Fluorescence in situ hybridization applied to domestic animal cytogenetics

Cytogenetic and Genome Research

Volumn 126, Issue 1-2, 2009, Pages 34-48

  Rubes, J ^a   Pinton, A ^b   Bonnet Garnier, A ^b   Fillon, V ^b   Musilova, P ^a   Michalova, K ^c   Kubickova, S ^a   Ducos, A ^b   Yerle, M ^b  

^a VETERINARY RESEARCH INSTITUTE   (Czech Republic)

^b UNIVERSITÉ DE TOULOUSE   (France)

^c CHARLES UNIVERSITY   (Czech Republic)

Author keywords

Cattle; Cytogenetics; FISH; Horse; Pig; Poultry

Indexed keywords

GENOMIC DNA;

CATTLE; CHICKEN; CHROMOSOME ABERRATION; CHROMOSOME IDENTIFICATION; CYTOGENETICS; DOMESTIC ANIMAL; EVOLUTIONARY HOMOLOGY; FARM ANIMAL; FLUORESCENCE IN SITU HYBRIDIZATION; FOWL; HORSE; HUMAN; MICROCHROMOSOME; MOLECULAR CLONING; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; POULTRY; PRIORITY JOURNAL; REVIEW; SWINE;

ANIMALS; ANIMALS, DOMESTIC; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA PROBES; FEMALE; IN SITU HYBRIDIZATION, FLUORESCENCE; MALE;

ANIMALIA; AVES; BOS; EQUIDAE; SUIDAE;

EID: 73349140240     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000245905     Document Type: Review

References (164)

