-
1
-
-
1842717952
-
Comparative analysis of amino acid repeats in rodents and humans
-
Alba, M.M., and Guigo, R. 2004. Comparative analysis of amino acid repeats in rodents and humans. Genome Res. 14: 549-554.
-
(2004)
Genome Res.
, vol.14
, pp. 549-554
-
-
Alba, M.M.1
Guigo, R.2
-
2
-
-
0033280242
-
Amino acid reiterations in yeast are overrepresented in particular classes of proteins and show evidence of a slippage-like mutational process
-
Alba, M.M., Santibanez-Koref, M.F., and Hancock, J.M. 1999. Amino acid reiterations in yeast are overrepresented in particular classes of proteins and show evidence of a slippage-like mutational process. J. Mol. Evol. 49: 789-797.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 789-797
-
-
Alba, M.M.1
Santibanez-Koref, M.F.2
Hancock, J.M.3
-
3
-
-
0035020731
-
The comparative genomics of polyglutamine repeats: Extreme differences in the codon organization of repeat-encoding regions between mammals and Drosophila
-
Alba, M.M., Santibanez-Koref, M.F., and Hancock, J.M. 2001. The comparative genomics of polyglutamine repeats: extreme differences in the codon organization of repeat-encoding regions between mammals and Drosophila. J. Mol. Evol. 52: 249-259.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 249-259
-
-
Alba, M.M.1
Santibanez-Koref, M.F.2
Hancock, J.M.3
-
4
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., and Blake, J.A. 2000. Gene ontology: tool for the unification of biology. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
5
-
-
3142665525
-
GOstat: Find statistically overrepresented gene ontologies within a group of genes
-
Beissbarth, T., and Speed, T.P. 2004. GOstat: Find statistically overrepresented gene ontologies within a group of genes. Bioinformatics, 20: 1464-1465.
-
(2004)
Bioinformatics
, vol.20
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
6
-
-
0347418199
-
Alanine tracts: The expanding story of human illness and trinucleotide repeats
-
Brown, L.Y., and Brown, S.A. 2004. Alanine tracts: the expanding story of human illness and trinucleotide repeats. Trends Genet. 20: 51-58.
-
(2004)
Trends Genet.
, vol.20
, pp. 51-58
-
-
Brown, L.Y.1
Brown, S.A.2
-
7
-
-
0034640011
-
Trinucleotide repeats: Mechanisms and pathophysiology
-
Cummings, C.J., and Zoghbi, H.Y. 2000. Trinucleotide repeats: mechanisms and pathophysiology. Hum. Mol. Genet. 9: 909-916.
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 909-916
-
-
Cummings, C.J.1
Zoghbi, H.Y.2
-
8
-
-
17844383699
-
Functional insights from the distribution and role of homopeptide repeat-containing proteins
-
Faux, N.G., Bottomley, S.P., Lesk, A.M., Irving, J.A., Morrison, J.R., de la Banda, M.G., and Whisstock, J.C. 2005. Functional insights from the distribution and role of homopeptide repeat-containing proteins. Genome Res. 15: 537-551.
-
(2005)
Genome Res.
, vol.15
, pp. 537-551
-
-
Faux, N.G.1
Bottomley, S.P.2
Lesk, A.M.3
Irving, J.A.4
Morrison, J.R.5
De La Banda, M.G.6
Whisstock, J.C.7
-
9
-
-
0037150524
-
Neurodegeneration. A glutamine-rich trail leads to transcription factors
-
Washington, D.C.
-
Freiman, R.N., and Tjian, R. 2002. Neurodegeneration. A glutamine-rich trail leads to transcription factors. Science (Washington, D.C.), 296: 2149-2150.
-
(2002)
Science
, vol.296
, pp. 2149-2150
-
-
Freiman, R.N.1
Tjian, R.2
-
10
-
-
0142184516
-
A novel feature of microsatellites in plants: A distribution gradient along the direction of transcription
-
Fujimori, S., Washio, T., Higo, K., Ohtomo, Y., Murakami, K., Matsubara, K., et al. 2003. A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription. FEBS Lett. 554: 17-22.
-
(2003)
FEBS Lett.
, vol.554
, pp. 17-22
-
-
Fujimori, S.1
Washio, T.2
Higo, K.3
Ohtomo, Y.4
Murakami, K.5
Matsubara, K.6
-
11
-
-
23444458415
-
Transcriptional activation modulated by homopolymeric glutamine and proline stretches
-
Washington, D.C.
