E.¹⁴ Sorrells, M.E.¹⁵

22
- 8944262197
- Survey of CAG/CTG repeats in human cDNAs representing new genes: Candidates for inherited neurological disorders
- (1996) Human Mol. Genet. , vol.5 , pp. 1001-1009
- Neri, C.¹ Albanese, V.² Lebre, A.-S.³ Holbert, S.⁴ Saada, C.⁵ Bougueleret, L.⁶ Meier-Ewert, S.⁷ Le Gall, I.⁸ Millasseau, P.⁹ Bui, H.¹⁰ Giudicelli, C.¹¹ Massart, C.¹² Guillou, S.¹³ Gervy, P.¹⁴ Poullier, E.¹⁵ Rigault, P.¹⁶ Weissenbach, J.¹⁷ Lennon, G.¹⁸ Chumakov, I.¹⁹ Dausset, J.²⁰ more..

23
- 0001682462
- Detection of genetic diversity in closely related bread wheat using microsatellite markers
- (1995) Theor. Appl. Genet. , vol.92 , pp. 1078-1084
- Plaschke, J.¹ Ganal, M.W.² Röder, M.S.³

24
- 0031469302
- Polymorphisms at 13 expressed human sequences containing CAG/CTG repeats and analysis in autosomal dominant cerebellar ataxia (ADCA) patients
- (1997) Human Genet. , vol.101 , pp. 18-21
- Pujana, M.A.¹ Gratacos, M.² Corral, J.³ Banchs, I.⁴ Sanchez, A.⁵ Genis, D.⁶ Cervera, C.⁷ Volpini, V.⁸ Estivill, X.⁹

25
- 0030292488
- Moderate expansion of a normally biallelic trinucleotide repeat in spinocerebellar ataxia type 2
- (1996) Nature Genet. , vol.13 , pp. 269-276
- Pulst, S.-M.¹ Nechiporuk, A.² Nechiporuk, T.³ Gispert, S.⁴ Chen, X.-N.⁵ Lopes-Cendes, I.⁶ Pearlman, S.⁷ Starkman, S.⁸ Orozco-Diaz, G.⁹ Lunkes, A.¹⁰ DeJong, P.¹¹ Rouleau, G.A.¹² Aurburger, G.¹³ Korenberg, J.R.¹⁴ Figueroa, C.¹⁵ Sahba, S.¹⁶

26
- 0033965855
- The TIGR Gene Indices: Reconstruction and representation of expressed gene sequences
- (2000) Nucl. Acids Res. , vol.28 , pp. 141-145
- Quackenbush, J.¹ Liang, F.²

27
- 0034533714
- Genetics , vol.156 , pp. 1997-2005
- Ramsay, L.¹ Macaulay, M.² Degli Ivannissevich, S.³ MacLean, K.⁴ Cardle, L.⁵ Fuller, J.⁶ Edwards, K.J.⁷ Tuvesson, S.⁸ Morgante, M.⁹ Massari, A.¹⁰ Maestri, E.¹¹ Marmiroli, N.¹² Sjakste, T.¹³ Ganal, M.¹⁴ Powell, W.¹⁵ Waugh, R.¹⁶

28
- 0034322184
- COMPASS of 47787 cattle ESTs
- (2000) Animal Biotechnol. , vol.11 , pp. 175-241
- Rebeiz, M.¹ Lewin, H.A.²

29
- 0031904006
- A microsatellite map of wheat
- (1998) Genetics , vol.149 , pp. 2007-2023
- Röder, M.S.¹ Korzun, V.² Wandehake, K.³ Planschke, J.⁴ Tixier, M.H.⁵ Leroy, P.⁶ Ganal, M.W.⁷

30
- 0031200996
- Discriminating between barley genotypes using microsatellite markers
- (1997) Genome , vol.40 , pp. 442-450
- Russell, J.¹ Fuller, J.² Young, G.³ Tomas, B.⁴ Taramino, G.⁵ Macaulay, M.⁶ Waugh, R.⁷ Powell, W.⁸

31
- 0029346939
- Assessment of genomic origins and genetic diversity in the genus Eleusine with DNA markers
- (1995) Genome , vol.38 , pp. 757-763
- Salimath, S.S.¹ De Oliveira, A.C.² Godwin, I.D.³ Bennetzen, J.L.⁴

