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Volumn 49, Issue 12, 2009, Pages 2749-2760

Molecular docking of carbohydrate ligands to antibodies: Structural validation against crystal structures

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; BINDING SITES; CARBOHYDRATES; CELL MEMBRANES; CRYSTALS; DISEASES; LIGANDS; MOLECULAR MODELING;

EID: 73349128445     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci900388a     Document Type: Article
Times cited : (68)

References (59)
  • 3
    • 3042561937 scopus 로고    scopus 로고
    • Structural convergence of antibody binding of carbohydrate determinants in Lewis y tumor antigens
    • Ramsland, P. A.; Farrugia, W.; Bradford, T. M.; Mark Hogarth, P.; Scott, A. M. Structural convergence of antibody binding of carbohydrate determinants in Lewis Y tumor antigens. J. Mol. Bio. 2004, 340, 809-818.
    • (2004) J. Mol. Bio. , vol.340 , pp. 809-818
    • Ramsland, P.A.1    Farrugia, W.2    Bradford, T.M.3    Mark Hogarth, P.4    Scott, A.M.5
  • 7
    • 54449089342 scopus 로고    scopus 로고
    • In vivo enzymatic modulation of IgG glycosylation inhibits autoimmune disease in an IgG subclass-dependent manner
    • Albert, H.; Collin, M.; Dudziak, D.; Ravetch, J. V.; Nimmerjahn, F. In vivo enzymatic modulation of IgG glycosylation inhibits autoimmune disease in an IgG subclass-dependent manner. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 15005-15009.
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 15005-15009
    • Albert, H.1    Collin, M.2    Dudziak, D.3    Ravetch, J.V.4    Nimmerjahn, F.5
  • 8
    • 22944476837 scopus 로고    scopus 로고
    • The α-gal epitope and the anti-Gal antibody in xenotransplantation and in cancer immunotherapy
    • DOI 10.1111/j.1440-1711.2005.01366.x
    • Galili, U. The alpha-gal epitope and the anti-Gal antibody in xenotransplantation and in cancer immunotherapy, Immmol, Cell Biol. 2005, 83, 674-686. (Pubitemid 43083100)
    • (2005) Immunology and Cell Biology , vol.83 , Issue.6 , pp. 674-686
    • Galili, U.1
  • 10
    • 0028171348 scopus 로고
    • Galalpha(1,3)Gal, the major xenoantigen(s) recognised in pigs by human natural antibodies
    • Sandrin, M. S.; McKenzie, I. F. Gal alpha (.1,3)Gal, the major xenoantigen(s) recognised in pigs by human natural antibodies. Immunol. Rev- 1994, 141, 169-190. (Pubitemid 2156982)
    • (1994) Immunological Reviews , vol.141 , pp. 169-190
    • Sandrin, M.S.1    McKenzie, I.F.C.2
  • 12
    • 45549091317 scopus 로고    scopus 로고
    • Cetuximab-indueed anaphylaxis and IgE specific for galactose-alpha-1,3- galactose
    • (author reply 2735-2736).
    • Arnold, D. F.; Misbah, S. A. Cetuximab-indueed anaphylaxis and IgE specific for galactose-alpha-1,3-galactose. N. Engl J. Med. 2008, 358, 2735 (author reply 2735-2736).
    • (2008) N. Engl J. Med. , vol.358 , pp. 2735
    • Arnold, D.F.1    Misbah, S.A.2
  • 15
    • 23044467529 scopus 로고    scopus 로고
    • Molecular modeling of cardiac glycoside binding by the human sequence monoclonal antibody 1B3
    • Paula, S.; Monson, N.; Ball, W. J., Jr. Molecular modeling of cardiac glycoside binding by the human sequence monoclonal antibody 1B3. Proteins 2005, 60, 382-391.
