Construction and characterisation of a gridded chicken cosmid library with four-fold genomic coverage

Animal Genetics

Volumn 29, Issue 4, 1998, Pages 295-301

  Buitkamp, J ^a   Ewald, D ^a   Schalkwyk, L ^b   Weiher, M ^b   Masabanda, J ^a   Sazanov, A ^a   Lehrach, H ^b   Fries, R ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Avidin gene cluster; Chicken; Cosmid cloning; Fluorescence in situ hybridisation; Gridded cosmid library

Indexed keywords

CHIMERISM; COSMID; GENOME ANALYSIS; GENOME LIBRARY; IN SITU HYBRIDIZATION; PROBE;

ANIMALS; CHICKENS; CHROMOSOME MAPPING; COSMIDS; DNA; FEMALE; GENE LIBRARY; IN SITU HYBRIDIZATION, FLUORESCENCE; METAPHASE;

AVES; GALLUS GALLUS;

EID: 0032143675     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2052.1998.00331.x     Document Type: Article

References (28)

1. Birnboim H.C. (1983) A rapid alkaline extraction method for the isolation of plasmid DNA. Methods in Enzymology 100, 243-55.
2. Bram R.J. (1996) Isolation of a cDNA encoding the chicken homologue of the human calcium-modulating cyclophilin ligand. Gene 174, 307-9.
3. Broom J.E., Hill D.F., Hughes G. et al. (1995) Sequence of a transposon identified as Tn1000 (gamma delta). DNA Sequence 5, 185-9.
4. Brush D., Dodgson J.B., Choi O.R., Stevens P.W. & Engel J.D. (1985) Replacement variant histone genes contain intervening sequences. Molecular and Cell Biology 5, 1307-17.
5. Burt D.W., Bumstead N., Bitgood J.J., De Ponce Leon F.A. & Crittenden L.B. (1995) Chicken genome mapping: a new era in avian genetics. Trends in Genetics 11, 190-4.
6. Cheng H.H. (1997) Mapping the chicken genome. Poultry Science 76, 1101-7.
7. Clarke L. & Carbon J. (1976) A colony bank containing synthetic Col E1 hybrid plasmids representative of the entire E. coli genome. Cell 9, 91-9.
8. Crooijmans R.P., van Oers P.A., Strijk J.A., van der Poel J.J. & Groenen M.A. (1996) Preliminary linkage map of the chicken (Gallus domesticus) genome based on microsatellite markers: 77 new markers mapped. Poultry Science 75, 746-54.
9. Evans G.A., Lewis K. & Rothenberg B.E. (1989) High efficiency vectors for cosmid microcloning and genomic analysis. Gene 79, 9-20.
10. Flejter W.L., Bennett-Baker P., Barcroft C.L., Kiousis S. & Chamberlain J.S. (1995) Region-specific cosmids and STRPs identified by chromosome micro-dissection and FISH. Genomics 25, 413-20.
11. Gabriel J.-M., Oesch B., Kretzschmar H., Scott M. & Prusiner S.B. (1992) Molecular cloning of a candidate chicken prion protein. Proceedings of the National Academy of Sciences, USA 89, 9097-101.
12. Georges M. & Andersson L. (1996) Livestock genomics comes of age. Genome Research 6, 907-21.
13. Gerke V. & Koch W. (1990) The cDNA sequence of chicken annexin II. Nucleic Acids Research 18, 4246.
14. Gope M.L., Keinänen R.A., Kristo P.A. et al. (1987) Molecular cloning of the chicken avidin cDNA. Nucleic Acids Research 15, 3595-606.
15. Hughes A.L. & Hughes M.K. (1995) Small genomes for better flyers. Nature 377, 391.
16. Jasoni C.L., Walker M.B., Morris M.D. & Reh T.A. (1994) A chicken achaete-scute homolog (CASH-1) is expressed in a temporally and spatially discrete manner in the developing nervous system. Development 120, 769-83.
17. Keinänen R.A., Wallen M.J., Kristo P.A. et al. (1994) Molecular cloning and nucleotide sequence of chicken avidin-related genes 1-5. European Journal of Biochemistry 220, 615-21.
18. Lesch K.P., Wolozin B.L., Estler H.C., Murphy D.L. & Riederer P. (1993) Isolation of a cDNA encoding the human brain serotonin transporter. Journal of Neural Transmission General Section 91, 67-72.
19. McQueen H.A., Fantes J., Cross S.H., Clark V.H., Archibald A.L. & Bird A.P. (1996) CpG islands of chicken are concentrated on microchromosomes. Nature Genetics 12, 321-4.
20. Nizetic D., Drmanac R. & Lehrach H. (1991) An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids. Nucleic Acids Research 19, 182.
21. Primmer C.R., Raudsepp T., Chowdhary B.P., Moller A.P. & Ellegren H. (1997) Low frequency of micro-satellites in the avian genome. Genome Research 7, 471-82.
22. Rouault J.P., Samarut C., Duret L., Tessa C., Samarut J. & Magaud J.P. (1993) Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3′ non-coding regions. Gene 129, 303-6.
23. Sawada K., Agata K. & Eguchi G. (1996) Characterization of terminally differentiated cell state by categorizing cDNA clones derived from chicken lens fibers. International Journal of Developmental Biology 40, 531-5.
24. Solinas Toldo S., Fries R., Steffen P. et al. (1993) Physically mapped, cosmid-derived microsatellite markers as anchor loci on bovine chromosomes. Mammalian Genome 4, 720-7.
25. Takeuchi S., Suzuki S., Hirose S. et al. (1996) Molecular cloning and sequence analysis of the chick melanocortin 1-receptor gene. Biochimica et Biophysica Acta 1306, 122-6.
26. Toye A.A., Schalkwyk L., Lehrach H. & Bumstead N. (1997) A yeast artificial chromosome (YAC) library containing 10 haploid chicken genome equivalents. Mammalian Genome 8, 274-6.
27. Wahl G.M., Lewis K.A., Ruiz J.C., Rothenburg B., Zhao J. & Evans G.A. (1987) Cosmid vectors for rapid genomic walking, restriction mapping and gene transfer. Proceedings of the National Academy of Sciences USA 84, 2160-4.
28. Zimmer R. & Gibbins A.M.V. (1997) Construction and characterization of a large-fragment chicken bacterial artificial chromosome library. Genomics 42, 217-26.