-
1
-
-
0036301809
-
Ribonucleotide reductases: divergent evolution of an ancient enzyme
-
10.1007/s00239-002-2311-7, 12107591
-
Torrents E, Aloy P, Gibert I, Rodríguez-Trelles F. Ribonucleotide reductases: divergent evolution of an ancient enzyme. J Mol Evol 2002, 55:138-52. 10.1007/s00239-002-2311-7, 12107591.
-
(2002)
J Mol Evol
, vol.55
, pp. 138-152
-
-
Torrents, E.1
Aloy, P.2
Gibert, I.3
Rodríguez-Trelles, F.4
-
2
-
-
0036306498
-
The evolution of the ribonucleotide reductases: much ado about oxygen
-
10.1007/s00239-002-2315-3, 12107594
-
Poole AM, Logan DT, Sjöberg B-M. The evolution of the ribonucleotide reductases: much ado about oxygen. J Mol Evol 2002, 55:180-96. 10.1007/s00239-002-2315-3, 12107594.
-
(2002)
J Mol Evol
, vol.55
, pp. 180-196
-
-
Poole, A.M.1
Logan, D.T.2
Sjöberg, B.-.M.3
-
3
-
-
0032023777
-
Protein radicals in enzyme catalysis
-
10.1021/cr9400875, 11848913
-
Stubbe J, Donk W. Protein radicals in enzyme catalysis. Chem Rev 1998, 98:705-762. 10.1021/cr9400875, 11848913.
-
(1998)
Chem Rev
, vol.98
, pp. 705-762
-
-
Stubbe, J.1
Donk, W.2
-
4
-
-
0031688281
-
Ribonucleotide reductases
-
10.1146/annurev.biochem.67.1.71, 9759483
-
Jordan A, Reichard P. Ribonucleotide reductases. Annu Rev Biochem 1998, 67:71-98. 10.1146/annurev.biochem.67.1.71, 9759483.
-
(1998)
Annu Rev Biochem
, vol.67
, pp. 71-98
-
-
Jordan, A.1
Reichard, P.2
-
5
-
-
33746370368
-
Ribonucleotide reductases
-
10.1146/annurev.biochem.75.103004.142443, 16756507
-
Nordlund P, Reichard P. Ribonucleotide reductases. Annu Rev Biochem 2006, 75:681-706. 10.1146/annurev.biochem.75.103004.142443, 16756507.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 681-706
-
-
Nordlund, P.1
Reichard, P.2
-
6
-
-
73149092338
-
The ribonucleotide reductase family - genetics and genomics. I
-
redigerad av Andersson KK NovaScience Publishers
-
Torrents E, Sahlin M, Sjöberg B-M. The ribonucleotide reductase family - genetics and genomics. I. Ribonucleotide reductase 2008, 17-78. redigerad av Andersson KK NovaScience Publishers.
-
(2008)
Ribonucleotide reductase
, pp. 17-78
-
-
Torrents, E.1
Sahlin, M.2
Sjöberg, B.-.M.3
-
7
-
-
34249939132
-
A manganese(IV)/iron(III) cofactor in Chlamydia trachomatis ribonucleotide reductase
-
10.1126/science.1141179, 17525338
-
Jiang W, Yun D, Saleh L. A manganese(IV)/iron(III) cofactor in Chlamydia trachomatis ribonucleotide reductase. Science 2007, 316:1188-1191. 10.1126/science.1141179, 17525338.
-
(2007)
Science
, vol.316
, pp. 1188-1191
-
-
Jiang, W.1
Yun, D.2
Saleh, L.3
-
8
-
-
34447282627
-
High catalytic activity achieved with a mixed manganese-iron site in protein R2 of Chlamydia ribonucleotide reductase
-
10.1016/j.febslet.2007.06.023, 17601579
-
Voevodskaya N, Lendzian F, Ehrenberg A, Gräslund A. High catalytic activity achieved with a mixed manganese-iron site in protein R2 of Chlamydia ribonucleotide reductase. FEBS Lett 2007, 581:3351-3355. 10.1016/j.febslet.2007.06.023, 17601579.