1. Al-Bayati HK, Duscher S, Kollers S, Rettenberger G, Fries R, Brenig B: Construction and characterization of a porcine P1-derived artificial chromosome (PAC) library covering 3.2 genome equivalents and cytogenetical assignment of six type I and type II loci. Mamm Genome 10: 569-572 (1999).
2. Anglana M, Bertoni L, Giulotto E: Cloning of a polymorphic sequence from the nontranscribed spacer of horse rDNA. Mamm Genome 7: 539-541 (1996).
3. Apiou F, Vincent-Naulleau S, Spatz A, Vielh P, Geffrotin, et al: Comparative genomic hybridization analysis of hereditary swine cutaneous melanoma revealed loss of the swine 13q36-q49 chromosomal region in the nodular melanoma subtype. Int J Cancer 110: 232-238 (2004).
4. Barendse W, Vaiman D, Kemp SJ, Sugimoto Y, Armitage SM, et al: A medium-density genetic linkage map of the bovine genome. Mamm Genome 8: 21-28 (1997).
5. Bjerregaard B, Pedersen HG, Jakobsen AS, Rickords LF, Lai L, et al: Activation of ribosomal RNA genes in porcine embryos produced in vitro or by somatic cell nuclear transfer. Mol Reprod Dev 74: 35-41 (2007).
6. Bonnet-Garnier A, Pinton A, Berland HM, Khireddine B, Eggen A, et al: Sperm nuclei analysis of 1/29 Robertsonian translocation carrier bulls using fluorescence in situ hybridization. Cytogenet Genome Res 112: 241-247 (2006).
7. Bonnet-Garnier A, Guardia S, Bonnet N, Calgaro A, Billoux S, et al: Interchromosomal effect and reciprocal translocation in pigs. Chromosome Res 16: 1039 (2008a)
8. Bonnet-Garnier A, Lacaze S, Beckers JF, Berland HM, Pinton A, et al: Meiotic segregation analysis in cows carrying the t(1; 29) Robertsonian translocation. Cytogenet Genome Res 120: 91-96 (2008b).
9. Breen M, Langford CF, Carter NP, Fischer PE, Marti E, et al: Detection of equine X chromosome abnormalities in equids using a horse X whole chromosome paint probe (WCPP). Vet J 153: 235-238 (1997).
10. Brito LFC, Sertich PL, Durkin K, Chowdhary BP, Turner RM, et al: Autosomic 27 trisomy in a standardbred colt. J Equine Vet Sci 28: 431-436 (2008).
11. Bugno M, Slota E: Application of arm-specific painting probes of horse X chromosome for karyotype analysis in an infertile Hutsul mare with 64,XX/65,XX + Xp karyotype: Case report. Acta Vet Hung 55: 309-314 (2007).
12. Bugno M, Slota E, Pienkowska-Schelling A, Schelling C: Detection of equine X chromosome mosaicism in a mare using an equine X whole chromosome painting probe (WCPP) - A case report. Acta Vet Hung 55: 207-212 (2007a).
13. Bugno M, Slota E, Koscielny M: Karyotype evaluation among young horse populations in Poland. Schweiz Arch Tierheilkd 149: 231-236 (2007b).
14. Bugno M, Zyga A, Słota E: Microdissected bovine X chromosome segment delineates homologous chromosomal regions in sheep and goat. Folia Biol 56: 149-151 (2008).
15. Buitkamp J, Ewald D, Schalkwyk L, Weiher M, Masabanda J, et al: Construction and characterisation of a gridded chicken cosmid library with four-fold genomic coverage. Anim Genet 29: 295-301 (1998).
16. Buitkamp J, Kollers S, Durstewitz G, Welzel K, Schafer K, et al: Construction and characterization of a gridded cattle BAC library. Anim Genet 31: 347-351 (2000).
17. Burkin DJ, O'Brien PC, Broad TE, Hill DF, Jones CA, et al: Isolation of chromosome-specific paints from high-resolution flow karyotypes of the sheep ( Ovis aries ). Chromosome Res 5: 102-108 (1997).
18. Cai L, Taylor JF, Wing RA, Gallagher DS, Woo SS, Davis SK: Construction and characterization of a bovine bacterial artificial chromosome library. Genomics 29: 413-425 (1995).
19. Carbone L, Nergadze SG, Magnani E, Misceo D, Cardone MF et al: Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87: 777-782 (2006).
20. Chaudhary R, Kijas J, Raudsepp T, Guan XY, Zhang H, Chowdhary BP: Microdissection of pig chromosomes: dissection of whole chromosomes, arms and bands for construction of paints and libraries. Hereditas 128: 265-271 (1998).
21. Chaves R, Adega F, Heslop-Harrison JS, Guedes-Pinto H, Wienberg J: Complex satellite DNA reshuffling in the polymorphic t(1; 29) Robertsonian translocation and evolutionarily derived chromosomes in cattle. Chromosome Res 11: 641-648 (2003).
22. Chowdhary BP, Raudsepp T: Chromosome painting in farm, pet and wild animal species. Methods Cell Sci 23: 37-55 (2001).
23. Chowdhary BP, Harbitz I, Makinen A, Davies W, Gustavsson I: Localization of the glucose phosphate isomerase gene to the p12-q21 segment of chromosome 6 in pig by in situ hybridization. Hereditas 111: 73-78 (1989).
