메뉴 건너뛰기




Volumn 27, Issue 1, 2010, Pages 153-160

Uncovering the footprint of positive selection on the X chromosome of drosophila melanogaster

Author keywords

Drosophila melanogaster; Nucleotide polymorphism; Positive selection

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA FOOTPRINTING; DNA POLYMORPHISM; DROSOPHILA MELANOGASTER; FOLLOW UP; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC SELECTION; GENETIC VARIABILITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; X CHROMOSOME;

EID: 72649096784     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp220     Document Type: Article
Times cited : (4)

References (39)
  • 1
    • 38849194141 scopus 로고    scopus 로고
    • Hitchhiking effects of recurrent beneficial amino acid substitution in the Drosophila melanogaster genome
    • Andolfatto P. 2007. Hitchhiking effects of recurrent beneficial amino acid substitution in the Drosophila melanogaster genome. Genome Res. 17:1755-1762.
    • (2007) Genome Res , vol.17 , pp. 1755-1762
    • Andolfatto, P.1
  • 2
    • 0003455528 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY)
    • Ashburner M. 1989. Drosophila: a laboratory handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY).
    • (1989) Drosophila: A Laboratory Handbook
    • Ashburner, M.1
  • 3
    • 31544435449 scopus 로고    scopus 로고
    • Multiple signatures of positive selection downstream of notch on the X chromosome in Drosophila melanogaster
    • Bauer DuMont V, Aquadro CF. 2005 Multiple signatures of positive selection downstream of notch on the X chromosome in Drosophila melanogaster. Genetics. 171, 639-653
    • (2005) Genetics , vol.171 , pp. 639-653
    • Bauer Dumont, V.1    Aquadro, C.F.2
  • 4
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • 13 co-authors
    • Begun DJ, Holloway AK, Stevens K, et al. (13 co-authors). 2007. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 5:2534-2559.
    • (2007) PLoS Biol , vol.5 , pp. 2534-2559
    • Begun, D.J.1    Holloway, A.K.2    Stevens, K.3
  • 5
    • 44449101058 scopus 로고    scopus 로고
    • Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila
    • Beisswanger S, Stephan W. 2008. Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. Proc Natl Acad Sci USA. 105:5447-5452.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 5447-5452
    • Beisswanger, S.1    Stephan, W.2
  • 6
    • 33644784801 scopus 로고    scopus 로고
    • Evidence for a selective sweep in the wapl region of Drosophila melanogaster
    • DOI 10.1534/genetics.105.049346
    • Beisswanger S, Stephan W, De Lorenzo D. 2006. Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics. 172:265-274. (Pubitemid 43345489)
    • (2006) Genetics , vol.172 , Issue.1 , pp. 265-274
    • Beisswanger, S.1    Stephan, W.2    De Lorenzo, D.3
  • 7
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hoechberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. 1:289-300.
    • (1995) J R Stat Soc ser B , vol.1 , pp. 289-300
    • Benjamini, Y.1    Hoechberg, Y.2
  • 8
    • 0347992013 scopus 로고    scopus 로고
    • Influence of two Wolbachia strains on population structure of East African Drosophila simulans
    • Dean MD, Ballard KJ, Glass A, Ballard JWO. 2003. Influence of two Wolbachia strains on population structure of East African Drosophila simulans. Genetics. 165:1959-1969
    • (2003) Genetics , vol.165 , pp. 1959-1969
    • Dean, M.D.1    Ballard, K.J.2    Glass, A.3    Ballard, J.W.O.4
  • 9
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Drosophila 12 Genomes Consortium
    • Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450:203-218.
    • (2007) Nature , vol.450 , pp. 203-218
  • 10
    • 33748772261 scopus 로고    scopus 로고
    • Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster
    • DOI 10.1093/molbev/msl069
    • Glinka S, De Lorenzo D, Stephan W. 2006. Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster. Mol Biol Evol. 23:1869-1878. (Pubitemid 44412873)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.10 , pp. 1869-1878
    • Glinka, S.1    De Lorenzo, D.2    Stephan, W.3
  • 11
    • 25844481290 scopus 로고    scopus 로고
    • Patterns of intron sequence evolution in Drosophila are independent upon length and GC content