-
(2007)
FEBS Lett
, vol.581
, pp. 3351-3355
-
-
Voevodskaya, N.1
Lendzian, F.2
Ehrenberg, A.3
Gräslund, A.4
-
9
-
-
0030829520
-
Characterization of Escherichia coli NrdH. A glutaredoxin-like protein with a thioredoxin-like activity profile
-
10.1074/jbc.272.29.18044, 9218434
-
Jordan A, Åslund F, Pontis E, Reichard P, Holmgren A. Characterization of Escherichia coli NrdH. A glutaredoxin-like protein with a thioredoxin-like activity profile. J Biol Chem 1997, 272:18044-50. 10.1074/jbc.272.29.18044, 9218434.
-
(1997)
J Biol Chem
, vol.272
, pp. 18044-18050
-
-
Jordan, A.1
Åslund, F.2
Pontis, E.3
Reichard, P.4
Holmgren, A.5
-
10
-
-
0035929576
-
Structural basis for the thioredoxin-like activity profile of the glutaredoxin-like NrdH-redoxin from Escherichia coli
-
10.1074/jbc.M105094200, 11441020
-
Stehr M, Schneider G, Åslund F, Holmgren A, Lindqvist Y. Structural basis for the thioredoxin-like activity profile of the glutaredoxin-like NrdH-redoxin from Escherichia coli. J Biol Chem 2001, 276:35836-41. 10.1074/jbc.M105094200, 11441020.
-
(2001)
J Biol Chem
, vol.276
, pp. 35836-35841
-
-
Stehr, M.1
Schneider, G.2
Åslund, F.3
Holmgren, A.4
Lindqvist, Y.5
-
11
-
-
47349123990
-
NrdI essentiality for class Ib ribonucleotide reduction in Streptococcus pyogenes
-
10.1128/JB.00185-08, 2447006, 18502861
-
Roca I, Torrents E, Sahlin M, Gibert I, Sjöberg B-M. NrdI essentiality for class Ib ribonucleotide reduction in Streptococcus pyogenes. J Bacteriol 2008, 190:4849-4858. 10.1128/JB.00185-08, 2447006, 18502861.
-
(2008)
J Bacteriol
, vol.190
, pp. 4849-4858
-
-
Roca, I.1
Torrents, E.2
Sahlin, M.3
Gibert, I.4
Sjöberg, B.-.M.5
-
12
-
-
55749110597
-
NrdI, a flavodoxin involved in maintenance of the diferric-tyrosyl radical cofactor in Escherichia coli class Ib ribonucleotide reductase
-
10.1073/pnas.0807348105, 2567162, 18799738
-
Cotruvo JA, Stubbe J. NrdI, a flavodoxin involved in maintenance of the diferric-tyrosyl radical cofactor in Escherichia coli class Ib ribonucleotide reductase. Proc Natl Acad Sci USA 2008, 105:14383-14388. 10.1073/pnas.0807348105, 2567162, 18799738.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14383-14388
-
-
Cotruvo, J.A.1
Stubbe, J.2
-
13
-
-
0033615622
-
The anaerobic ribonucleotide reductase from Escherichia coli. The small protein is an activating enzyme containing a [4fe-4s](2+) center
-
10.1074/jbc.274.44.31291, 10531327
-
Tamarit J, Mulliez E, Meier C, Trautwein A, Fontecave M. The anaerobic ribonucleotide reductase from Escherichia coli. The small protein is an activating enzyme containing a [4fe-4s](2+) center. J Biol Chem 1999, 274:31291-31296. 10.1074/jbc.274.44.31291, 10531327.
