메뉴 건너뛰기




Volumn 18, Issue 12, 2002, Pages 1641-1649

Modeling the percolation of annotation errors in a database of protein sequences

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANALYTICAL ERROR; ARTICLE; CONTROLLED STUDY; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; PROBABILITY; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN STRUCTURE; QUALITY CONTROL; RELIABILITY; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY;

EID: 12244283680     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.12.1641     Document Type: Article
Times cited : (137)

References (19)
  • 3
    • 0031897589 scopus 로고    scopus 로고
    • Predicting functions from protein sequences-where are the bottlenecks?
    • Bork,P. and Koonin,E.V (1998) Predicting functions from protein sequences-where are the bottlenecks? Nature Genet., 18, 313-318.
    • (1998) Nature Genet. , vol.18 , pp. 313-318
    • Bork, P.1    Koonin E.V2
  • 5
    • 0033119399 scopus 로고    scopus 로고
    • Errors in genome annotation
    • Brenner,S.E. (1999) Errors in genome annotation. Trends Genet., 15,132-133.
    • (1999) Trends Genet. , vol.15 , pp. 132-133
    • Brenner, S.E.1
  • 6
    • 0035424599 scopus 로고    scopus 로고
    • Intrinsic errors in genome annotation
    • Devos,D. and Valencia,A. (2001) Intrinsic errors in genome annotation. Trends Genet., 17, 429-431.
    • (2001) Trends Genet. , vol.17 , pp. 429-431
    • Devos, D.1    Valencia, A.2
  • 7
    • 0034767547 scopus 로고    scopus 로고
    • Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
    • Hegyi,H. and Gerstein,M. (2001) Annotation transfer for genomics: measuring functional divergence in multi-domain proteins. Genome Res., 11, 1632-1640.
    • (2001) Genome Res. , vol.11 , pp. 1632-1640
    • Hegyi, H.1    Gerstein, M.2
  • 9
    • 0035753660 scopus 로고    scopus 로고
    • Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous analyses of protein sequences
    • research0051.1-0051.11
    • Iyer,L.M., Aravind,L., Bork,P., Hofmann,K., Mushegian,A.R., Zhulin,I.B. and Koonin,E.V. (2001) Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous analyses of protein sequences. Genome Biol., 2, research0051.1-0051.11.
    • (2001) Genome Biol. , vol.2
    • Iyer, L.M.1    Aravind, L.2    Bork, P.3    Hofmann, K.4    Mushegian, A.R.5    Zhulin, I.B.6    Koonin, E.V.7
  • 11
    • 0031797096 scopus 로고    scopus 로고
    • What we do not know about sequence analysis and sequence databases
    • Karp,P.D. (1998) What we do not know about sequence analysis and sequence databases. Bioinformatics, 14, 753-754.
    • (1998) Bioinformatics , vol.14 , pp. 753-754
    • Karp, P.D.1
  • 12
    • 18144453832 scopus 로고    scopus 로고
    • Errors in genome reviews
    • Kyrpides,N.C. and Ouzounis,C.A. (1998) Errors in genome reviews. Science, 281, 1457-1457.
    • (1998) Science , vol.281 , pp. 1457
    • Kyrpides, N.C.1    Ouzounis, C.A.2
  • 13
    • 0033042327 scopus 로고    scopus 로고
    • Whole-genome sequence annotation: 'Going wrong with confidence'
    • Kyrpides,N.C. and Ouzounis,C.A. (1999) Whole-genome sequence annotation: 'Going wrong with confidence'. Mol. Microbiol., 32, 886-887.
    • (1999) Mol. Microbiol. , vol.32 , pp. 886-887
    • Kyrpides, N.C.1    Ouzounis, C.A.2
  • 14
    • 0034669517 scopus 로고    scopus 로고
    • Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools
    • Kyrpides,N.C., Ouzounis,C.A., Iliopoulos,I., Vonstein,V. and Overbeek,R. (2000) Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools. Nucleic Acids Res., 28, 4573-4576.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4573-4576
    • Kyrpides, N.C.1    Ouzounis, C.A.2    Iliopoulos, I.3    Vonstein, V.4    Overbeek, R.5
  • 15
    • 0032870398 scopus 로고    scopus 로고
    • 'Going wrong with confidence': Misleading sequence analyses of CiaB ClpX
    • Pallen,M., Wren,B. and Parkhill,J. (1999) 'Going wrong with confidence': Misleading sequence analyses of CiaB and ClpX. Mol. Microbiol., 34, 195-195.
    • (1999) Mol. Microbiol. , vol.34 , pp. 195-195
    • Pallen, M.1    Wren, B.2    Parkhill, J.3
  • 16
    • 0030623641 scopus 로고    scopus 로고
    • Predicting enzyme function from sequence: A systematic appraisal
    • Shah,I. and Hunter,L. (1997) Predicting enzyme function from sequence: a systematic appraisal. Proc. Int. Conf. Intell. Syst. Mol. Biol., 5, 276-283.
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.5 , pp. 276-283
    • Shah, I.1    Hunter, L.2
  • 17
    • 0031279916 scopus 로고    scopus 로고
    • The challenges of genome sequence annotation or 'the devil is in the details'
    • Smith,T.F. and Zhang,X. (1997) The challenges of genome sequence annotation or 'the devil is in the details'. Nat. Biotechnol., 15, 1222-1223.
    • (1997) Nat. Biotechnol. , vol.15 , pp. 1222-1223
    • Smith, T.F.1    Zhang, X.2
  • 18
    • 0034714556 scopus 로고    scopus 로고
    • Recent developments and future directions in computational genomics
    • Tsoka,S. and Ouzounis,C.A. (2000) Recent developments and future directions in computational genomics. FEBS Lett., 480, 42-48.
    • (2000) FEBS Lett. , vol.480 , pp. 42-48
    • Tsoka, S.1    Ouzounis, C.A.2
  • 19
    • 0034677669 scopus 로고    scopus 로고
    • Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
    • Wilson,C.A., Kreychman,J. and Gerstein,M. (2000) Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J. Mol. Biol., 297, 233-249.
    • (2000) J. Mol. Biol. , vol.297 , pp. 233-249
    • Wilson, C.A.1    Kreychman, J.2    Gerstein, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.