    • Haddrill PR, Charlesworth B, Halligan D, Andolfatto P. 2005. Patterns of intron sequence evolution in Drosophila are independent upon length and GC content. Genome Biol. 6:R67.
    • (2005) Genome Biol , vol.6
    • Haddrill, P.R.1    Charlesworth, B.2    Halligan, D.3    Andolfatto, P.4
  • 12
    • 0036790812 scopus 로고    scopus 로고
    • Hitchhiking mapping: A population-based fine-mapping strategy for adaptive muta-tions in Drosophila melanogaster
    • Harr B, Kauer M, Schlötterer C. 2002. Hitchhiking mapping: a population-based fine-mapping strategy for adaptive muta-tions in Drosophila melanogaster. Proc Natl Acad Sci USA. 20:12949-12954.
    • (2002) Proc Natl Acad Sci USA , vol.20 , pp. 12949-12954
    • Harr, B.1    Kauer, M.2    Schlötterer, C.3
  • 13
    • 0036188913 scopus 로고    scopus 로고
    • Interactions between natural selection, recombination and gene density in the genes of Drosophila
    • Hey J, Kliman RM. 2002. Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics. 160:595-608.
    • (2002) Genetics , vol.160 , pp. 595-608
    • Hey, J.1    Kliman, R.M.2
  • 14
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics. 18:337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 15
    • 35548947931 scopus 로고    scopus 로고
    • Patterns of sequence variability and divergence at the diminutive gene region of Drosophila melanogaster: Complex patterns suggest an ancestral selective sweep
    • Jensen J, Bauer DuMont V, Ashmore AB, Gutierrez A, Aquadro CF. 2007. Patterns of sequence variability and divergence at the diminutive gene region of Drosophila melanogaster: complex patterns suggest an ancestral selective sweep. Genetics. 177:1071-1085.
    • (2007) Genetics , vol.177 , pp. 1071-1085
    • Jensen, J.1    Bauer Dumont, V.2    Ashmore, A.B.3    Gutierrez, A.4    Aquadro, C.F.5
  • 16
    • 23344438911 scopus 로고    scopus 로고
    • Distinguishing between selective sweeps and demography using DNA polymorphism data
    • Jensen JD, Kim Y, DuMont VB, Aquadro CF, Bustamante CD. 2005. Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics. 170:1401-1410.
    • (2005) Genetics , vol.170 , pp. 1401-1410
    • Jensen, J.D.1    Kim, Y.2    Dumont, V.B.3    Aquadro, C.F.4    Bustamante, C.D.5
  • 17
    • 52949128377 scopus 로고    scopus 로고
    • An approximate Bayesian estimator suggests strong, recurrent selective sweeps in Drosophila
    • Jensen JD, Thornton KR, Andolfatto P. 2008. An approximate Bayesian estimator suggests strong, recurrent selective sweeps in Drosophila. PLoS Genet. 4:1-11.
    • (2008) PLoS Genet , vol.4 , pp. 1-11
    • Jensen, J.D.1    Thornton, K.R.2    Andolfatto, P.3
  • 18
    • 38949155535 scopus 로고    scopus 로고
    • Inferring selection in partially sequenced regions
    • Jensen JD, Thornton KR, Aquadro CF. 2008. Inferring selection in partially sequenced regions. Mol Biol Evol. 25:438-446.
    • (2008) Mol Biol Evol , vol.25 , pp. 438-446
    • Jensen, J.D.1    Thornton, K.R.2    Aquadro, C.F.3
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN, editor Academic Press, New York
    • Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. Academic Press, New York. p. 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 21
    • 0036189827 scopus 로고    scopus 로고
    • Detecting the local signature of genetic hitchhiking along a recombining chromosome
    • Kim Y, Stephan W. 2002. Detecting the local signature of genetic hitchhiking along a recombining chromosome. Genetics. 160:765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 22
    • 33750491918 scopus 로고    scopus 로고
    • Inferring the demographic history and rate of adaptive substitution in Drosophila
    • Li H, Stephan W. 2006. Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet. 2:1580-1589.
    • (2006) PLoS Genet , vol.2 , pp. 1580-1589
    • Li, H.1    Stephan, W.2
  • 24
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith J, Haigh J. 1974. The hitch-hiking effect of a favourable gene. Genet Res. 23:23-35.
    • (1974) Genet Res , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 27
    • 4644285473 scopus 로고    scopus 로고
    • Detecting the footprint of positive selection in a European population of Drosophila melanogaster: Multilocus pattern of variation and distance to coding regions