24. Chowdhary BP, Thomsen PD, Harbitz I, Landset M, Gustavsson I: Precise localization of the genes for glucose phosphate isomerase ( GPI ), calcium release channel ( CRC ), hormonesensitive lipase ( LIPE ), and growth hormone ( GH ) in pigs, using nonradioactive in situ hybridization. Cytogenet Cell Genet 67: 211-214 (1994).
25. Coppola G, Alexander B, Di Berardino D, John ES, Basrur PK, King WA: Use of cross-species in-situ hybridization (ZOO-FISH) to assess chromosome abnormalities in day-6 invivo - or in-vitro - produced sheep embryos. Chromosome Res 15: 399-408 (2007).
26. Coullin P, Roy L, Pellestor F, Candelier JJ, Bed-Hom B, et al: PRINS, the other in situ DNA labeling method useful in cellular biology. Am J Med Genet 107: 127-135 (2002).
27. Coullin P, Bed'Hom B, Candelier JJ, Vettese D, Maucolin S, et al: Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds. Chromosome Res 13: 665-673 (2005).
28. Crooijmans RP, Vrebalov J, Dijkhof RJ, van der Poel JJ, Groenen MA: Two-dimensional screening of the Wageningen chicken BAC library. Mamm Genome 11: 360-363 (2000).
29. De Lorenzi L, De Giovanni A, Molteni L, Denis C, Eggen A, Parma P: Characterization of a balanced reciprocal translocation, rcp(9; 11)(q27;q11) in cattle. Cytogenet Genome Res 119: 231-234 (2007).
30. De Lorenzi L, Molteni L, De Giovanni A, Parma P: A new case of rob(14; 17) in cattle. Cytogenet Genome Res 120: 144-146 (2008a).
31. De Lorenzi L, Molteni L, Denis C, Eggen A, Parma P: A new case of centric fusion in cattle: rob(21; 23). Anim Genet 39: 454-455 (2008b).
32. Derjusheva SE, Loginova JA, Parada R, Chiryaeva OG, Smirnov AF, Jaszczak K: The comparative analysis of NOR polymorphism detected by FISH and Ag-staining on horse chromosomes. Caryologia 51: 1-11 (1998).
33. Di Meo GP, Molteni L, Perucatti A, De Giovanni A, Incarnato D, et al: Chromosomal characterization of three centric fusion translocations in cattle using G-, R- and C-banding and FISH technique. Caryologia 53: 213-218 (2000).
34. Dixon SC, Miller NG, Carter NP, Tucker EM: Bivariate flow cytometry of farm animal chromosomes: a potential tool for gene mapping. Anim Genet 23: 203-210 (1992).
35. Douaud M, Feve K, Gerus M, Fillon V, Bardes S, et al: Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics 9: 129 (2008).
36. Ducos A, Pinton A, Seguela A, Berland HM, Blanc MF, et al: Pericentric inversion of the chromosome N°4 in pig. Genet Sel Evol 29: 383-394 (1997).
37. Ducos A, Pinton A, Yerle M, Seguela A, Berland HM, et al: Cytogenetic and molecular characterization of eight new reciprocal translocations in the pig species. Estimation of their incidence in French populations. Genet Sel Evol 34: 389-406 (2002).
38. Ducos A, Revay T, Kovacs A, Hidas A, Pinton A, et al: Cytogenetic screening of livestock populations in Europe: an overview. Cytogenet Genome Res 120: 26-41 (2008).
39. Eggen A, Gautier M, Billaut A, Petit E, Hayes H, et al: Construction and characterization of a bovine BAC library with four genome-equivalent coverage. Genet Sel Evol 33: 543-548 (2001).
40. Enricsson B, Backstrom L: Translocation heterozygosity in a boar. Hereditas 52: 166-170 (1964).
41. Fillon V, Morisson M, Zoorob R, Auffray C, Douaire M, et al: Identification of 16 chicken microchromosomes by molecular markers using two-colour fluorescence in situ hybridization (FISH). Chromosome Res 6: 307-313 (1998).
42. Fillon V, Vignoles M, Crooijmans RP, Groenen MA, Zoorob R, Vignal A: FISH mapping of 57 BAC clones reveals strong conservation of synteny between Galliformes and Anseriformes. Anim Genet 38: 303-307 (2007).
43. Galkina S, Deryusheva S, Fillon V, Vignal A, Crooijmans R, et al: FISH on avian lampbrush chromosomes produces higher resolution gene mapping. Genetica 128: 241-251 (2006).
44. Gallagher DS Jr, Lewis BC, De Donato M, Davis SK, Taylor JF, Edwards JF: Autosomal trisomy 20 (61,XX,+20) in a malformed bovine fetus. Vet Pathol 36: 448-451 (1999).
45. Godard S, Schibler L, Oustry A, Cribiu EP, Guerin G: Construction of a horse BAC library and cytogenetical assignment of 20 type I and type II markers. Mamm Genome 9: 633-637 (1998).
46. Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, et al: Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36: 252-262 (1996). (Pubitemid 26307487)
47. Griffin DK, Haberman F, Masabanda J, O'Brien P, Bagga M, et al: Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome. Cytogenet Cell Genet 87: 278-281 (1999).