    • (2005) Proteins , vol.60 , pp. 382-391
    • Paula, S.1    Monson, N.2    Ball Jr., W.J.3
  • 16
    • 66149087635 scopus 로고    scopus 로고
    • Docking ligands into flexible and solvated macromolecules. 3. Impact of input ligand conformation, protein flexibility, and water molecules on the accuracy of docking programs
    • Corbeil, C. R.; Moitessier, N. Docking ligands into flexible and solvated macromolecules. 3. Impact of input ligand conformation, protein flexibility, and water molecules on the accuracy of docking programs. J. Chem., Inf., Model. 2009, 49, 997-1009.
    • (2009) J. Chem., Inf., Model. , vol.49 , pp. 997-1009
    • Corbeil, C.R.1    Moitessier, N.2
  • 17
    • 66149103553 scopus 로고    scopus 로고
    • Comparative assessment of scoring functions on a diverse test set
    • Cheng, T.; Li, X.; Li, Y.; Liu, Z. C.; Wang, R. Comparative assessment of scoring functions on a diverse test set. J. Chem. Inf. Model. 2009, 49, 1079-1093.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 1079-1093
    • Cheng, T.1    Li, X.2    Li, Y.3    Liu, Z.C.4    Wang, R.5
  • 18
    • 67650097331 scopus 로고    scopus 로고
    • Comparison of several molecular docking programs: Pose prediction, and virtual screening accuracy
    • Cross, J. B.; Thompson, D. C.; Rai, B. K.; Baber, .T. C.; Fan, K. Y.; Hu, Y.; Humblet, C. Comparison of several molecular docking programs: Pose prediction, and virtual screening accuracy. J. Chem. Inf. Model 2009, 49, 1455-1474.
    • (2009) J. Chem. Inf. Model , vol.49 , pp. 1455-1474
    • Cross, J.B.1    Thompson, D.C.2    Rai, B.K.3    Baber, T.C.4    Fan, K.Y.5    Hu, Y.6    Humblet, C.7
  • 19
    • 26444468103 scopus 로고    scopus 로고
    • General and targeted statistical potentials for protein-ligand interactions
    • Mooij, W. T.; Verdonk, M. L. General and targeted statistical potentials for protein-ligand interactions. Proteins 2005, 61, 272-287.
    • (2005) Proteins , vol.61 , pp. 272-287
    • Mooij, W.T.1    Verdonk, M.L.2
  • 21
    • 46049089604 scopus 로고    scopus 로고
    • Comparison of docking methods for carbohydrate binding in. calcium-dependent lectins and prediction of the carbohydrate binding mode to sea cucumber lectin CEL-III
    • Nurisso, A.; Kozmon, S.; Imberty, A. Comparison of docking methods for carbohydrate binding in. calcium-dependent lectins and prediction of the carbohydrate binding mode to sea cucumber lectin CEL-III. Mol. Simul. 2008, 34, 469-479.
    • (2008) Mol. Simul. , vol.34 , pp. 469-479
    • Nurisso, A.1    Kozmon, S.2    Imberty, A.3
  • 22
    • 42449155497 scopus 로고    scopus 로고
    • Qystallographic and computational studies on 4-phenyl-N-(beta-D- gluapyranasyl)-lH-l,2,3-triazole-l-acetamide, an inhibitor of glycogen. phosphorylase: Comparison with alpha-D-glucose, N-acetylbeta-D- glucopyranosylamine and N-benzoyl-N'-beta-D-glucopyranosyl urea binding
    • Alexacou, K. M.; Hayes, .T. M.; Tiraidis, C.; Zographos, S. E.; Leonidas, D. D.; Chrysina, E. D. Archontis, G. Oikonomakos, N. G.; Paul, J. V.; Varghese, B.; Loganathan, D. Qystallographic and computational studies on 4-phenyl-N-(beta-D-gluapyranasyl)-lH-l,2,3-triazole-l-acetamide, an inhibitor of glycogen. phosphorylase: Comparison with alpha-D-glucose, N-acetylbeta-D- glucopyranosylamine and N-benzoyl-N'-beta-D-glucopyranosyl urea binding. Proteins 2008, 71, 1307-1323.
