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Volumn 24, Issue 4, 2009, Pages 281-285

Mutation is the main driving force in the diversification of the Vibrio splendidus clade

Author keywords

Diversification; Multilocus sequence analysis; Population biology; Vibrio splendidus; Vibrios

Indexed keywords

VIBRIO; VIBRIO SPLENDIDUS; VIBRIONALES;

EID: 72549117244     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME09128     Document Type: Article
Times cited : (11)

References (39)
  • 1
    • 0000893555 scopus 로고
    • Vibrionaceae
    • In N.R. Krieg, and J.G. Holt (ed.), Williams and Wilkins, Baltimore, USA
    • Baumann, P., and R.H.W. Schubert. 1984. Vibrionaceae, p. 516-550. In N.R. Krieg, and J.G. Holt (ed.), Bergey's Manual of Systematic Bacteriology, vol. 1. Williams and Wilkins, Baltimore, USA.
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 516-550
    • Baumann, P.1    Schubert, R.H.W.2
  • 2
    • 0019126133 scopus 로고
    • Reevaluation of the taxonomy of Vibrio, Beneckea, and Photo- bacterium: Abolition of the genus Beneckea
    • Baumann, P., L. Baumann, S.S. Bang, and M.J. Woolkalis. 1980. Reevaluation of the taxonomy of Vibrio, Beneckea, and Photo- bacterium: Abolition of the genus Beneckea. Curr. Microbiol. 4: 127-132.
    • (1980) Curr. Microbiol , vol.4 , pp. 127-132
    • Baumann, P.1    Baumann, L.2    Bang, S.S.3    Woolkalis, M.J.4
  • 3
    • 0035527404 scopus 로고    scopus 로고
    • Bacterial species and speciation
    • Cohan, F.M. 2001. Bacterial species and speciation. Syst. Biol. 50:513-524.
    • (2001) Syst. Biol , vol.50 , pp. 513-524
    • Cohan, F.M.1
  • 4
    • 33845890829 scopus 로고    scopus 로고
    • Genomics and the bacterial species problem
    • Doolittle, W.F., and R.T. Papke. 2006. Genomics and the bacterial species problem. Genome Biol. 7:116.
    • (2006) Genome Biol , vol.7 , pp. 116
    • Doolittle, W.F.1    Papke, R.T.2
  • 7
    • 0003437299 scopus 로고
    • Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. 1993. PHYLIP-phylogenetic inference package, version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (1993) Phylip-phylogenetic Inference Package, Version 3.5c
    • Felsenstein, J.1
  • 8
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Mini- mum change for a specific tree topology
    • Fitch, W.M. 1971. Toward defining the course of evolution: Mini- mum change for a specific tree topology. Syst. Zool. 20:406-416.
    • (1971) Syst. Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 9
    • 0033382676 scopus 로고    scopus 로고
    • Pathogenicity of Vibrio splendidus strains associated with turbot larvae, Scopthalmus maximus
    • Gatesoupe, F.J., C. Lambert, and J.L. Nicolas. 1999. Pathogenicity of Vibrio splendidus strains associated with turbot larvae, Scopthalmus maximus. J. Appl. Microbiol. 87:757-763.
    • (1999) J. Appl. Microbiol , vol.87 , pp. 757-763
    • Gatesoupe, F.J.1    Lambert, C.2    Nicolas, J.L.3
  • 10
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic net- works in evolutionary studies
    • Huson, D.H., and D. Bryant. 2006. Application of phylogenetic net- works in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 12
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5:150-163.
    • (2004) Brief. Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 13
    • 0035850432 scopus 로고    scopus 로고
    • A Vibrio splendidus strain is associated with summer mortality of juvenile oyster Crassostrea gigas in the Bay of Morlaix (North Brittany, France)
    • Lacoste, A., F. Jalabert, S. Malham, A. Cueff, F. Gélébart, C. Cordevant, M. Lange, and S.A. Poulet. 2001. A Vibrio splendidus strain is associated with summer mortality of juvenile oyster Crassostrea gigas in the Bay of Morlaix (North Brittany, France). Dis. Aquat. Org. 46:139-145.
    • (2001) Dis. Aquat. Org , vol.46 , pp. 139-145
    • Lacoste, A.1    Jalabert, F.2    Malham, S.3    Cueff, A.4    Gélébart, F.5    Cordevant, C.6    Lange, M.7    Poulet, S.A.8
  • 14
    • 0038373570 scopus 로고    scopus 로고
    • Seasonal dynamics in a coastal Vibrio community examined by a rapid cluster- ing method based on 16S rDNA
    • Maeda, T., Y. Matsuo, M. Furushita, and T. Shiba. 2003. Seasonal dynamics in a coastal Vibrio community examined by a rapid cluster- ing method based on 16S rDNA. Fish. Sci. 69:385-394.
    • (2003) Fish. Sci , vol.69 , pp. 385-394
    • Maeda, T.1    Matsuo, Y.2    Furushita, M.3    Shiba, T.4
  • 15
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • Martin, D.P., C. Williamson, and D. Posada. 2005. RDP2: Recombination detection and analysis from sequence alignments. Bioinformat- ics 21:260-262.
    • (2005) Bioinformat- Ics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 16
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith, J. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 18
    • 33644749286 scopus 로고    scopus 로고
    • Recombination in Thermotoga: Implications for species concepts and biogeography
    • Nesbo, C.L., M. Dlutek, and W.F. Doolittle. 2006. Recombination in Thermotoga: Implications for species concepts and biogeography. Genetics 172:759-769.