48. Griffin DK, Robertson LB, Tempest HG, Skinner BM: The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res 117: 64-77 (2007).
49. Griffin DK, Robertson LB, Tempest HG, Vignal A, Fillon V, et al: Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. BMC Genomics 9: 168 (2008).
50. Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, et al: A consensus linkage map of the chicken genome. Genome Res 10: 137-147 (2000).
51. Guiller-Gencik Z, Bernheim A, Coullin P: Generation of whole chromosome painting probes specific to each chicken macrochromosome. Cytogenet Cell Genet 87: 282-285 (1999).
52. Gustavsson I, Rockborn G: Chromosome abnormality in three cases of lymphatic leukaemia in cattle. Nature 203: 990 (1964).
53. Guttenbach M, Nanda I, Feichtinger W, Masabanda JS, Griffin DK, Schmid M: Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species. Cytogenet Genome Res 103: 173-184 (2003).
54. Habermann FA, Winter A, Olsaker I, Reichert P, Fries R: Validation of sperm sexing in the cattle ( Bos taurus ) by dual colour fluorescence in situ hybridization. J Anim Breed Genet 122 Suppl 1: 22-27 (2005).
55. Hayes H: Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71: 168-174 (1995).
56. Hillier LW, Miller W, Birney E, Warren W, Hardison RC, et al: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716 (2004).
57. Hills D, Tracey S, Masabanda J, Fries R, Schalkwyk LC, et al: A bovine YAC library containing four- to five-fold genome equivalents. Mamm Genome 10: 837-838 (1999).
58. Hornak M, Hulinska P, Musilova P, Kubickova S, Rubes J: Investigation of chromosome aneuploidies in early porcine embryos using comparative genomic hybridization. Cytogenet Genome Res 126:210-216 (2009).
59. Iannuzzi L, Di Berardino D: Tools of the trade: diagnostics and research in domestic animal cytogenetics. J Appl Genet 49: 357-366 (2008).
60. Iannuzzi L, Molteni L, Di Meo GP, Perucatti A, Lorenzi L, et al: A new balanced autosomal reciprocal translocation in cattle revealed by banding techniques and human-painting probes. Cytogenet Cell Genet 94: 225-228 (2001a).
61. Iannuzzi L, Molteni L, Di Meo GP, De Giovanni A, Perucatti A, et al: A case of azoospermia in a bull carrying a Y-autosome reciprocal translocation. Cytogenet Cell Genet 95: 225-227 (2001b).
62. Iannuzzi L, Di Meo GP, Perucatti A, Eggen A, Incarnato D, et al: A pericentric inversion in the cattle Y chromosome. Cytogenet Cell Genet 94: 202-205 (2001c).
63. Iannuzzi L, Di Meo GP, Leifsson PS, Eggen A, Christensen K: A case of trisomy 28 in cattle revealed by both banding and FISH-mapping techniques. Hereditas 134: 147-151 (2001d).
64. ISCNDB 2000: International System for Chromosome Nomenclature of Domestic Bovids. Di Berardino D, Di Meo GP, Gallagher DS, Hayes H, Iannuzzi L (coordinator) (eds). Cytogenet Cell Genet 92: 283-299(2001).
65. Jantsch M, Hamilton B, Mayr B, Schweizer D: Meiotic chromosome behaviour reflects levels of sequence divergence in Sus scrofa domestica satellite DNA. Chromosoma 99: 330-335 (1990).
66. Janzen MA, Buoen LB, Zhao F, Louis CF: Characterization of a swine chromosome-specific centromeric higher-order repeat. Mamm Genome 10: 579-584 (1999).
67. Jeon JT, Park EW, Jeon HJ, Kim TH, Lee KT, Cheong IC: A large-insert porcine library with sevenfold genome coverage: a tool for positional cloning of candidate genes for major quantitative traits. Mol Cells 16: 113-116 (2003).
68. Kasai F, Garcia C, Arruga MV, Ferguson-Smith MA: Chromosome homology between chicken ( Gallus gallus domesticus ) and the red-legged partridge ( Alectoris rufa ); evidence of the occurrence of a neocentromere during evolution. Cytogenet Genome Res 102: 326-330 (2003).
69. Kawarasaki T, Welch GR, Long CR, Yoshida M, Johnson LA: Verification of flow cytometrically-sorted X- and Y-bearing porcine spermatozoa and reanalysis of spermatozoa for DNA content using the fluorescence in situ hybridization (FISH) technique. Theriogenology 50: 625-635 (1998).
70. Kawarasaki T, Matsumoto K, Chikyu M, Itagaki Y, Horiuchi A: Sexing of porcine embryo by in situ hybridization using chromosome Yand 1-specific DNA probes. Theriogenology 53: 1501-1509 (2000).
71. Kayang BB, Fillon V, Inoue-Murayama M, Miwa M, Leroux S, et al: Integrated maps in quail ( Coturnix japonica ) confirm the high degree of synteny conservation with chicken ( Gallus gallus ) despite 35 million years of divergence. BMC Genomics 7: 101 (2006).
72. King WA: Chromosome variation in the embryos of domestic animals. Cytogenet Genome Res 120: 81-90 (2008).