    • (2008) Proteins , vol.71 , pp. 1307-1323
    • Alexacou, K.M.1    Hayes, T.M.2    Tiraidis, C.3    Zographos, S.E.4    Leonidas, D.D.5    Chrysina, E.D.6    Archontis, G.7    Oikonomakos, N.G.8    Paul, J.V.9    Varghese, B.10    Loganathan, D.11
  • 23
    • 0034257149 scopus 로고    scopus 로고
    • Automated docking of alpha(1→4)- And alpha-(l→6)-linked glucosyl trisacdiarides and maltopentaose into the soybean beta-amylase active site
    • Rockey, W. M.; Laederach, A.; Reilly, P. J. Automated docking of alpha(1→4)- and alpha-(l→6)-linked glucosyl trisacdiarides and maltopentaose into the soybean beta-amylase active site. Proteins 2000, 40, 299-309.
    • (2000) Proteins , vol.40 , pp. 299-309
    • Rockey, W.M.1    Laederach, A.2    Reilly, P.J.3
  • 25
    • 33745728310 scopus 로고    scopus 로고
    • Shapes of antibody binding sites: Qualitative and quantitative analyses based on a geomorphic classification scheme
    • Lee, M.; Lloyd, P.; Zhang, X.; Schallhorn, J. M.; Sugimoto, K.; Leach, A. G.; Sapiro, G.; Houk, K. N. Shapes of antibody binding sites: Qualitative and quantitative analyses based on a geomorphic classification scheme. J. Qrg. Chem 2006, 71, 5082-5092.
    • (2006) J. Qrg. Chem , vol.71 , pp. 5082-5092
    • Lee, M.1    Lloyd, P.2    Zhang, X.3    Schallhorn, J.M.4    Sugimoto, K.5    Leach, A.G.6    Sapiro, G.7    Houk, K.N.8
  • 26
    • 50249132694 scopus 로고    scopus 로고
    • Protein-ligand docking with multiple flexible side chains
    • Zhao, Y.; Sanner, M. F. Protein-ligand docking with multiple flexible side chains. J. Comput.-Aided Mol. Des. 2008, 22, 673-679.
    • (2008) J. Comput.-Aided Mol. des. , vol.22 , pp. 673-679
    • Zhao, Y.1    Sanner, M.F.2
  • 28
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace, A. C.; Laskowski, R. A.; Thornton, J. M. LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng. 1995, 8, 127-134.
    • (1995) Protein Eng. , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 29
    • 0037137222 scopus 로고    scopus 로고
    • Molecular recognition of oligosaccharide epitopes by a monoclonal Fab specific for Shigella flexneri y lipopolysaccharide: X-ray structures and thermodynamics
    • Vyas, N. K.; Vyas, M. N.; Chervenak, M. C.; Johnson, M. A.; Pinto, B. M.; Bundle, D. R.; Quiocho, F. A. Molecular recognition of oligosaccharide epitopes by a monoclonal Fab specific for Shigella flexneri Y lipopolysaccharide: X-ray structures and thermodynamics. Biochemistry 2002, 41, 13575-13586.
    • (2002) Biochemistry , vol.41 , pp. 13575-13586
    • Vyas, N.K.1    Vyas, M.N.2    Chervenak, M.C.3    Johnson, M.A.4    Pinto, B.M.5    Bundle, D.R.6    Quiocho, F.A.7
  • 31
    • 0027245663 scopus 로고
    • Recognition of a carbohydrate antigenic determinant of Salmonella by an antibody
    • Cygler, M.; Wu, S.; Zdanov, A.; Bundle, D. R.; Rose, D. R. Recognition of a carbohydrate antigenic determinant of Salmonella by an antibody. Biochem. Soc. Trans. 1993, 21, 437-441.
