-
1
-
-
0000893555
-
Vibrionaceae
-
In N.R. Krieg, and J.G. Holt (ed.), Williams and Wilkins, Baltimore, USA
-
Baumann, P., and R.H.W. Schubert. 1984. Vibrionaceae, p. 516-550. In N.R. Krieg, and J.G. Holt (ed.), Bergey's Manual of Systematic Bacteriology, vol. 1. Williams and Wilkins, Baltimore, USA.
-
(1984)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 516-550
-
-
Baumann, P.1
Schubert, R.H.W.2
-
2
-
-
0019126133
-
Reevaluation of the taxonomy of Vibrio, Beneckea, and Photo- bacterium: Abolition of the genus Beneckea
-
Baumann, P., L. Baumann, S.S. Bang, and M.J. Woolkalis. 1980. Reevaluation of the taxonomy of Vibrio, Beneckea, and Photo- bacterium: Abolition of the genus Beneckea. Curr. Microbiol. 4: 127-132.
-
(1980)
Curr. Microbiol
, vol.4
, pp. 127-132
-
-
Baumann, P.1
Baumann, L.2
Bang, S.S.3
Woolkalis, M.J.4
-
3
-
-
0035527404
-
Bacterial species and speciation
-
Cohan, F.M. 2001. Bacterial species and speciation. Syst. Biol. 50:513-524.
-
(2001)
Syst. Biol
, vol.50
, pp. 513-524
-
-
Cohan, F.M.1
-
4
-
-
33845890829
-
Genomics and the bacterial species problem
-
Doolittle, W.F., and R.T. Papke. 2006. Genomics and the bacterial species problem. Genome Biol. 7:116.
-
(2006)
Genome Biol
, vol.7
, pp. 116
-
-
Doolittle, W.F.1
Papke, R.T.2
-
5
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J.S., M. Kallersjo, A.G. Kluge, and C. Bult. 1995. Testing significance of incongruence. Cladistics 10:315-319.
-
(1995)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
6
-
-
0037671502
-
Vibrio lentus associated with diseased wild octopus (Octopus vulgaris)
-
Farto, R., S.P. Armada, M. Montes, J.A. Guisande, M.J. Pérez, and T.P. Nieto. 2003. Vibrio lentus associated with diseased wild octopus (Octopus vulgaris). J. Invertebr. Pathol. 83:149-156.
-
(2003)
J. Invertebr. Pathol
, vol.83
, pp. 149-156
-
-
Farto, R.1
Armada, S.P.2
Montes, M.3
Guisande, J.A.4
Pérez, M.J.5
Nieto, T.P.6
-
7
-
-
0003437299
-
-
Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
-
Felsenstein, J. 1993. PHYLIP-phylogenetic inference package, version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
-
(1993)
Phylip-phylogenetic Inference Package, Version 3.5c
-
-
Felsenstein, J.1
-
8
-
-
84959747425
-
Toward defining the course of evolution: Mini- mum change for a specific tree topology
-
Fitch, W.M. 1971. Toward defining the course of evolution: Mini- mum change for a specific tree topology. Syst. Zool. 20:406-416.
-
(1971)
Syst. Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
9
-
-
0033382676
-
Pathogenicity of Vibrio splendidus strains associated with turbot larvae, Scopthalmus maximus
-
Gatesoupe, F.J., C. Lambert, and J.L. Nicolas. 1999. Pathogenicity of Vibrio splendidus strains associated with turbot larvae, Scopthalmus maximus. J. Appl. Microbiol. 87:757-763.
-
(1999)
J. Appl. Microbiol
, vol.87
, pp. 757-763
-
-
Gatesoupe, F.J.1
Lambert, C.2
Nicolas, J.L.3
-
10
-
-
30744470609
-
Application of phylogenetic net- works in evolutionary studies
-
Huson, D.H., and D. Bryant. 2006. Application of phylogenetic net- works in evolutionary studies. Mol. Biol. Evol. 23:254-267.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
11
-
-
11844292055
-
Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains
-
Hyma, K.E., D.W. Lacher, A.M. Nelson, A.C. Bumbaugh, J.M. Janda, N.A. Strocjbine, V.B. Young, and T.S. Whittam. 2005. Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains. J. Bacteriol. 187:619-628.
-
(2005)
J. Bacteriol
, vol.187
, pp. 619-628
-
-
Hyma, K.E.1
Lacher, D.W.2
Nelson, A.M.3
Bumbaugh, A.C.4
Janda, J.M.5
Strocjbine, N.A.6
Young, V.B.7
Whittam, T.S.8
-
12
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5:150-163.
-
(2004)
Brief. Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
13
-
-
0035850432
-
A Vibrio splendidus strain is associated with summer mortality of juvenile oyster Crassostrea gigas in the Bay of Morlaix (North Brittany, France)
-
Lacoste, A., F. Jalabert, S. Malham, A. Cueff, F. Gélébart, C. Cordevant, M. Lange, and S.A. Poulet. 2001. A Vibrio splendidus strain is associated with summer mortality of juvenile oyster Crassostrea gigas in the Bay of Morlaix (North Brittany, France). Dis. Aquat. Org. 46:139-145.