-
(1999)
J Biol Chem
, vol.274
, pp. 31291-31296
-
-
Tamarit, J.1
Mulliez, E.2
Meier, C.3
Trautwein, A.4
Fontecave, M.5
-
14
-
-
0035282866
-
Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods
-
10.1093/nar/29.5.1097, 29726, 11222759
-
Sofia HJ, Chen G, Hetzler BG, Reyes-Spindola JF, Miller NE. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Nucleic Acids Res 2001, 29:1097-106. 10.1093/nar/29.5.1097, 29726, 11222759.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1097-1106
-
-
Sofia, H.J.1
Chen, G.2
Hetzler, B.G.3
Reyes-Spindola, J.F.4
Miller, N.E.5
-
15
-
-
20644446065
-
Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling
-
10.1016/j.tig.2005.05.011, 15949864
-
Rodionov DA, Gelfand MS. Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling. Trends Genet 2005, 21:385-9. 10.1016/j.tig.2005.05.011, 15949864.
-
(2005)
Trends Genet
, vol.21
, pp. 385-389
-
-
Rodionov, D.A.1
Gelfand, M.S.2
-
16
-
-
33750462020
-
The Streptomyces NrdR transcriptional regulator is a Zn ribbon/ATP cone protein that binds to the promoter regions of class Ia and class II ribonucleotide reductase operons
-
10.1128/JB.00903-06, 1636249, 16950922
-
Grinberg I, Shteinberg T, Gorovitz B. The Streptomyces NrdR transcriptional regulator is a Zn ribbon/ATP cone protein that binds to the promoter regions of class Ia and class II ribonucleotide reductase operons. J Bacteriol 2006, 188:7635-44. 10.1128/JB.00903-06, 1636249, 16950922.
-
(2006)
J Bacteriol
, vol.188
, pp. 7635-7644
-
-
Grinberg, I.1
Shteinberg, T.2
Gorovitz, B.3
-
17
-
-
34447506556
-
NrdR controls differential expression of the Escherichia coli ribonucleotide reductase genes
-
10.1128/JB.00440-07, 1951866, 17496099
-
Torrents E, Grinberg I, Gorovitz-Harris B. NrdR controls differential expression of the Escherichia coli ribonucleotide reductase genes. J Bacteriol 2007, 189:5012-21. 10.1128/JB.00440-07, 1951866, 17496099.
-
(2007)
J Bacteriol
, vol.189
, pp. 5012-5021
-
-
Torrents, E.1
Grinberg, I.2
Gorovitz-Harris, B.3
-
18
-
-
0031743421
-
Profile hidden Markov models
-
10.1093/bioinformatics/14.9.755, 9918945
-
Eddy SR. Profile hidden Markov models. Bioinformatics 1998, 14:755-763. 10.1093/bioinformatics/14.9.755, 9918945.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
19
-
-
73149117582
-
HMMER
-
HMMER. , http://hmmer.janelia.org/
-
-
-
-
20
-
-
12244283680
-
Modeling the percolation of annotation errors in a database of protein sequences
-
10.1093/bioinformatics/18.12.1641, 12490449
-
Gilks WR, Audit B, De Angelis D, Tsoka S, Ouzounis CA. Modeling the percolation of annotation errors in a database of protein sequences. Bioinformatics 2002, 18:1641-9. 10.1093/bioinformatics/18.12.1641, 12490449.
-
(2002)
Bioinformatics
, vol.18
, pp. 1641-1649
-
-
Gilks, W.R.1
Audit, B.2
De Angelis, D.3
Tsoka, S.4
Ouzounis, C.A.5
-
21
-
-
0036084146
-
InBase: the Intein Database
-
10.1093/nar/30.1.383, 99080, 11752343
-
Perler FB. InBase: the Intein Database. Nucleic Acids Res 2002, 30:383-4. 10.1093/nar/30.1.383, 99080, 11752343.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 383-384
-
-
Perler, F.B.1
-
22
-
-
0028441183
-
Representation of the secondary and tertiary structure of group I introns
-
10.1038/nsb0594-273, 7545072
-
Cech TR, Damberger SH, Gutell RR. Representation of the secondary and tertiary structure of group I introns. Nat Struct Biol 1994, 1:273-80. 10.1038/nsb0594-273, 7545072.
