-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0033034745
-
Automated genome sequence analysis and annotation
-
Andrade,M.A., Brown,N.P., Leroy,C., Hoersch,S., de Daruvar,A., Reich,C., Franchini,A., Tamames,J., Valencia,A., Ouzounis,C. and Sander,C. (1999) Automated genome sequence analysis and annotation. Bioinformatics, 15, 391-412.
-
(1999)
Bioinformatics
, vol.15
, pp. 391-412
-
-
Andrade, M.A.1
Brown, N.P.2
Leroy, C.3
Hoersch, S.4
de Daruvar, A.5
Reich, C.6
Franchini, A.7
Tamames, J.8
Valencia, A.9
Ouzounis, C.10
Sander, C.11
-
3
-
-
0031897589
-
Predicting functions from protein sequences-where are the bottlenecks?
-
Bork,P. and Koonin,E.V (1998) Predicting functions from protein sequences-where are the bottlenecks? Nature Genet., 18, 313-318.
-
(1998)
Nature Genet.
, vol.18
, pp. 313-318
-
-
Bork, P.1
Koonin E.V2
-
4
-
-
0032491377
-
Predicting function: From genes to genomes and back
-
Bork,P., Dandekar,T., Diaz-Lazcoz,Y., Eisenhaber,F., Huynen,M. and Yuan,Y. (1998) Predicting function: From genes to genomes and back. J. Mol. Biol., 283, 707-725.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 707-725
-
-
Bork, P.1
Dandekar, T.2
Diaz-Lazcoz, Y.3
Eisenhaber, F.4
Huynen, M.5
Yuan, Y.6
-
5
-
-
0033119399
-
Errors in genome annotation
-
Brenner,S.E. (1999) Errors in genome annotation. Trends Genet., 15,132-133.
-
(1999)
Trends Genet.
, vol.15
, pp. 132-133
-
-
Brenner, S.E.1
-
6
-
-
0035424599
-
Intrinsic errors in genome annotation
-
Devos,D. and Valencia,A. (2001) Intrinsic errors in genome annotation. Trends Genet., 17, 429-431.
-
(2001)
Trends Genet.
, vol.17
, pp. 429-431
-
-
Devos, D.1
Valencia, A.2
-
7
-
-
0034767547
-
Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
-
Hegyi,H. and Gerstein,M. (2001) Annotation transfer for genomics: measuring functional divergence in multi-domain proteins. Genome Res., 11, 1632-1640.
-
(2001)
Genome Res.
, vol.11
, pp. 1632-1640
-
-
Hegyi, H.1
Gerstein, M.2
-
8
-
-
0035117320
-
Genome sequences and great expectations
-
interactions0001.1-0001.3
-
Iliopoulos,I., Tsoka,S., Andrade,M.A., Janssen,P., Audit,B., Tramontano,A., Valencia,A., Leroy,C., Sander,C. and Ouzounis,C.A. (2000) Genome sequences and great expectations. Genome Biol., 2, interactions0001.1-0001.3.
-
(2000)
Genome Biol.
, vol.2
-
-
Iliopoulos, I.1
Tsoka, S.2
Andrade, M.A.3
Janssen, P.4
Audit, B.5
Tramontano, A.6
Valencia, A.7
Leroy, C.8
Sander, C.9
Ouzounis, C.A.10
-
9
-
-
0035753660
-
Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous analyses of protein sequences
-
research0051.1-0051.11
-
Iyer,L.M., Aravind,L., Bork,P., Hofmann,K., Mushegian,A.R., Zhulin,I.B. and Koonin,E.V. (2001) Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous analyses of protein sequences. Genome Biol., 2, research0051.1-0051.11.
-
(2001)
Genome Biol.
, vol.2
-
-
Iyer, L.M.1
Aravind, L.2
Bork, P.3
Hofmann, K.4
Mushegian, A.R.5
Zhulin, I.B.6
Koonin, E.V.7
-
10
-
-
0030628465
-
Prediction of enzyme classification from protein sequence without the use of sequence similarity
-
des Jardins,M., Karp,P.D., Krummenacker,M., Lee,T.J. and Ouzounis,C.A. (1997) Prediction of enzyme classification from protein sequence without the use of sequence similarity. Proc. Int. Conf. Intell. Syst. Mol. Biol., 5, 92-99.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 92-99
-
-
des Jardins, M.1
Karp, P.D.2
Krummenacker, M.3
Lee, T.J.4
Ouzounis, C.A.5
-
11
-
-
0031797096
-
What we do not know about sequence analysis and sequence databases
-
Karp,P.D. (1998) What we do not know about sequence analysis and sequence databases. Bioinformatics, 14, 753-754.
-
(1998)
Bioinformatics
, vol.14
, pp. 753-754
-
-
Karp, P.D.1
-
12
-
-
18144453832
-
Errors in genome reviews
-
Kyrpides,N.C. and Ouzounis,C.A. (1998) Errors in genome reviews. Science, 281, 1457-1457.
-
(1998)
Science
, vol.281
, pp. 1457
-
-
Kyrpides, N.C.1
Ouzounis, C.A.2
-
13
-
-
0033042327
-
Whole-genome sequence annotation: 'Going wrong with confidence'
-
Kyrpides,N.C. and Ouzounis,C.A. (1999) Whole-genome sequence annotation: 'Going wrong with confidence'. Mol. Microbiol., 32, 886-887.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 886-887
-
-
Kyrpides, N.C.1
Ouzounis, C.A.2
-
14
-
-
0034669517
-
Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools
-
Kyrpides,N.C., Ouzounis,C.A., Iliopoulos,I., Vonstein,V. and Overbeek,R. (2000) Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools. Nucleic Acids Res., 28, 4573-4576.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4573-4576
-
-
Kyrpides, N.C.1
Ouzounis, C.A.2
Iliopoulos, I.3
Vonstein, V.4
Overbeek, R.5
-
15
-
-
0032870398
-
'Going wrong with confidence': Misleading sequence analyses of CiaB ClpX
-
Pallen,M., Wren,B. and Parkhill,J. (1999) 'Going wrong with confidence': Misleading sequence analyses of CiaB and ClpX. Mol. Microbiol., 34, 195-195.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 195-195
-
-
Pallen, M.1
Wren, B.2
Parkhill, J.3
-
16
-
-
0030623641
-
Predicting enzyme function from sequence: A systematic appraisal
-
Shah,I. and Hunter,L. (1997) Predicting enzyme function from sequence: a systematic appraisal. Proc. Int. Conf. Intell. Syst. Mol. Biol., 5, 276-283.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 276-283
-
-
Shah, I.1
Hunter, L.2
-
17
-
-
0031279916
-
The challenges of genome sequence annotation or 'the devil is in the details'
-
Smith,T.F. and Zhang,X. (1997) The challenges of genome sequence annotation or 'the devil is in the details'. Nat. Biotechnol., 15, 1222-1223.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 1222-1223
-
-
Smith, T.F.1
Zhang, X.2
-
18
-
-
0034714556
-
Recent developments and future directions in computational genomics
-
Tsoka,S. and Ouzounis,C.A. (2000) Recent developments and future directions in computational genomics. FEBS Lett., 480, 42-48.
-
(2000)
FEBS Lett.
, vol.480
, pp. 42-48
-
-
Tsoka, S.1
Ouzounis, C.A.2
-
19
-
-
0034677669
-
Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
-
Wilson,C.A., Kreychman,J. and Gerstein,M. (2000) Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J. Mol. Biol., 297, 233-249.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 233-249
-
-
Wilson, C.A.1
Kreychman, J.2
Gerstein, M.3
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