73. Koch JE, Kolvraa S, Petersen KB, Gregersen N, Bolund L: Oligonucleotide-priming methods for the chromosome-specific labeling of alpha satellite DNA in situ. Chromosoma 98: 259-265 (1989).
74. Konfortova GD, Miller NG, Tucker EM: A new reciprocal translocation (7q+;15q-) in the domestic pig. Cytogenet Cell Genet 71: 285-288 (1995).
75. Korstanje R, O'Brien PC, Yang F, Rens W, Bosma AA, et al: Complete homology maps of the rabbit ( Oryctolagus cuniculus ) and human by reciprocal chromosome painting. Cytogenet Cell Genet 86: 317-322 (1999).
76. Kubickova S, Cernohorska H, Musilova P, Rubes J: The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals. Chromosome Res 10: 571-577 (2002).
77. Ladjali-Mohammedi K, Bitgood JJ, Tixier-Boichard M, Ponce De Leon FA: International system for standardized avian karyotypes (ISSAK): standardized banded karyotypes of the domestic fowl ( Gallus domesticus ). Cytogenet Cell Genet 86: 271-276 (1999).
78. Langford CF, Telenius H, Carter NP, Miller NG, Tucker EM: Chromosome painting using chromosome-specific probes from flowsorted pig chromosomes. Cytogenet Cell Genet 61: 221-223 (1992).
79. Langford CF, Telenius H, Miller NG, Thomsen PD, Tucker EM: Preparation of chromosome-specific paints and complete assignment of chromosomes in the pig flow karyotype. Anim Genet 24: 261-267 (1993).
80. Langford CF, Fischer PE, Binns MM, Holmes NG, Carter NP: Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chromosome Res 4: 115-123 (1996).
81. Lear TL, Bailey E: Equine clinical cytogenetics: the past and future. Cytogenet Genome Res 120: 42-49 (2008).
82. Lear TL, Layton G: Use of Zoo-FISH to characterise a reciprocal translocation in a Thoroughbred mare: t(1; 16)(q16;q21.3). Equine Vet J 34: 207-209 (2002).
83. Lear TL, Lundquist J, Zent WW, Fishback WD, Clark A: Three autosomal chromosome translocations associated with repeated early embryonic loss (REEL) in the domestic horse ( Equus caballus ). Cytogenet Genome Res 120: 117-122 (2008).
84. Lechniak D, Warzych E, Pers-Kamczyc E, Sosnowski J, Antosik P, Rubes J: Gilts and sows produce similar rate of diploid oocytes in vitro whereas the incidence of aneuploidy differs significantly. Theriogenology 68: 755-762 (2007).
85. Lee JH, Park JH, Lee SH, Park CS, Jin DI: Sexing using single blastomere derived from IVF bovine embryos by fluorescence in situ hybridization (FISH). Theriogenology 62: 1452-1458 (2004).
86. Li R, Mignot E, Faraco J, Kadotani H, Cantanese J, et al: Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library. Genomics 58: 9-17 (1999).
87. Liu W, Liu Z, Hu X, Zhang Y, Yuan J, et al: Construction and characterization of a novel 13.34-fold chicken bacterial artificial chromosome library. Anim Biotechnol 14: 145-153 (2003).
88. Malekinejad H, Schoevers EJ, Daemen IJ, Zijlstra C, Colenbrander B, et al: Exposure of oocytes to the Fusarium toxins zearalenone and deoxynivalenol causes aneuploidy and abnormal embryo development in pigs. Biol Reprod 77: 840-847 (2007).
89. Masabanda JS, Burt DW, O'Brien PC, Vignal A, Fillon V, et al: Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics 166: 1367-1373 (2004).
90. Massip K, Berland H, Bonnet N, Calgaro A, Billoux S, et al: Study of inter- and intra-individual variation of meiotic segregation patterns in t(3; 15)(q27;q13) boars. Theriogenology 70: 655-661 (2008).
91. Massip K, Bonnet N, Calgaro A, Billoux S, Bacquie V, et al: Male meiotic segregation analyses of peri- and paracentric inversions in the pig species. Cytogenet Genome Res 125:117-124 (2009).
92. McGraw RA, Jacobson RJ, Akamatsu M: A malespecific repeated DNA sequence in the domestic pig. Nucleic Acids Res 16: 10389 (1988).
93. Meltzer PS, Guan XY, Burgess A, Trent JM: Rapid generation of region specific probes by chromosome microdissection and their application. Nat Genet 1: 24-28 (1992).
94. Milan D, Yerle M, Schmitz A, Chaput B, Vaiman M, et al: A PCR-based method to amplify DNA with random primers: determining the chromosomal content of porcine flowkaryotype peaks by chromosome painting. Cytogenet Cell Genet 62: 139-141 (1993).
95. Molteni L, Perucatti A, Iannuzzi A, Di Meo GP, De Lorenzi L, et al: A new case of reciprocal translocation in a young bull: rcp(11; 21)(q28;q12). Cytogenet Genome Res 116: 80-84 (2007).
96. Morisson M, Pitel F, Fillon V, Pouzadoux A, Berge R, et al: Integration of chicken cytogenetic and genetic maps: 18 new polymorphic markers isolated from BAC and PAC clones. Anim Genet 29: 348-355 (1998).