-
(1994)
Nat Struct Biol
, vol.1
, pp. 273-280
-
-
Cech, T.R.1
Damberger, S.H.2
Gutell, R.R.3
-
23
-
-
0030786551
-
Borrelia burgdorferi uridine kinase: an enzyme of the pyrimidine salvage pathway for endogenous use of nucleotides
-
10.1111/j.1574-6968.1997.tb12579.x, 9228761
-
Boursaux-Eude C, Margarita D, Gilles AM, Barzu O, Saint Girons I. Borrelia burgdorferi uridine kinase: an enzyme of the pyrimidine salvage pathway for endogenous use of nucleotides. FEMS Microbiol Lett 1997, 151:257-261. 10.1111/j.1574-6968.1997.tb12579.x, 9228761.
-
(1997)
FEMS Microbiol Lett
, vol.151
, pp. 257-261
-
-
Boursaux-Eude, C.1
Margarita, D.2
Gilles, A.M.3
Barzu, O.4
Saint Girons, I.5
-
24
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
10.1038/37551, 9403685
-
Fraser CM, Casjens S, Huang WM. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature 1997, 390:580-586. 10.1038/37551, 9403685.
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
-
25
-
-
33750009568
-
A small microbial genome: the end of a long symbiotic relationship?
-
10.1126/science.1130441, 17038625
-
Perez-Brocal V, Gil R, Ramos S. A small microbial genome: the end of a long symbiotic relationship?. Science 2006, 314:312-313. 10.1126/science.1130441, 17038625.
-
(2006)
Science
, vol.314
, pp. 312-313
-
-
Perez-Brocal, V.1
Gil, R.2
Ramos, S.3
-
26
-
-
29144442291
-
Structure of the substrate complex of thymidine kinase from Ureaplasma urealyticum and investigations of possible drug targets for the enzyme
-
10.1111/j.1742-4658.2005.05030.x, 16336273
-
Kosinska U, Carnrot C, Eriksson S, Wang L, Eklund H. Structure of the substrate complex of thymidine kinase from Ureaplasma urealyticum and investigations of possible drug targets for the enzyme. FEBS J 2005, 272:6365-6372. 10.1111/j.1742-4658.2005.05030.x, 16336273.
-
(2005)
FEBS J
, vol.272
, pp. 6365-6372
-
-
Kosinska, U.1
Carnrot, C.2
Eriksson, S.3
Wang, L.4
Eklund, H.5
-
27
-
-
0034641917
-
The complete sequence of the mucosal pathogen Ureaplasma urealyticum
-
10.1038/35037619, 11048724
-
Glass JI, Lefkowitz EJ, Glass JS. The complete sequence of the mucosal pathogen Ureaplasma urealyticum. Nature 2000, 407:757-762. 10.1038/35037619, 11048724.
-
(2000)
Nature
, vol.407
, pp. 757-762
-
-
Glass, J.I.1
Lefkowitz, E.J.2
Glass, J.S.3
-
28
-
-
0022485679
-
Purine-metabolising enzymes in Entamoeba histolytica
-
10.1016/0166-6851(86)90061-7, 2872591
-
Hassan HF, Coombs GH. Purine-metabolising enzymes in Entamoeba histolytica. Mol Biochem Parasitol 1986, 19:19-26. 10.1016/0166-6851(86)90061-7, 2872591.
-
(1986)
Mol Biochem Parasitol
, vol.19
, pp. 19-26
-
-
Hassan, H.F.1
Coombs, G.H.2
-
29
-
-
14544294428
-
The genome of the protist parasite Entamoeba histolytica
-
10.1038/nature03291, 15729342
-
Loftus B, Anderson I, Davies R. The genome of the protist parasite Entamoeba histolytica. Nature 2005, 433:865-868. 10.1038/nature03291, 15729342.