    • Orengo DJ, Aguadé M. 2004. Detecting the footprint of positive selection in a European population of Drosophila melanogaster: multilocus pattern of variation and distance to coding regions. Genetics. 167:1759-1766.
    • (2004) Genetics , vol.167 , pp. 1759-1766
    • Orengo, D.J.1    Aguadé, M.2
  • 28
    • 34548297774 scopus 로고    scopus 로고
    • Genome scans of variation and adaptive change: Extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster
    • Orengo DJ, Aguadé M. 2007. Genome scans of variation and adaptive change: extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster. Mol Biol Evol. 24:1122-1129.
    • (2007) Mol Biol Evol , vol.24 , pp. 1122-1129
    • Orengo, D.J.1    Aguadé, M.2
  • 29
    • 49249123917 scopus 로고    scopus 로고
    • A population genomic approach to map recent positive selection in model species
    • Pavlidis P, Hutter S, Stephan W. 2008. A population genomic approach to map recent positive selection in model species. Mol Ecol. 17:3585-3598.
    • (2008) Mol Ecol , vol.17 , pp. 3585-3598
    • Pavlidis, P.1    Hutter, S.2    Stephan, W.3
  • 30
    • 33644784825 scopus 로고    scopus 로고
    • A scan of molecular variation leads to the narrow localization of a selective sweep affecting both afrotropical and cosmopolitan populations of Drosophila melanogaster
    • Pool JE, Bauer DuMont V, Mueller JL, Aquadro CF. 2006. A scan of molecular variation leads to the narrow localization of a selective sweep affecting both afrotropical and cosmopolitan populations of Drosophila melanogaster. Genetics. 172:1093-1105.
    • (2006) Genetics , vol.172 , pp. 1093-1105
    • Pool, J.E.1    Bauer Dumont, V.2    Mueller, J.L.3    Aquadro, C.F.4
  • 31
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR. 1989. Analyzing tables of statistical tests. Evolution. 44:223-225.
    • (1989) Evolution , vol.44 , pp. 223-225
    • Rice, W.R.1
  • 32
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analysis by the coalescent and other methods
    • Rozas J, Sánchez-DelBarrio JC, Meseguer X, Rozas R. 2003. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics. 19:2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-Delbarrio, J.C.2    Meseguer, X.3    Rozas, R.4
  • 33
    • 0036999964 scopus 로고    scopus 로고
    • Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
    • Schaeffer SW. 2002. Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura. Genet Res. 80:163-175.
    • (2002) Genet Res , vol.80 , pp. 163-175
    • Schaeffer, S.W.1
  • 34
    • 17444402038 scopus 로고    scopus 로고
    • A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from the standard neutral model of DNA sequence polymorphism
    • Schmid KJ, Ramos-Onsins S, Ringys-Beckstein H, Weisshaar B, Mitchell-Olds T. 2005. A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from the standard neutral model of DNA sequence polymorphism. Genetics. 169:1601-1615.
    • (2005) Genetics , vol.169 , pp. 1601-1615
    • Schmid, K.J.1    Ramos-Onsins, S.2    Ringys-Beckstein, H.3    Weisshaar, B.4    Mitchell-Olds, T.5
  • 35
    • 7344226732 scopus 로고
    • The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory
    • Stephan W, Wiehe T, Lenz MW. 1992. The effect of strongly selected substitutions on neutral polymorphism: analytical results based on diffusion theory. Theor Popul Biol. 41:237-254.
    • (1992) Theor Popul Biol , vol.41 , pp. 237-254
    • Stephan, W.1    Wiehe, T.2    Lenz, M.W.3
  • 36
    • 67649324657 scopus 로고    scopus 로고
    • Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis
    • Svetec N, Pavlidis P, Stephan W. 2009. Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. Mol Biol Evol. 26:1549-1556.
    • (2009) Mol Biol Evol , vol.26 , pp. 1549-1556
    • Svetec, N.1    Pavlidis, P.2    Stephan, W.3
  • 37
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 38
    • 34247891656 scopus 로고    scopus 로고
    • Controlling the false positive rate in multilocus genome scans for selection
    • Thornton KR, Jensen JD. 2007. Controlling the false positive rate in multilocus genome scans for selection. Genetics. 175: 737-750.
    • (2007) Genetics , vol.175 , pp. 737-750
    • Thornton, K.R.1    Jensen, J.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.