97. Musilova P, Kubickova S, Zrnova E, Horin P, Vahala J, Rubes J: Karyotypic relationships among Equus grevyi, Equus burchelli and domestic horse defined using horse chromosome arm-specific probes. Chromosome Res 15: 807-813 (2007).
98. Nie W, O'Brien PC, Ng BL, Fu B, Volobouev V, et al: Avian comparative genomics: reciprocal chromosome painting between domestic chicken ( Gallus gallus ) and the stone curlew ( Burhinus oedicnemus , Charadriiformes) - an atypical species with low diploid number. Chromosome Res 17: 99-113 (2009).
99. Nunes M, Yerle M, Dezeure F, Gellin J, Chardon P, Vaiman M: Isolation of four HSP70 genes in the pig and localization on chromosomes 7 and 14. Mamm Genome 4: 247-251 (1993).
100. O'Brien SJ, Clegg MT: Genomes and evolution. Curr Opin Genet Dev 3: 835-836 (1993).
101. Osoegawa K, Woon PY, Zhao B, Frengen E, Tateno M, et al: An improved approach for construction of bacterial artificial chromosome libraries. Genomics 52: 1-8 (1998).
102. Park CY, Uhm SJ, Song SJ, Kim KS, Hong SB, et al: Increase of ICSI efficiency with hyaluronic acid binding sperm for low aneuploidy frequency in pig. Theriogenology 64: 1158-1169 (2005).
103. Parrilla I, Vazquez JM, Oliver-Bonet M, Navarro J, Yelamos J, et al: Fluorescence in situ hybridization in diluted and flow cytometrically sorted boar spermatozoa using specific DNA direct probes labeled by nick translation. Reproduction 126: 317-325 (2003).
104. Pauciullo A, Kubickova S, Cernohorska H, Petrova K, Di Berardino D, et al: Isolation and physical localization of new chromosome-specific centromeric repeats in farm animals. Vet Med Czech 51: 224-231 (2006).
105. Pellestor F, Girardet A, Lefort G, Andreo B, Charlieu JP: PRINS as a method for rapid chromosomal labeling on human spermatozoa. Mol Reprod Dev 40: 333-337 (1995).
106. Pienkowska-Schelling A, Zawada M, Schelling C: A canine X chromosome painting probe applied to four canid species: close relationship of a heterochromatic-like sequence between the dog and the blue fox. J Anim Breed Genet 122: 54-59 (2005).
107. Pinton A, Ducos A, Seguela A, Berland HM, Darre R, et al: Characterization of reciprocal translocations in pigs using dual-colour chromosome painting and primed in situ DNA labeling. Chromosome Res 6: 361-366 (1998).
108. Pinton A, Ducos A, Berland H, Seguela A, Brun-Baronnat C, et al: Chromosomal abnormalities in hypoprolific boars. Hereditas 132: 55-62 (2000).
109. Pinton A, Ducos A, Yerle M: Chromosomal rearrangements in cattle and pigs revealed by chromosome microdissection and chromosome painting. Genet Sel Evol 35: 685-696 (2003).
110. Pinton A, Ducos A, Yerle M: Estimation of the proportion of genetically unbalanced spermatozoa in the semen of boars carrying chromosomal rearrangements using sperm-FISH. Genet Sel Evol 36: 123-137 (2004).
111. Pinton A, Faraut T, Yerle M, Gruand J, Pellestor F, Ducos A: Comparison of male and female meiotic segregation patterns in translocation heterozygotes: a case study in an animal model ( Sus scrofa domestica L.). Hum Reprod 20: 2476-2482 (2005).
112. Pinton A, Calgaro A, Bonnet N, Ferchaud S, Billoux S, et al: Influence of sex on the meiotic segregation of a t(13; 17) Robertsonian translocation: a case study in the pig. Hum Reprod 24:2034-2043 (2009).
113. Primmer CR, Raudsepp T, Chowdhary BP, Moller AP, Ellegren H: Low frequency of microsatellites in the avian genome. Genome Res 7: 471-482 (1997).
114. Rambags BPB, Krijtenburg PJ, Van Drie HF, Lazzari G, Galli C, et al: Numerical chromosomal abnormalities in equine embryos produced in vivo and in vitro. Mol Reprod Dev 72: 77-87 (2005).
115. Raudsepp T, Chowdhary BP: Construction of chromosome-specific paints for meta- and submetacentric autosomes and the sex chromosomes in the horse and their use to detect homologous chromosomal segments in the donkey. Chromosome Res 7: 103-114 (1999).
116. Raudsepp T, Fronicke L, Scherthan H, Gustavsson I, Chowdhary BP: Zoo-FISH delineates conserved chromosomal segments in horse and man. Chromosome Res 4: 218-225 (1996).
117. Rettenberger G, Klett C, Zechner U, Kunz J, Vogel W, Hameister H: Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics 26: 372-378 (1995).
118. Rezacova O, Kubickova S, Cernohorska H, Rubes J: Comparison of spontaneous background genomic aberration frequencies among cattle, pig and humans using dual-colored FISH. Chromosome Res 11: 715-724 (2003).
