메뉴 건너뛰기




Volumn 167, Issue 4, 2004, Pages 1759-1766

Detecting the footprint of positive selection in a European population of Drosophila melanogaster: Multilocus pattern of variation and distance to coding regions

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ARTICLE; DNA FOOTPRINTING; DNA SEQUENCE; DROSOPHILA MELANOGASTER; EXPECTATION; GENETIC DISTANCE; GENETIC HETEROGENEITY; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC VARIABILITY; HABITAT QUALITY; MULTILOCUS ENZYME ELECTROPHORESIS; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION SIZE; PRIORITY JOURNAL; STATISTICS; X CHROMOSOME;

EID: 4644285473     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.028969     Document Type: Article
Times cited : (56)

References (31)
  • 1
    • 0035107550 scopus 로고    scopus 로고
    • Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
    • ANDOLFATTO, P., 2001 Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 279-290
    • Andolfatto, P.1
  • 2
    • 0033828706 scopus 로고    scopus 로고
    • A genome-wide departure from the standard neutral model in natural populations of Drosophila
    • ANDOLFATTO, P., and M. PRZEWORSKI, 2000 A genome-wide departure from the standard neutral model in natural populations of Drosophila. Genetics 156: 257-268.
    • (2000) Genetics , vol.156 , pp. 257-268
    • Andolfatto, P.1    Przeworski, M.2
  • 3
    • 0003455528 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • ASHBURNER, M., 1989 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1989) Drosophila: A Laboratory Handbook
    • Ashburner, M.1
  • 4
    • 0027374393 scopus 로고
    • African and North American populations of Drosophila melanogaster are very different at the DNA level
    • BEGUN, D. J., and C. F. AQUADRO, 1993 African and North American populations of Drosophila melanogaster are very different at the DNA level. Nature 365: 548-550.
    • (1993) Nature , vol.365 , pp. 548-550
    • Begun, D.J.1    Aquadro, C.F.2
  • 5
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • BRAVERMAN, J. M., R. R. HUDSON, N. L. KAPLAN and C. H. LANGLEY, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4
  • 6
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 7
    • 0028863202 scopus 로고
    • The pattern of neutral molecular variation under the background selection model
    • CHARLESWORTH, D., B. CHARLESWORTH and M. T. MORGAN, 1995 The pattern of neutral molecular variation under the background selection model. Genetics 141: 1619-1632.
    • (1995) Genetics , vol.141 , pp. 1619-1632
    • Charlesworth, D.1    Charlesworth, B.2    Morgan, M.T.3
  • 8
    • 0023998356 scopus 로고
    • Genetic variation of Drosophila melanogaster natural populations
    • DAVID, J., and P. CAPY, 1988 Genetic variation of Drosophila melanogaster natural populations. Trends Genet. 4: 106-111.
    • (1988) Trends Genet. , vol.4 , pp. 106-111
    • David, J.1    Capy, P.2
  • 9
    • 0032970601 scopus 로고    scopus 로고
    • A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation
    • FAY, J. C., and C.-I Wu, 1999 A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Mol. Biol. Evol. 16 (7): 1003-1005.
    • (1999) Mol. Biol. Evol. , vol.16 , Issue.7 , pp. 1003-1005
    • Fay, J.C.1    Wu, C.-I.2
  • 10
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality against population growth, hitchhiking and background selection
    • Fu, Y.-X., 1997 Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147: 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 12
    • 0347065347 scopus 로고    scopus 로고
    • Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach
    • GLINKA, S., L. OMETTO, S. MOUSSET, W. STEPHAN and D. DE LORENZO, 2003 Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics 165: 1269-1278.
    • (2003) Genetics , vol.165 , pp. 1269-1278
    • Glinka, S.1    Ometto, L.2    Mousset, S.3    Stephan, W.4    De Lorenzo, D.5
  • 13
    • 0035989428 scopus 로고    scopus 로고
    • Muller's ratchet and the pattern of variation at a neutral locus
    • GORDO, I., A. NAVARRO and B. CHARLESWORTH, 2002 Muller's ratchet and the pattern of variation at a neutral locus. Genetics 161: 835-848.
    • (2002) Genetics , vol.161 , pp. 835-848
    • Gordo, I.1    Navarro, A.2    Charlesworth, B.3
  • 14
    • 0036188913 scopus 로고    scopus 로고
    • Interactions between natural selection, recombination and gene density in the genes of Drosophila
    • HEY, J., and R. M. KLIMAN, 2002 Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics 160: 595-608.
    • (2002) Genetics , vol.160 , pp. 595-608
    • Hey, J.1    Kliman, R.M.2
  • 15
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 16
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • HUDSON, R. R., M. KREITMAN and M. AGUADÉ, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 17
    • 0024372736 scopus 로고
    • The "hitchhiking effectquot; revisited
    • KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The "hitchhiking effectquot; revisited. Genetics 123: 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 18
    • 0036189827 scopus 로고    scopus 로고
    • Detecting the local signature of genetic hitchhiking along a recombining chromosome
    • KIM, Y., and W. STEPHAN, 2002 Detecting the local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 19
    • 0020560127 scopus 로고
    • Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
    • KREITMAN, M., 1983 Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304: 412-417.
    • (1983) Nature , vol.304 , pp. 412-417
    • Kreitman, M.1
  • 20
    • 0000792280 scopus 로고
    • Historical biogeography of the Drosophila melanogaster species subgroup
    • LACHAISE, D., M.-L. CARIOU, J. R. DAVID, F. LEMEUNIER, L. TSACAS et al., 1988 Historical biogeography of the Drosophila melanogaster species subgroup. Evol. Biol. 22: 159-255.
    • (1988) Evol. Biol. , vol.22 , pp. 159-255
    • Lachaise, D.1    Cariou, M.-L.2    David, J.R.3    Lemeunier, F.4    Tsacas, L.5
  • 22
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • MAYNARD SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 23
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • MORIYAMA, E. N., and J. R. POWELL, 1996 Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 24
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • PRZEWORSKI, M., 2002 The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • Przeworski, M.1
  • 25
    • 0035107520 scopus 로고    scopus 로고
    • Recombination and the frequency spectrum in Drosophila melanogaster and Drosophila simulans
    • PRZEWORSKI, M., J. D. WALL and P. ANDOLFATTO, 2001 Recombination and the frequency spectrum in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 291-298.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 291-298
    • Przeworski, M.1    Wall, J.D.2    Andolfatto, P.3
  • 26
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • ROZAS, J., J. C. SÁNCHEZ-DELBARRIO, X. MESEGUER and R. ROZAS, 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.C.2    Meseguer, X.3    Rozas, R.4
  • 27
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • SIMONSEN, K. L., G. A. CHURCHILL and C. F. AQUADRO, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 29
    • 0033939003 scopus 로고    scopus 로고
    • Molecular evolution in a multisite nearly neutral mutation model
    • TACHIDA, H., 2000 Molecular evolution in a multisite nearly neutral mutation model. J. Mol. Evol. 50: 69-81.
    • (2000) J. Mol. Evol. , vol.50 , pp. 69-81
    • Tachida, H.1
  • 30
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN and D. G. HIGGINGS, 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgings, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.