-
Gerber, H.P., Seipel, K., Georgiev, O., Hofferer, M., Hug, M., Rusconi, S., and Schaffner, W. 1994. Transcriptional activation modulated by homopolymeric glutamine and proline stretches. Science (Washington, D.C.), 263: 808-811.
-
(1994)
Science
, vol.263
, pp. 808-811
-
-
Gerber, H.P.1
Seipel, K.2
Georgiev, O.3
Hofferer, M.4
Hug, M.5
Rusconi, S.6
Schaffner, W.7
-
12
-
-
0033027083
-
Simple sequence is abundant in eukaryotic proteins
-
Golding, G.B. 1999. Simple sequence is abundant in eukaryotic proteins. Protein Sci. 8: 1358-1361.
-
(1999)
Protein Sci.
, vol.8
, pp. 1358-1361
-
-
Golding, G.B.1
-
13
-
-
0028325481
-
Codon reiteration and the evolution of proteins
-
Green, H., and Wang, N. 1994. Codon reiteration and the evolution of proteins. Proc. Natl. Acad. Sci. U.S.A. 91: 4298-4302.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 4298-4302
-
-
Green, H.1
Wang, N.2
-
14
-
-
0033845697
-
Evolution of simple sequence in proteins
-
Huntley, M.A., and Golding, G.B. 2000. Evolution of simple sequence in proteins. J. Mol. Evol. 51: 131-140.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 131-140
-
-
Huntley, M.A.1
Golding, G.B.2
-
15
-
-
0029117163
-
Statistical significance of sequence patterns in proteins
-
Karlin, S. 1995. Statistical significance of sequence patterns in proteins. Curr. Opin. Struct. Biol. 5: 360-371.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 360-371
-
-
Karlin, S.1
-
16
-
-
0029983147
-
Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development
-
Karlin, S., and Burge, C. 1996. Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development. Proc. Natl. Acad. Sci. U.S.A. 93: 1560-1565.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1560-1565
-
-
Karlin, S.1
Burge, C.2
-
17
-
-
0037039436
-
Amino acid runs in eukaryotic proteomes and disease associations
-
Karlin, S., Brocchieri, L., Bergman, A., Mrazek, J., and Gentles, A.J. 2002. Amino acid runs in eukaryotic proteomes and disease associations. Proc. Natl. Acad. Sci. U.S.A. 99: 333-338.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 333-338
-
-
Karlin, S.1
Brocchieri, L.2
Bergman, A.3
Mrazek, J.4
Gentles, A.J.5
-
18
-
-
0033919542
-
Amino acid repeat patterns in protein sequences: Their diversity and structural-functional implications
-
Katti, M.V., Sami-Subbu, R., Ranjekar, P.K., and Gupta, V.S. 2000. Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications. Protein Sci. 9: 1203-1209.
-
(2000)
Protein Sci.
, vol.9
, pp. 1203-1209
-
-
Katti, M.V.1
Sami-Subbu, R.2
Ranjekar, P.K.3
Gupta, V.S.4
-
19
-
-
0033950079
-
The importance of being proline: The interaction of proline-rich motifs in signaling proteins with their cognate domains
-
Kay, B.K., Williamson, M.P., and Sudol, M. 2000. The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. FASEB J. 14: 231-241.
-
(2000)
FASEB J.