    • (1993) Biochem. Soc. Trans. , vol.21 , pp. 437-441
    • Cygler, M.1    Wu, S.2    Zdanov, A.3    Bundle, D.R.4    Rose, D.R.5
  • 32
    • 0028300617 scopus 로고
    • Solution structure of a trisaccharide-antibody complex: Comparison of NMR measurements with a crystal structure
    • DOI 10.1021/bi00183a023
    • Bundle, D. R.; Baumann, H.; Brisson, J. R.; Gagne, S. M.; Zdanov, A.; Cygler, M. Solution structure of a trisaccharide-antibody complex: Comparison of NMR measurements with a crystal structure. Biochemistry 1994, 33, 5183-5192. (Pubitemid 24150985)
    • (1994) Biochemistry , vol.33 , Issue.17 , pp. 5183-5192
    • Bundle, D.R.1    Baumann, H.2    Brisson, J.-R.3    Gagne, S.M.4    Zdanov, A.5    Cygler, M.6
  • 33
    • 0026319774 scopus 로고
    • Recognition, of a cell-surface oligosaccharide of pathogenic Salmonella by an antibody Fab fragment
    • Cygler, M.; Rose, D. R.; Bundle, D. R. Recognition, of a cell-surface oligosaccharide of pathogenic Salmonella by an antibody Fab fragment. Science 1991, 253, 442-445.
    • (1991) Science , vol.253 , pp. 442-445
    • Cygler, M.1    Rose, D.R.2    Bundle, D.R.3
  • 34
    • 0029200101 scopus 로고
    • Molecular modeling of antibodycombining sites
    • Webster, D. M.; Rees, A. R. Molecular modeling of antibodycombining sites. Methods Mol. Biol. 1995, 51, 17-49.
    • (1995) Methods Mol. Biol. , vol.51 , pp. 17-49
    • Webster, D.M.1    Rees, A.R.2
  • 36
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267, 727-748.
    • (1997) J. Mol. Biol. , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 37
    • 22944433255 scopus 로고    scopus 로고
    • Three dimensional structures of carbohydrate determinants of Lewis system, antigens: Implications for effective antibody targeting of cancer
    • Yuriev, E.; Farrugia, W.; Scott, A. M.; Ramsland, P. A. Three dimensional structures of carbohydrate determinants of Lewis system, antigens: Implications for effective antibody targeting of cancer. Immunol. Cell Biol. 2005, 83, 709-717.
    • (2005) Immunol. Cell Biol. , vol.83 , pp. 709-717
    • Yuriev, E.1    Farrugia, W.2    Scott, A.M.3    Ramsland, P.A.4
  • 38
    • 11644261806 scopus 로고    scopus 로고
    • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    • Moreis, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 1998, 19, 1639-1662.
    • (1998) J. Comput. Chem. , vol.19 , pp. 1639-1662
    • Moreis, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4    Hart, W.E.5    Belew, R.K.6    Olson, A.J.7
  • 39
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • DOI 10.1006/jmbi.1996.0477
    • Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol. 1996, 261, 470-489. (Pubitemid 26335901)
    • (1996) Journal of Molecular Biology , vol.261 , Issue.3 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 41
    • 41349106585 scopus 로고    scopus 로고
    • Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection-What can we learn from earlier mistakes
    • Kirchmair, J.; Markt, P.; Distinto, S.; Wolber, G.; Langer, T. Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection-What can we learn from earlier mistakes. J. Comput.-Aided Mol. Pes. 2008, 22, 213-228.
    • (2008) J. Comput.-Aided Mol. Pes. , vol.22 , pp. 213-228
    • Kirchmair, J.1    Markt, P.2    Distinto, S.3    Wolber, G.4    Langer, T.5
  • 42
    • 70450242830 scopus 로고    scopus 로고
    • In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies
    • Agostino, M.; Sandrin, M. S.; Thompson, P. E.; Yuriev, E.; Ramsland, P. A. In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies. Mol. Immunol 2009, 47, 233-246.
    • (2009) Mol. Immunol , vol.47 , pp. 233-246
    • Agostino, M.1    Sandrin, M.S.2    Thompson, P.E.3    Yuriev, E.4    Ramsland, P.A.5
  • 43
    • 84892166712 scopus 로고
    • Einfluss der kconfiguration auf die Wirkung der enzyme
    • Fischer, E. Einfluss der kconfiguration auf die Wirkung der enzyme. Ber. Dtsch. Chem Ges. 1894, 27, 2985-2993.
