Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds

Chromosome Research

Volumn 13, Issue 7, 2005, Pages 665-673

  Coullin, Philippe ^a,c   Bed'Hom, B ^b   Candelier, J J ^c   Vettese, D ^a   Maucolin, S ^a   Moulin, S ^d   Galkina, S A ^e   Bernheim, A ^a   Volobouev, V ^d  

^a INSTITUT GUSTAVE ROUSSY   (France)

^b CEMAGREF   (France)

^c INSERM   (France)

^d MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^e ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

Author keywords

Birds; Chicken; CR1 sequences; Galliformes; PRINS

Indexed keywords

PRIMER DNA;

ANIMAL CELL; ARTICLE; CHICKEN; CHROMOSOME ANALYSIS; CHROMOSOME BANDING PATTERN; CHROMOSOME STRUCTURE; CONTROLLED STUDY; CONVERGENT EVOLUTION; DUCKS AND GEESE; EMBRYO; EPIGENETICS; GENETIC CONSERVATION; GENETIC ISOLATION BY DISTANCE; GENOME ANALYSIS; INTERSPERSED REPEAT; KARYOTYPE; KARYOTYPING; LONG INTERSPERSED REPEAT; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIMED IN SITU LABELING; PRIORITY JOURNAL; RETROPOSON; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; TELOMERE;

ANIMALS; BASE SEQUENCE; BIRDS; CELLS, CULTURED; CHICKENS; CHROMOSOME BANDING; CHROMOSOMES; CONSERVED SEQUENCE; CYTOGENETICS; EMBRYO; EMBRYO, NONMAMMALIAN; FLUORESCEINS; FLUORESCENT DYES; GALLIFORMES; GENOME; IN SITU HYBRIDIZATION, FLUORESCENCE; INDOLES; KARYOTYPING; PHYLOGENY; PRIMED IN SITU LABELING; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS; SKIN;

ANSERIFORMES; AVES; FALCONIFORMES; GALLIFORMES; INVERTEBRATA; MAMMALIA; PASSERIFORMES; VERTEBRATA;

EID: 26944434305     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-005-1004-7     Document Type: Article

References (31)