119. Riquet J, Mulsant P, Yerle M, San Cristobal-Gaudy M, Le Tissier P, et al: Sequence analysis and genetic mapping of porcine chromosome 11 centromeric S0048 marker. Cytogenet Cell Genet 74: 127-132 (1996).
120. Rogel-Gaillard C, Hayes H, Coullin P, Chardon P, Vaiman M: Swine centromeric DNA repeats revealed by primed in situ (PRINS) labeling. Cytogenet Cell Genet 79: 79-84 (1997b).
121. Rogel-Gaillard C, Bourgeaux N, Billault A, Vaiman M, Chardon P: Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet Cell Genet 85: 205-211 (1999).
122. Rogel-Gaillard C, Piumi F, Billault A, Bourgeaux N, Save JC, et al: Construction of a rabbit bacterial artificial chromosome (BAC) library: application to the mapping of the major histocompatibility complex to position 12q.1.1. Mamm Genome 12: 253-255 (2001).
123. Rubes J, Vozdova M, Kubickova S: Aneuploidy in pig sperm: multicolor fluorescence in situ hybridization using probes for chromosomes 1, 10, and Y. Cytogenet Cell Genet 85: 200-204 (1999).
124. Rubes J, Pagacova E, Kopecna O, Kubickova S, Cernohorska H, Vahala J, Di Berardino D: Karyotype, centric fusion polymorphism and chromosomal aberrations in captiveborn mountain reedbuck ( Redunca fulvorufula ). Cytogenet Genome Res 116: 263-268 (2007).
125. Rubes J, Kubickova S, Pagacova E, Cernohorska H, Di Berardino D, et al: Phylogenomic study of spiral-horned antelope by cross-species chromosome painting. Chromosome Res 16: 935-947 (2008).
126. Rybar R, Horakova J, Machatkova M, Hanzalova K, Rubes J: Embryos produced in vitro from bulls carrying 16; 20 and 1; 29 Robertsonian translocations: detection of translocations in embryos by fluorescence in situ hybridization. Zygote 13: 31-34 (2005). (Pubitemid 40814559)
127. Rybar R, Kopecka V, Prinosilova P, Kubickova S, Veznik Z, Rubes J: Fertile bull sperm aneuploidy and chromatin integrity in relationship to fertility. Int J Androl, in press (2009).
128. Santos S, Chaves R, Guedes-Pinto H: Chromosomal localization of the major satellite DNA family (FA-SAT) in the domestic cat. Cytogenet Genome Res 107: 119-122 (2004).
129. Schelling C, Schlapfer J, Billault A, Guziewicz K, Gmur A, et al: Construction of a canine Bacterial Artificial Chromosome library for screening with PCR. J Anim Breed Genet 119: 400-401 (2002).
130. Schermelleh L, Thalhammer S, Heckl W, Posl H, Cremer T, et al: Laser microdissection and laser pressure catapulting for the generation of chromosome-specific paint probes. Biotechniques 27: 362-367 (1999).
131. Scherthan H, Cremer T, Arnason U, Weier HU, Lima-de-Faria A, Fronicke L: Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat Genet 6: 342-347 (1994).
132. Schibler L, Vaiman D, Oustry A, Giraud-Delville C, Cribiu EP: Comparative gene mapping: a fine-scale survey of chromosome rearrangements between ruminants and humans. Genome Res 8: 901-915 (1998a).
133. Schibler L, Vaiman D, Oustry A, Guinec N, Dangy-Caye AL, et al: Construction and extensive characterization of a goat bacterial artificial chromosome library with threefold genome coverage. Mamm Genome 9: 119-124 (1998b).
134. Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn M, et al: First report on chicken genes and chromosomes 2000. Cytogenet Cell Genet 90: 169-218 (2000).
135. Schmid M, Nanda I, Hoehn H, Schartl M, Haaf T, et al: Second report on chicken genes and chromosomes 2005. Cytogenet Genome Res 109: 415-479 (2005).
136. Schmitz A, Chardon P, Gainche I, Chaput B, Guilly MN, et al: Pig standard bivariate flow karyotype and peak assignment for chromosomes X, Y, 3, and 7. Genomics 14: 357-362 (1992).
137. Schmitz A, Oustry A, Chaput B, Bahri-Darwich I, Yerle M, et al: The bovine bivariate flow karyotype and peak identification by chromosome painting with PCR-generated probes. Mamm Genome 6: 415-420 (1995).
138. Schwerin M, Gallagher DS Jr, Miller JR, Thomsen PD: Mapping of repetitive bovine DNA sequences on cattle Y chromosomes. Cytogenet Cell Genet 61: 189-194 (1992).
139. Shibusawa M, Nishida-Umehara C, Masabanda J, Griffin DK, Isobe T, Matsuda Y: Chromosome rearrangements between chicken and guinea fowl defined by comparative chromosome painting and FISH mapping of DNA clones. Cytogenet Genome Res 98: 225-230 (2002).
140. Shibusawa M, Nishibori M, Nishida-Umehara C, Tsudzuki M, Masabanda J, et al: Karyotypic evolution in the Galliformes: an examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny. Cytogenet Genome Res 106: 111-119 (2004).
141. Slota E, Wnuk M, Bugno M, Pienkowska-Schelling A, Schelling C, et al: The mechanisms determining the nucleolar-organizing regions inactivation of domestic horse chromosomes. J Anim Breed Genet 124: 163-171 (2007).