    • (1894) Ber. Dtsch. Chem Ges. , vol.27 , pp. 2985-2993
    • Fischer, E.1
  • 44
    • 2442700490 scopus 로고    scopus 로고
    • Partial cell functions, Nobel Lecture, December 11, 1908
    • Elsevier: Amsterdam, 1967
    • Ehrlich, P., Partial cell functions, Nobel Lecture, December 11, 1908. In Nobel Lectures, Physiology or Medicine 1901-1921; Elsevier: Amsterdam, 1967; pp 304-320.
    • Nobel Lectures, Physiology or Medicine 1901-1921 , pp. 304-320
    • Ehrlich, P.1
  • 45
    • 33750639677 scopus 로고
    • The key-lock theory and the induced fit theory
    • Koshland, D. E., Jr. The key-lock theory and the induced fit theory. Angew. Chem., Int. Ed., Engl. 1994, 33, 2375-2378.
    • (1994) Angew. Chem., Int. Ed., Engl. , vol.33 , pp. 2375-2378
    • Koshland Jr., D.E.1
  • 46
    • 0001858251 scopus 로고
    • Application of a theory of enzyme specificity to protein synthesis
    • Koshland, D. E., Jr. Application of a theory of enzyme specificity to protein synthesis. Proc. Natl. Acad. Sci. U.S.A. 1958, 44, 98-104.
    • (1958) Proc. Natl. Acad. Sci. U.S.A. , vol.44 , pp. 98-104
    • Koshland Jr., D.E.1
  • 47
    • 0025939121 scopus 로고
    • An autoantibody to single-stranded DNA: Comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex
    • Herron, J. N.; He, X. M.; Ballard, D. W.; Blier, P. R.; Pace, P. E.; Bothwell, A. L.; Voss, E. W., Jr.; Edmundson, A. B. An autoantibody to single-stranded DNA: Comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Proteins 1991, 11, 159-175.
    • (1991) Proteins , vol.11 , pp. 159-175
    • Herron, J.N.1    He, X.M.2    Ballard, D.W.3    Blier, P.R.4    Pace, P.E.5    Bothwell, A.L.6    Voss Jr., E.W.7    Edmundson, A.B.8
  • 48
    • 0037470496 scopus 로고    scopus 로고
    • Antibody multispecificity mediated by conformational diversity
    • James, L. C.; Roversi, P.; Tawfik, D. S. Antibody multispecificity mediated by conformational diversity. Science 2003, 299, 1362-1367.
    • (2003) Science , vol.299 , pp. 1362-1367
    • James, L.C.1    Roversi, P.2    Tawfik, D.S.3
  • 49
    • 4444357238 scopus 로고    scopus 로고
    • Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylucosamine ligands
    • Allen, M. J.; Laederach, A.; Reilly, P. J.; Mason, R. J.; Voelker, D. R. Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylucosamine ligands. Glycobiology 2004, 14, 693-700.
    • (2004) Glycobiology , vol.14 , pp. 693-700
    • Allen, M.J.1    Laederach, A.2    Reilly, P.J.3    Mason, R.J.4    Voelker, D.R.5
  • 50
    • 48349097076 scopus 로고    scopus 로고
    • Theory and computation, show that Asp463 is the catalytic proton donor in human endoplasmic reticulum alpha(l--2)-mannosidase i
    • Cantu, D.; Nerinckx, W.; Reilly, P. J. Theory and computation, show that Asp463 is the catalytic proton donor in human endoplasmic reticulum alpha(l--2)-mannosidase I. Carbohvdr. Res. 2008, 343, 2235-2242.
    • (2008) Carbohvdr. Res. , vol.343 , pp. 2235-2242
    • Cantu, D.1    Nerinckx, W.2    Reilly, P.J.3
  • 51
    • 35948940813 scopus 로고    scopus 로고
    • Automated docking to explore subsite binding by glycoside hydrolase family 6 cellobiohydrolases and endoglucanases
    • Mertz, B.; Hill, A. D.; Mulakala, C.; Reilly, P. J. Automated docking to explore subsite binding by glycoside hydrolase family 6 cellobiohydrolases and endoglucanases. Biopolymers 2007, 87, 249-260.