, vol.14
, pp. 231-241
-
-
Kay, B.K.1
Williamson, M.P.2
Sudol, M.3
-
20
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson, G., and Gutman, G.A. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4: 203-221.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
21
-
-
0033569354
-
A census of protein repeats
-
Marcotte, E.M., Pellegrini, M., Yeates, T.O., and Eisenberg, D. 1999. A census of protein repeats. J. Mol. Biol. 293: 151-160.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 151-160
-
-
Marcotte, E.M.1
Pellegrini, M.2
Yeates, T.O.3
Eisenberg, D.4
-
22
-
-
0030953366
-
Nucleotide compositional constraints on genomes generate alanine-, glycine-, and proline-rich structures in transcription factors
-
Nakachi, Y., Hayakawa, T., Oota, H., Sumiyama, K., Wang, L., and Ueda, S. 1997. Nucleotide compositional constraints on genomes generate alanine-, glycine-, and proline-rich structures in transcription factors. Mol. Biol. Evol. 14: 1042-1049.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1042-1049
-
-
Nakachi, Y.1
Hayakawa, T.2
Oota, H.3
Sumiyama, K.4
Wang, L.5
Ueda, S.6
-
23
-
-
0033544693
-
Tendency for local repetitiveness in amino acid usages in modern proteins
-
Nishizawa, K., Nishizawa, M., and Kim, K.S. 1999. Tendency for local repetitiveness in amino acid usages in modern proteins. J. Mol. Biol. 294: 937-953.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 937-953
-
-
Nishizawa, K.1
Nishizawa, M.2
Kim, K.S.3
-
24
-
-
0036087522
-
UTRdb: A specialized database of 5′ and 3′ untranslated regions of eukaryotic mRNAs
-
Pesole, G., Liuni, S., Grillo, G., Ippedico, M., Larizza, A., Makalowski, W., and Saccone, C. 2002. UTRdb: a specialized database of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 30: 335-340.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 335-340
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
Ippedico, M.4
Larizza, A.5
Makalowski, W.6
Saccone, C.7
-
25
-
-
0037624063
-
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
-
Rice Full-Length cDNA Consortium. Washington, D.C.
-
Rice Full-Length cDNA Consortium. 2003. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science (Washington, D.C.), 301: 376-379.
-
(2003)
Science
, vol.301
, pp. 376-379
-
-
-
26
-
-
0141498465
-
Abundance and distributions of eukaryote protein simple sequences
-
Sim, K.L., and Creamer, T.P. 2002. Abundance and distributions of eukaryote protein simple sequences. Mol. Cell Proteomics, 1: 983-995.
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 983-995
-
-
Sim, K.L.1
Creamer, T.P.2
-
27
-
-
1542286213
-
Protein simple sequence conservation
-
Sim, K.L., and Creamer, T.P. 2004. Protein simple sequence conservation. Proteins, 54: 629-638.
-
(2004)
Proteins
, vol.54
, pp. 629-638
-
-
Sim, K.L.1
Creamer, T.P.2
-
28
-
-
0029818399
-
Class III POU genes: Generation of homopolymeric amino acid repeats under GC pressure in mammals
-
Sumiyama, K., Washio-Watanabe, K., Saitou, N., Hayakawa, T., and Ueda, S. 1996. Class III POU genes: generation of homopolymeric amino acid repeats under GC pressure in mammals. J. Mol. Evol. 43: 170-178.
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 170-178
-
-
Sumiyama, K.1
Washio-Watanabe, K.2
Saitou, N.3
Hayakawa, T.4
Ueda, S.5
-
29
-
-
0033556090
-
DNA distortion and multimerization: Novel functions of the glutamine-rich domain of GAGA factor
-
Wilkins, R.C., and Lis, J.Y. 1999. DNA distortion and multimerization: novel functions of the glutamine-rich domain of GAGA factor. J. Mol. Biol. 285: 515-525.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 515-525
-
-
Wilkins, R.C.1
Lis, J.Y.2
-
30
-
-
0036078076
-
Compositional gradients in Gramineae genes
-
Wong, G.K., Wang, J., Tao, L., Tan, J., Zhang, J., Passey, D.A., and Yu, J. 2002. Compositional gradients in Gramineae genes. Genome Res. 12: 851-856.
-
(2002)
Genome Res.
, vol.12
, pp. 851-856
-
-
Wong, G.K.1
Wang, J.2
Tao, L.3
Tan, J.4
Zhang, J.5
Passey, D.A.6
Yu, J.7
-
31
-
-
0034049112
-
Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae
-
Young, E.T., Sloan, J.S., and Van Riper, K.K. 2000. Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae. Genetics, 154: 1053-1068.
-
(2000)
Genetics
, vol.154
, pp. 1053-1068
-
-
Young, E.T.1
Sloan, J.S.2
Van Riper, K.K.3
-
32
-
-
2442687890
-
Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana
-
Zhang, L.D., Yuan, D.J., Yu, S.W., Li, Z.G., Cao, Y.F., Miao, Z.Q., et al. 2004. Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana. Bioinformatics, 20: 1081-1086.
-
(2004)
Bioinformatics
, vol.20
, pp. 1081-1086
-
-
Zhang, L.D.1
Yuan, D.J.2
Yu, S.W.3
Li, Z.G.4
Cao, Y.F.5
Miao, Z.Q.6
|