-
(2001)
Dis. Aquat. Org
, vol.46
, pp. 139-145
-
-
Lacoste, A.1
Jalabert, F.2
Malham, S.3
Cueff, A.4
Gélébart, F.5
Cordevant, C.6
Lange, M.7
Poulet, S.A.8
-
14
-
-
0038373570
-
Seasonal dynamics in a coastal Vibrio community examined by a rapid cluster- ing method based on 16S rDNA
-
Maeda, T., Y. Matsuo, M. Furushita, and T. Shiba. 2003. Seasonal dynamics in a coastal Vibrio community examined by a rapid cluster- ing method based on 16S rDNA. Fish. Sci. 69:385-394.
-
(2003)
Fish. Sci
, vol.69
, pp. 385-394
-
-
Maeda, T.1
Matsuo, Y.2
Furushita, M.3
Shiba, T.4
-
15
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin, D.P., C. Williamson, and D. Posada. 2005. RDP2: Recombination detection and analysis from sequence alignments. Bioinformat- ics 21:260-262.
-
(2005)
Bioinformat- Ics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
16
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Maynard Smith, J. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
-
(1992)
J. Mol. Evol
, vol.34
, pp. 126-129
-
-
Maynard Smith, J.1
-
17
-
-
0027287389
-
How clonal are bacteria?
-
Maynard Smith, J., N.H. Smith, M. O'Rourke, and B.G. Spratt. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. USA. 90:4384-4388.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4384-4388
-
-
Maynard Smith, J.1
Smith, N.H.2
O'Rourke, M.3
Spratt, B.G.4
-
18
-
-
33644749286
-
Recombination in Thermotoga: Implications for species concepts and biogeography
-
Nesbo, C.L., M. Dlutek, and W.F. Doolittle. 2006. Recombination in Thermotoga: Implications for species concepts and biogeography. Genetics 172:759-769.
-
(2006)
Genetics
, vol.172
, pp. 759-769
-
-
Nesbo, C.L.1
Dlutek, M.2
Doolittle, W.F.3
-
19
-
-
33745930490
-
Population structure of Francisella tularensis
-
Nubel, U., R. Reissbrodt, A. Weller, et al. 2006. Population structure of Francisella tularensis. J. Bacteriol. 188:5319-5324.
-
(2006)
J. Bacteriol
, vol.188
, pp. 5319-5324
-
-
Nubel, U.1
Reissbrodt, R.2
Weller, A.3
-
20
-
-
33645539749
-
Frequent recombination and low level of clonality within Salmonella enterica subspecies I
-
Octavia, S., and R. Lan. 2006. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 152:1099-1108.
-
(2006)
Microbiology
, vol.152
, pp. 1099-1108
-
-
Octavia, S.1
Lan, R.2
-
21
-
-
10344243528
-
Frequent recombination in a saltern population of Halorubrum
-
Papke, R.T., J.E. Koenig, F. Rodriguez-Valera, and W.F. Doolittle. 2004. Frequent recombination in a saltern population of Halorubrum. Science 306:1928-1929.
-
(2004)
Science
, vol.306
, pp. 1928-1929
-
-
Papke, R.T.1
Koenig, J.E.2
Rodriguez-Valera, F.3
Doolittle, W.F.4
-
22
-
-
0017141052
-
Study of genetic relationships among marine species of the genera Beneckea and Photobactrium by means of in vitro DNA/DNA hybridization
-
Reichelt, J.L., P. Baumann, and L. Baumann. 1976. Study of genetic relationships among marine species of the genera Beneckea and Photobactrium by means of in vitro DNA/DNA hybridization. Arch. Microbiol. 110:101-120.
-
(1976)
Arch. Microbiol
, vol.110
, pp. 101-120
-
-
Reichelt, J.L.1
Baumann, P.2
Baumann, L.3
-
23
-
-
0034612502
-
Parallel evolution of virulence in pathogenic Escherichia coli
-
Reid, S.D., C.J. Herbelin, A.C. Bumbaugh, R.K. Selander, and T.S. Whitam. 2000. Parallel evolution of virulence in pathogenic Escherichia coli. Nature 406:64-67.
-
(2000)
Nature
, vol.406
, pp. 64-67
-
-
Reid, S.D.1
Herbelin, C.J.2
Bumbaugh, A.C.3
Selander, R.K.4
Whitam, T.S.5
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406- 425.
-
(1987)
Mol. Biol. Evol. 4:406-
, pp. 425
-
-
Saitou, N.1
Nei, M.2
-
25
-
-
35648960851
-
Inferring the evolutionary history of vibrios by means of multilocus sequence analysis
-
Sawabe, T., K. Kita-Tsukamoto, and F.L. Thompson. 2007. Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J. Bacteriol. 189:7932-7936.