32
- 0030292368
- Identification of the spinocerebellar ataxia type 2 gene using a direct identification of repeat expansion and cloning technique
- (1996) DIRECT. Nature Genet. , vol.13 , pp. 277-284
- Sanpei, K.¹ Takano, H.² Igarashi, S.³ Sato, T.⁴ Oyake, M.⁵ Sasaki, H.⁶ Wakisaka, A.⁷ Tashiro, T.⁸ Ishida, Y.⁹ Ikeuchi, T.¹⁰ Koide, R.¹¹ Saito, M.¹² Sato, A.¹³ Tanaka, T.¹⁴ Hanyu, S.¹⁵ Takiyama, Y.¹⁶ Nishizawa, M.¹⁷ Shimizu, N.¹⁸ Nomura, Y.¹⁹ Sagawa, N.²⁰ more..

33
- 13344277348
- Psychosis and genes with trinucleotide repeat polymorphism
- (1996) Human Genet. , vol.97 , pp. 244-246
- Sasaki, T.¹ Billet, E.² Petronis, A.³ Ying, D.⁴ Parsons, T.⁵ Macci Ardi, F.M.⁶ Meltzer, H.Y.⁷ Lieberman, J.⁸ Joffe, R.T.⁹ Ross, C.A.¹⁰ McInnis, M.G.¹¹ Li, S.H.¹² Kennedy, J.L.¹³

34
- 0031797308
- The mutation rates of di-, tri-, and tetranucleotide repeats in Drosophila melanogaster
- (1988) Mol. Biol. Evol. , vol.5 , pp. 1751-1760
- Schug, M.D.¹ Hutter, C.M.² Wetterstrand, K.A.³ Gaudette, M.S.⁴ Mackay, T.P.C.⁵ Aquadro, C.F.⁶

35
- 10244230901
- A gene map of the human genome
- (1996) Science , vol.274 , Issue.5287 , pp. 540-546
- Schuler, G.D.¹ Boguski, M.S.²

36
- 0034051568
- Analysis of SSRs derived from grape ESTs
- (2000) Theor. Appl. Genet. , vol.100 , pp. 723-726
- Scott, K.D.¹ Eggler, P.² Seaton, G.³ Rossetto, M.⁴ Ablett, E.M.⁵ Lee, L.S.⁶ Henry, R.J.⁷

37
- 0030497998
- Simple sequence repeat markers developed from maize found in the GenBank database: Map construction
- (1996) Crop Sci. , vol.36 , pp. 1676-1683
- Senior, M.L.¹ Chin, E.C.L.² Lee, M.³ Smith, J.S.C.⁴

38
- 0004239562
- University of Washington, Seattle, WA
- (1999) RepeatMasker
- Smit, A.¹

39
- 2142653822
- The evolution of comparative plant genetics
- J.P. Gustafson (Ed.) Genomes. (6-8 June 1998, Columbia, MO), Kluwer Academic Publishers, Boston, MA
- (2000) Proceedings 22nd Stadler Symposium
- Sorrells, M.E.¹

40
- 2142757545
- Comparative genomics for tef improvement
- H. Tefera (Ed.) 13-16 October 2000, Addis Ababa, Ethiopia
- (2000) Proceedings of the International Workshop for tef Improvement
- Sorrells, M.E.¹

41
- 0021770546
- Simple sequence repeats are ubiquitous repetitive components of eukaryotic genomes
- (1984) Nucl. Acids Res. , vol.12 , pp. 4127-4138
- Tautz, D.¹ Renz, M.²

42
- 0008842588
- Mapping and genome organization of microsatellites in rice (Oryza sativa Theor
- (1999) Appl. Genet. , vol.100 , pp. 698-712
- Temnykh, S.¹ Park, W.D.² Ayers, N.³ Cartinhour, S.⁴ Hauck, N.⁵ Lipovich, L.⁶ Cho, Y.G.⁷ Ishii, T.⁸ McCouch, S.R.⁹

43
- 0027480960
- A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes
- (1993) Cell , vol.72 , pp. 971-983

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.