-
(2005)
Nature
, vol.433
, pp. 865-868
-
-
Loftus, B.1
Anderson, I.2
Davies, R.3
-
30
-
-
0024829261
-
Purine deoxynucleoside salvage in Giardia lamblia
-
Baum KF, Berens RL, Marr JJ, Harrington JA, Spector T. Purine deoxynucleoside salvage in Giardia lamblia. J Biol Chem 1989, 264:21087-21090.
-
(1989)
J Biol Chem
, vol.264
, pp. 21087-21090
-
-
Baum, K.F.1
Berens, R.L.2
Marr, J.J.3
Harrington, J.A.4
Spector, T.5
-
31
-
-
0025831040
-
The biology of Giardia spp
-
372844, 1779932
-
Adam RD. The biology of Giardia spp. Microbiol Rev 1991, 55:706-732. 372844, 1779932.
-
(1991)
Microbiol Rev
, vol.55
, pp. 706-732
-
-
Adam, R.D.1
-
32
-
-
38549146894
-
The Pfam protein families database
-
10.1093/nar/gkm960, 2238907, 18039703
-
Finn RD, Tate J, Mistry J. The Pfam protein families database. Nucleic Acids Res 2008, 36:D281-8. 10.1093/nar/gkm960, 2238907, 18039703.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
-
33
-
-
33846116032
-
New developments in the InterPro database
-
10.1093/nar/gkl841, 1899100, 17202162
-
Mulder NJ, Apweiler R, Attwood TK. New developments in the InterPro database. Nucleic Acids Res 2007, 35:D224-8. 10.1093/nar/gkl841, 1899100, 17202162.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
-
34
-
-
33750474439
-
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification
-
10.1186/gb-2006-7-9-r83, 1794543, 16973001
-
Krishnamurthy N, Brown DP, Kirshner D, Sjölander K. PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification. Genome Biol 2006, 7:R83. 10.1186/gb-2006-7-9-r83, 1794543, 16973001.
-
(2006)
Genome Biol
, vol.7
-
-
Krishnamurthy, N.1
Brown, D.P.2
Kirshner, D.3
Sjölander, K.4
-
35
-
-
0034003595
-
The ATP-cone: an evolutionarily mobile, ATPbinding regulatory domain
-
Aravind L, Wolf YI, Koonin EV. The ATP-cone: an evolutionarily mobile, ATPbinding regulatory domain. J Mol Microbiol Biotechnol 2000, 2:191-194.
-
(2000)
J Mol Microbiol Biotechnol
, vol.2
, pp. 191-194
-
-
Aravind, L.1
Wolf, Y.I.2
Koonin, E.V.3
-
36
-
-
0031897589
-
Predicting functions from protein sequences--where are the bottlenecks?
-
10.1038/ng0498-313, 9537411
-
Bork P, Koonin EV. Predicting functions from protein sequences--where are the bottlenecks?. Nat Genet 1998, 18:313-8. 10.1038/ng0498-313, 9537411.
-
(1998)
Nat Genet
, vol.18
, pp. 313-318
-
-
Bork, P.1
Koonin, E.V.2
-
37
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
-
38
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
10.1093/nar/gki866, 1251668, 16214803
-
Overbeek R, Begley T, Butler RM. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005, 33:5691-702. 10.1093/nar/gki866, 1251668, 16214803.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
-
39
-
-
52449114817
-
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
-
10.1371/journal.pone.0003042, 2518522, 18725995
-
Gilbert JA, Field D, Huang Y. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS ONE 2008, 3:e3042. 10.1371/journal.pone.0003042, 2518522, 18725995.
-
(2008)
PLoS ONE
, vol.3
-
-
Gilbert, J.A.1
Field, D.2
Huang, Y.3
|