-
(2007)
J. Bacteriol
, vol.189
, pp. 7932-7936
-
-
Sawabe, T.1
Kita-Tsukamoto, K.2
Thompson, F.L.3
-
27
-
-
69249240273
-
Planktonic bacterial population dynamics with environmental changes in coastal areas of Suruga Bay
-
Takayuki, T., T. Tashiro, A. Ozaki, H. Takakubo, Y. Yamamoto, T. Maruyama, K. Nagaosa, H. Kimura, and K. Kato. 2007. Planktonic bacterial population dynamics with environmental changes in coastal areas of Suruga Bay. Microbes Environ. 22:257-267.
-
(2007)
Microbes Environ
, vol.22
, pp. 257-267
-
-
Takayuki, T.1
Tashiro, T.2
Ozaki, A.3
Takakubo, H.4
Yamamoto, Y.5
Maruyama, T.6
Nagaosa, K.7
Kimura, H.8
Kato, K.9
-
28
-
-
0031574072
-
The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
30
-
-
3242798356
-
Diversity and dynamics of a North Atlantic coastal Vibrio community
-
Thompson, J.R., M.A. Randa, L.A. Marcelino, A. Tomita-Mitchell, E. Lim, and M.F. Polz. 2004. Diversity and dynamics of a North Atlantic coastal Vibrio community. Appl. Environ. Microbiol. 70:4103-4110.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 4103-4110
-
-
Thompson, J.R.1
Randa, M.A.2
Marcelino, L.A.3
Tomita-Mitchell, A.4
Lim, E.5
Polz, M.F.6
-
31
-
-
25144436280
-
Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
-
Thompson, F.L., D. Gevers, C.C. Thompson, P. Dawyndt, S. Naser, B. Hoste, C.B. Munn, and J. Swings. 2005. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol. 71:5107-5115.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5107-5115
-
-
Thompson, F.L.1
Gevers, D.2
Thompson, C.C.3
Dawyndt, P.4
Naser, S.5
Hoste, B.6
Munn, C.B.7
Swings, J.8
-
32
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
Thompson, J.R., S. Pacocha, C. Pharino, V. Klepac-Ceraj, D.E. Hunt, J. Benoit, R. Sarma-Rupavtarm, D.L. Distel, and M.F. Polz. 2005. Genotypic diversity within a natural coastal bacterioplankton population. Science 307:1311-1313.
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
Hunt, D.E.5
Benoit, J.6
Sarma-Rupavtarm, R.7
Distel, D.L.8
Polz, M.F.9
-
33
-
-
84962058879
-
Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymor- phism (AFLP) and multilocus sequence analysis (MLSA)
-
Thompson, F.L., I. Cleenwerck, J. Swings, J. Matsuyama, and T. Iida. 2007. Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymor- phism (AFLP) and multilocus sequence analysis (MLSA). Microbes Environ. 22:373-379.
-
(2007)
Microbes Environ
, vol.22
, pp. 373-379
-
-
Thompson, F.L.1
Cleenwerck, I.2
Swings, J.3
Matsuyama, J.4
Iida, T.5
-
34
-
-
0032979597
-
Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the north-western Pacific Ocean and Otsuchi Bay
-
Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the north-western Pacific Ocean and Otsuchi Bay, Japan. Can. J. Microbiol. 45:67-76.
-
(1999)
Japan. Can. J. Microbiol
, vol.45
, pp. 67-76
-
-
Urakawa, H.1
Kita-Tsukamoto, K.2
Ohwada, K.3
-
35
-
-
0033306368
-
16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water
-
Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. 16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water. Can. J. Microbiol. 45:1001-1007.
-
(1999)
Can. J. Microbiol
, vol.45
, pp. 1001-1007
-
-
Urakawa, H.1
Kita-Tsukamoto, K.2
Ohwada, K.3
-
36
-
-
0141817852
-
Multi-locus sequence typing: A tool for global epidemiology
-
Urwin, R., and M.C.J. Maiden. 2003. Multi-locus sequence typing: A tool for global epidemiology. Trends Microbiol. 11:479-487.
-
(2003)
Trends Microbiol
, vol.11
, pp. 479-487
-
-
Urwin, R.1
Maiden, M.C.J.2
-
37
-
-
58549084151
-
A comparison of homologous recombination rates in bacteria and archaea
-
Vos, M., and X. Didelot. 2009. A comparison of homologous recombination rates in bacteria and archaea. ISME J. 3:199-208.
-
(2009)
Isme J
, vol.3
, pp. 199-208
-
-
Vos, M.1
Didelot, X.2
-
38
-
-
33747160474
-
Population genomics in natural microbial communities. Trends Ecol
-
Whitaker, R.J., and J.F. Banfield. 2006. Population genomics in natural microbial communities. Trends Ecol. Evol. 21:508-516.
-
(2006)
Evol
, vol.21
, pp. 508-516
-
-
Whitaker, R.J.1
Banfield, J.F.2
-
39
-
-
0000782587
-
A list of marine bacteria including descriptions of sixty new species
-
ZoBell, C.E., and H.C. Upham. 1944. A list of marine bacteria including descriptions of sixty new species. Bull. Scripps Inst. Ocean. 5:239-289.
-
(1944)
Bull. Scripps Inst. Ocean
, vol.5
, pp. 239-289
-
-
Zobell, C.E.1
Upham, H.C.2
|