142. Smith J, Bruley CK, Paton IR, Dunn I, Jones CT, et al: Differences in gene density on chicken macrochromosomes and microchromosomes. Anim Genet 31: 96-103 (2000).
143. Sun HF, Ernst CW, Yerle M, Pinton P, Rothschild MF, et al: Human chromosome 3 and pig chromosome 13 show complete synteny conservation but extensive gene-order differences. Cytogenet Cell Genet 85: 273-278 (1999).
144. Suzuki K, Asakawa S, Iida M, Shimanuki S, Fujishima N, et al: Construction and evaluation of a porcine bacterial artificial chromosome library. Anim Genet 31: 8-12 (2000). (Pubitemid 30095931)
145. Switonski M, Andersson M, Nowacka-Woszuk J, Szczerbal I, Sosnowski J, et al: Identification of a new reciprocal translocation in an AI bull by synaptonemal complex analysis, followed by chromosome painting. Cytogenet Genome Res 121: 245-248 (2008).
146. Telenius H, Pelmear AH, Tunnacliffe A, Carter NP, Behmel A, et al: Cytogenetic analysis by chromosome painting using DOPPCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4: 257-263 (1992).
147. Thomas R, Duke SE, Bloom SK, Breen TE, Young AC, et al: A cytogenetically characterized, genome-anchored 10-Mb BAC set and CGH array for the domestic dog. J Hered 98: 635-636 (2007).
148. Vaiman D, Billault A, Tabet-Aoul K, Schibler L, Vilette D, et al: Construction and characterization of a sheep BAC library of three genome equivalents. Mamm Genome 10: 585-587 (1999).
149. Villagomez DAF, Pinton A: Chromosomal abnormalities, meiotic behavior and fertility in domestic animals. Cytogenet Genome Res 120: 69-80 (2008).
150. Viuff D, Rickords L, Offenberg H, Hyttel P, Avery B, et al: A high proportion of bovine blastocysts produced in vitro are mixoploid. Biol Reprod 60: 1273-1278 (1999).
151. Vozdova M, Machatkova M, Kubickova S, Zudova D, Jokesova E, Rubes J: Frequency of aneuploidy in pig oocytes matured in vitro and of the corresponding first polar bodies detected by fluorescent in situ hybridization. Theriogenology 56: 771-776 (2001).
152. Vozdova M, Kubickova S, Cernohorska H, Rubes J: Detection of translocation rob(1; 29) in bull sperm using a specific DNA probe. Cytogenet Genome Res 120: 102-105 (2008).
153. Warren W, Smith TP, Rexroad CE 3 rd , Fahrenkrug SC, Allison T, et al: Construction and characterization of a new bovine bacterial artificial chromosome library with 10 genome-equivalent coverage. Mamm Genome 11: 662-663 (2000).
154. Wienberg J, Jauch A, Stanyon R, Cremer T: Molecular cytotaxonomy of primates by chromosomal in situ suppression hybridization. Genomics 8: 347-350 (1990).
155. Wienberg J, Stanyon R, Nash WG, O'Brien PC, Yang F, et al: Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting. Cytogenet Cell Genet 77: 211-217 (1997).
156. Wnuk M, Bugno M, Slota E: Application of primed in situ DNA synthesis (PRINS) with telomere human commercial kit in molecular cytogenetics of Equus caballus and Sus scrofa scrofa . Folia Histochem Cytobiol 46: 85-88 (2008).
157. Yang F, O'Brien PC, Milne BS, Graphodatsky AS, Solanky N, et al: A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics 62: 189-202 (1999).
158. Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA: Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res 12: 65-76 (2004).
159. Yerle M, Gellin J, Echard G, Lefevre F Gillois M: Chromosomal localization of leukocyte interferon gene in pig ( Sus scrofa domestica L.) by in situ hybridization. Cytogenet Cell Genet 42: 129-132 (1986).
160. Yerle M, Schmitz A, Milan D, Chaput B, Monteagudo L, et al: Accurate characterization of porcine bivariate flow karyotype by PCR and fluorescence in situ hybridization. Genomics 16: 97-103 (1993).
161. Zhu B, Smith JA, Tracey SM, Konfortov BA, Welzel K, et al: A 5 ! genome coverage bovine BAC library: production, characterization, and distribution. Mamm Genome 10: 706-709 (1999).
162. Zimmer R, Verrinder Gibbins AM: Construction and characterization of a large-fragment chicken bacterial artificial chromosome library. Genomics 42: 217-226 (1997a).
163. Zimmer R, King WA, Verrinder Gibbins AM: Generation of chicken Z chromosome painting probes by microdissection for screening large insert genomic libraries. Cytogenet Cell Genet 78: 124-130 (1997b).
164. Zudova D, Rezacova O, Kubickova S, Rubes J: Aneuploidy detection in porcine embryos using fluorescence in situ hybridization. Cytogenet Genome Res 102: 179-183 (2003).