    • (2007) Biopolymers , vol.87 , pp. 249-260
    • Mertz, B.1    Hill, A.D.2    Mulakala, C.3    Reilly, P.J.4
  • 52
    • 33746214602 scopus 로고    scopus 로고
    • Docking studies on glycoside hydrolase family 47 endoplasmic reticulum alpha-(l→2)-mannosidase i to elucidate the pathway to the substrate transition state
    • Mulakala, C.; Nerinckx, W.; Reilly, P. J. Docking studies on glycoside hydrolase family 47 endoplasmic reticulum alpha-(l→2)-mannosidase I to elucidate the pathway to the substrate transition state. Carbohvdr. Res. 2006, 341, 2233-2245.
    • (2006) Carbohvdr. Res. , vol.341 , pp. 2233-2245
    • Mulakala, C.1    Nerinckx, W.2    Reilly, P.J.3
  • 53
    • 0036783337 scopus 로고    scopus 로고
    • Understanding protein structure-function relationships in family 47 alpha-1,2-mannosidases through computational docking of ligands
    • Mulakala, C.; Reilly, P. J. Understanding protein structure-function relationships in family 47 alpha-1,2-mannosidases through computational docking of ligands. Proteins 2002, 49, 125-134.
    • (2002) Proteins , vol.49 , pp. 125-134
    • Mulakala, C.1    Reilly, P.J.2
  • 54
    • 0035800084 scopus 로고    scopus 로고
    • Polysaccharide recognition by surfactant protein D: Novel interactions of a C-type lectin with nonterminal glucosyl residues
    • Allen, M. J.; Laederach, A.; Reilly, P. J.; Mason, R. J. Polysaccharide recognition by surfactant protein D: Novel interactions of a C-type lectin with nonterminal glucosyl residues. Biochemistry 2001, 40, 7789-7798.
    • (2001) Biochemistry , vol.40 , pp. 7789-7798
    • Allen, M.J.1    Laederach, A.2    Reilly, P.J.3    Mason, R.J.4
  • 55
    • 27544446449 scopus 로고    scopus 로고
    • Force calculations in automated docking: Enzyme-substrate interactions in Fusarium oxvsporum Cel7B
    • Mulakala, C.; Reilly, P. J. Force calculations in automated docking: Enzyme-substrate interactions in Fusarium oxvsporum Cel7B. Proteins 2005, 61, 590-596.
    • (2005) Proteins , vol.61 , pp. 590-596
    • Mulakala, C.1    Reilly, P.J.2
  • 56
    • 0141990820 scopus 로고    scopus 로고
    • Specific empirical free energy function for automated docking of carbohydrates to proteins
    • Laederach, A.; Reilly, P. J. Specific empirical free energy function for automated docking of carbohydrates to proteins. J. Comput. Chem. 2003, 24, 1748-1757.
    • (2003) J. Comput. Chem. , vol.24 , pp. 1748-1757
    • Laederach, A.1    Reilly, P.J.2
  • 57
    • 42149171336 scopus 로고    scopus 로고
    • A Gibbs free energy correlation for automated docking of carbohydrates
    • Hill, A. D.; Reilly, P. J. A Gibbs free energy correlation for automated docking of carbohydrates. J. Comput. Chem. 2008, 29, 1131-1141.
    • (2008) J. Comput. Chem. , vol.29 , pp. 1131-1141
    • Hill, A.D.1    Reilly, P.J.2
  • 58
    • 4544367743 scopus 로고    scopus 로고
    • Comparative evaluation of eight docking tools for docking and virtual screening accuracy
    • DOI 10.1002/prot.20149
    • Kellenberger, E.; Rodrigo, J.; Muller, P.; Rognan, D. Comparative evaluation of eight docking tools for docking and virtual screening accuracy. Proteins 2004, 57, 225-242. (Pubitemid 39223729)
    • (2004) Proteins: Structure, Function and Genetics , vol.57 , Issue.2 , pp. 225-242
    • Kellenberger, E.1    Rodrigo, J.2    Muller, P.3    Rognan, D.4


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