1. Andreozzi L, Federico C, Motta S et al. (2001) Compositional mappings of chicken chromosomes and identification of gene-richest regions. Chromosom Res 9: 521-532.
2. Candelier JJ, Mollicone R, Mennesson B, Coullin P, Oriol R (2000) Expression of fucosyltransferases in skin, conjunctiva and cornea during human development. Histochem Cell Biol 114: 113-124.
3. Chen ZQ, Ritzel RG, Lin CC, Hodgetts RB (1991) Sequence conservation in avian CR1: an interspersed repetitive DNA family evolving under functional constraints. Proc Natl Acad Sci USA 88: 5814-5818.
4. Coullin P, Andreo B, Charlieu JP, Candelier JJ, Pellestor F (1997) Primed in situ (PRINS) labelling with Alu and satellite primers for rapid characterization of human chromosomes in hybrid cell lines. Chromosom Res 5: 307-312.
5. Coullin P, Philippe C, Ravisé N, Bernheim A (1999) Simultaneous fluorescence in situ hybridization (FISH) and R-banding by Primed in situ labelling (PRINS). Chromosom Res 7: 241-242.
6. Coullin, P, Bed'Hom, B, Guillier-Gencik, Z, Moulin, S, Bernheim, A (2001) Distribution of telomeric sequences in galliform species evidenced by PRINS and FISH. Poster 1-074 Third European Cytogenetic Conference, Paris, July 7-10, 2001, Abstract 1-074 Annales génétique 44: suppl. 1, s43.
7. Coullin P, Crooijmans RPMA, Oriol R et al. (2003) Evolution of chicken fucosyltransferases genes of chicken compared to human. Cytogenet Genome Res 103: 111-121.
8. Derjusheva S, Kurganova A, Habermann F, Gaginskaya E (2004) High chromosome conservation detected by comparative chromosome painting in chicken, pigeon and passerine birds. Chromosom Res 12: 715-723.
9. Drew AC, Brindley PJ (1997) A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates. Mol Biol Evol 14: 602-610.
10. Hass NB, Grabowski JM, Silvitz AB, Burch JB (1997) Chicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR rerotransposons, contain two closely spaced open reading frames. Gene 197: 305-309.
11. Hass NB, Grabowski JM, North J, Moran JV, Kazazian HH, Burch JB (2001) Subfamillies of CR1 non-LTR retrotransposons have different 5′UTR sequences but are otherwise conserved. Gene 267: 175-183.
12. International Chicken Genome Sequence Consortium (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
13. Jurka J (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 16: 418-420.
14. Kajikawa M, Ohshima K, Okada N (1997) Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zing finger motif. Mol Biol Evol 14: 1206-1217.
15. Koch JE, Kolvraa S, Petersen KB, Gregersen N, Bolund L (1989) Oligonucleotide-priming methods for the chromosome-specific labelling of alpha satellite DNA in situ. Chromosoma 98: 259-265.
16. Kohler CD, Schaadt CP, Vekemans MJJ (1989) Chromosome banding studies of the osprey Pandion haliaetus (Aves, Falconiformes). Genome 32: 1037-1040.
17. Ladjali K, Tixier-Boichard M, Cribiu EP (1995) High-resolution chromosome preparations for G- and R-banding in Gallus domesticus. J Heredity 86: 136-139.
18. Ladjali-Mohammedi K, Bitgood JJ, Tixier-Boichard M, Ponce De Leon FA (1999) International system for standardized avian karyotypes (ISSAK): standardized banded karyotypes of the domestic fowl (Gallus domesticus). Cytogenet Cell Genet 86: 271-276.
19. Levin I, Crittenden LB, Dodgson JB (1994) Mapping DNA polymorphisms using PCR primers derived from the sequence of avian CR1 element. J Heredity 85: 73-78.
20. Nanda I, Schrama D, Feichtinger W, Haaf T, Schartl M, Schmid M (2002) Distribution of telomeric (TTAGGG)n sequences in avian chromosomes. Chromosome 111: 215-227.
21. Olofsson B, Bernardi G (1983) The distribution of CR1, and Alu-like family of interspersed repeats, in the chicken genome. Biochim Biophys Acta 740: 339-341.
22. Poulter R, Butler M, Ormandy J (1999) A LINE element from the pufferfish (fugu). Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposons. Gene 227: 169-179.
23. Sanzo M, Stevens B, Tsai MJ, O'Malley BW (1984) Isolation of protein fraction that binds preferentially to chicken middle repetitive DNA. Biochemistry 23: 6491-6498.
24. Schmid M, Nanda I, Guttenbach M et al. (2000) First report on chicken genes and chromosomes. Cytogenet Cell Genet 90: 169-218
25. Shapira E, Yarus S, Fainsod A (1991) Genomic organization and expression during embryogenesis of the chicken CR1 repeat. Genomics 10: 931-939.
26. Silva R, Burch JB (1989) Evidence that chicken CR1 elements represent a novel family of retroposons. Mol Cell Biol 9: 3563-3566.
27. Stumph WE, Kristo P, Tsai MJ, O'Malley BW (1981): A chicken middle-repetitive DNA sequence which shares homology with mammalian ubiquitous repeats. Nucleic Acids Res 9: 5383-5397.
28. Stumph WE, Hogson CP, Tsai MJ, O'Malley BW (1984) Genomic structure and possible retroviral origin of the chicken CR1 repetitive DNA sequence family. Proc Natl Acad Sci USA 81: 6667-6671.
29. Vandergon TL, Reitman M (1994) Evolution of chicken repeat 1 (CR1) elements: evidence for ancient subfamilies and multiple progenitors. Mol Biol Evol 11: 886-898.
30. Wicker T, Robertson JS, Schulze SR et al. (2005) The repetitive landscape of the chicken genome. Genome Res 15: 126-136.
31. Zoubac S, Clay O, Bernardi G (1996) The gene distribution of the human genome. Gene 174: 95-102.