    • (2006) Genetics , vol.172 , pp. 759-769
    • Nesbo, C.L.1    Dlutek, M.2    Doolittle, W.F.3
  • 19
    • 33745930490 scopus 로고    scopus 로고
    • Population structure of Francisella tularensis
    • Nubel, U., R. Reissbrodt, A. Weller, et al. 2006. Population structure of Francisella tularensis. J. Bacteriol. 188:5319-5324.
    • (2006) J. Bacteriol , vol.188 , pp. 5319-5324
    • Nubel, U.1    Reissbrodt, R.2    Weller, A.3
  • 20
    • 33645539749 scopus 로고    scopus 로고
    • Frequent recombination and low level of clonality within Salmonella enterica subspecies I
    • Octavia, S., and R. Lan. 2006. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 152:1099-1108.
    • (2006) Microbiology , vol.152 , pp. 1099-1108
    • Octavia, S.1    Lan, R.2
  • 21
    • 10344243528 scopus 로고    scopus 로고
    • Frequent recombination in a saltern population of Halorubrum
    • Papke, R.T., J.E. Koenig, F. Rodriguez-Valera, and W.F. Doolittle. 2004. Frequent recombination in a saltern population of Halorubrum. Science 306:1928-1929.
    • (2004) Science , vol.306 , pp. 1928-1929
    • Papke, R.T.1    Koenig, J.E.2    Rodriguez-Valera, F.3    Doolittle, W.F.4
  • 22
    • 0017141052 scopus 로고
    • Study of genetic relationships among marine species of the genera Beneckea and Photobactrium by means of in vitro DNA/DNA hybridization
    • Reichelt, J.L., P. Baumann, and L. Baumann. 1976. Study of genetic relationships among marine species of the genera Beneckea and Photobactrium by means of in vitro DNA/DNA hybridization. Arch. Microbiol. 110:101-120.
    • (1976) Arch. Microbiol , vol.110 , pp. 101-120
    • Reichelt, J.L.1    Baumann, P.2    Baumann, L.3
  • 24
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406- 425.
    • (1987) Mol. Biol. Evol. 4:406- , pp. 425
    • Saitou, N.1    Nei, M.2
  • 25
    • 35648960851 scopus 로고    scopus 로고
    • Inferring the evolutionary history of vibrios by means of multilocus sequence analysis
    • Sawabe, T., K. Kita-Tsukamoto, and F.L. Thompson. 2007. Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J. Bacteriol. 189:7932-7936.
    • (2007) J. Bacteriol , vol.189 , pp. 7932-7936
    • Sawabe, T.1    Kita-Tsukamoto, K.2    Thompson, F.L.3
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 33
    • 84962058879 scopus 로고    scopus 로고
    • Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymor- phism (AFLP) and multilocus sequence analysis (MLSA)
    • Thompson, F.L., I. Cleenwerck, J. Swings, J. Matsuyama, and T. Iida. 2007. Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymor- phism (AFLP) and multilocus sequence analysis (MLSA). Microbes Environ. 22:373-379.
    • (2007) Microbes Environ , vol.22 , pp. 373-379
    • Thompson, F.L.1    Cleenwerck, I.2    Swings, J.3    Matsuyama, J.4    Iida, T.5
  • 34
    • 0032979597 scopus 로고    scopus 로고
    • Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the north-western Pacific Ocean and Otsuchi Bay
    • Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the north-western Pacific Ocean and Otsuchi Bay, Japan. Can. J. Microbiol. 45:67-76.
    • (1999) Japan. Can. J. Microbiol , vol.45 , pp. 67-76
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3
  • 35
    • 0033306368 scopus 로고    scopus 로고
    • 16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water
    • Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. 16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water. Can. J. Microbiol. 45:1001-1007.
    • (1999) Can. J. Microbiol , vol.45 , pp. 1001-1007
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3
  • 36
    • 0141817852 scopus 로고    scopus 로고
    • Multi-locus sequence typing: A tool for global epidemiology
    • Urwin, R., and M.C.J. Maiden. 2003. Multi-locus sequence typing: A tool for global epidemiology. Trends Microbiol. 11:479-487.
    • (2003) Trends Microbiol , vol.11 , pp. 479-487
    • Urwin, R.1    Maiden, M.C.J.2
  • 37
    • 58549084151 scopus 로고    scopus 로고
    • A comparison of homologous recombination rates in bacteria and archaea
    • Vos, M., and X. Didelot. 2009. A comparison of homologous recombination rates in bacteria and archaea. ISME J. 3:199-208.
    • (2009) Isme J , vol.3 , pp. 199-208
    • Vos, M.1    Didelot, X.2
  • 38
    • 33747160474 scopus 로고    scopus 로고
    • Population genomics in natural microbial communities. Trends Ecol
    • Whitaker, R.J., and J.F. Banfield. 2006. Population genomics in natural microbial communities. Trends Ecol. Evol. 21:508-516.
    • (2006) Evol , vol.21 , pp. 508-516
    • Whitaker, R.J.1    Banfield, J.F.2
  • 39
    • 0000782587 scopus 로고
    • A list of marine bacteria including descriptions of sixty new species
    • ZoBell, C.E., and H.C. Upham. 1944. A list of marine bacteria including descriptions of sixty new species. Bull. Scripps Inst. Ocean. 5:239-289.
    • (1944) Bull. Scripps Inst. Ocean , vol.5 , pp. 239-289
    • Zobell, C.E.1    Upham, H.C.2


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