16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water

Canadian Journal of Microbiology

Volumn 45, Issue 12, 1999, Pages 1001-1007

  Urakawa, Hidetoshi ^a   Kita Tsukamoto, Kumiko ^a   Ohwada, Kouichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Psychrotroph; Restriction fragment length polymorphism (RFLP) analysis; Vibrio; Vibrio splendidus; Vibrios

Indexed keywords

BACTERIUM; COASTAL WATERS; DNA; GENETIC ANALYSIS;

ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; GENETIC ANALYSIS; GENOTYPE; JAPAN; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VIBRIONACEAE;

JAPAN;

VIBRIO HOLLISAE; VIBRIO SPLENDIDUS; VIBRIONACEAE;

EID: 0033306368     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/w99-105     Document Type: Article

References (29)

1. Austin, B., Garges, S., Conrad, B., Harding, E.E., Colwell, R.R., Simidu, U., and Taga, N. 1979. Comparative study of the aerobic, heterotrophic bacterial flora of Chesapeake Bay and Tokyo Bay. Appl. Environ. Microbiol. 37: 704-714.
2. Blake, P.A., Weaver, R.E., and Hollis, D.G. 1980. Disease of humans (other than cholera) caused by vibrios. Ann. Rev. Microbiol. 34: 341-367.
3. Borrego, J.J., Castro, D., Luque, A., Paillard, C., Maes, P., Garcia, M., and Ventosa, A. 1996. Vibrio tapetis sp. nov., the causative agent of the brown ring disease affecting cultured clams. Int. J. Syst. Bacteriol. 46: 480-484.
4. Bowman, J.P., McCammon, S.A., Nichols, D.S., Skerratt, J.H., Rea, S.M., Nichols, P.D., and McMeekin, T.A. 1997. Shewanella gelidimarina sp. nov., and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5ω3) and grow anaerobically by dissimilatory Fe(III) reduction. Int. J. Syst. Bacteriol. 47: 1040-1047.
5. Chan, K.-Y., Woo, M.L., Lo, K.W., and French, G.L. 1986. Occurrence and distribution of halophilic vibrios in subtropical coastal waters of Hong Kong. Appl. Environ. Microbiol. 52: 1407-1411.
6. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) and manual, v. 3.5c. Department of Genetics, University of Washington, Seattle.
7. Huq, A., and Colwell, R.R. 1995. Vibrios in the marine and estuarine environments. J. Mar. Biotechnol. 3: 60-63.
8. Ishimaru, K., Akagawa-Matsushita, M., and Muroga, K. 1996. Vibrio ichthyoenteri sp. nov., a pathogen of Japanese flounder (Paralichthys olivaceus) larvae. Int. J. Syst. Bacteriol. 46: 155-159.
9. Kita-Tsukamoto, K., Oyaizu, H., Nanba, K., and Simidu, U. 1993. Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences. Int. J. Syst. Bacteriol. 43: 8-19.
10. Kobayashi, T., and Enomoto, S. 1963. Examination of Nakanishi Medium for the isolation of Vibrio cholerae and V. parahaemolyticus. A modified medium (TCBS agar medium) by Kobayashi and Nakanishi. Mod. Media (in Japanese) 9: 250-253.
11. Martin-Kearley, J., and Gow, J.A. 1994a. Numerical taxonomy of Vibrionaceae from Newfoundland coastal waters. Can. J. Microbiol. 40: 355-361.
12. Martin-Kearley, J., and Gow, J.A. 1994b. Numerical analysis and the application of random amplified polymorphic DNA polymerase chain reaction to the differentiation of Vibrio strains from a seasonally cold ocean. Can. J. Microbiol. 40: 446-455.
13. Morita, R.Y. 1975. Psychrophilic bacteria. Bacteriol. Rev. 39: 144-167.
14. Oppenheimer, C.H., and ZoBell, C.E. 1952. The growth and viability of sixty-three species of marine bacteria as influenced by hydrostatic pressure. J. Mar. Res. 11: 10-18.
15. Ortigosa, M., Garay, E., and Pujalte, M. 1994. Numerical taxonomy of Vibrionaceae isolated from oysters and seawater along an annual cycle. Syst. Appl. Microbiol. 17: 216-225.
16. Pedersen, K., Verdonck, L., Austin, B., Austin, D.A., Blanch, A.R., Grimont, P.A.D., Jofre, J., Koblavi, S., Larsen, J.L., Tiainen, T., Vigneulle, M., and Swings, J. 1998. Taxonomic evidence that Vibrio carchariae Grimes et al. 1985 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981. Int. J. Syst. Bacteriol. 48: 749-758.
17. Pinhassi, J., Zweifel, U.L., and Hagström, Å. 1997. Dominant marine bacterioplankton species found among colony-forming bacteria. Appl. Environ. Microbiol. 63: 3359-3366.
18. Rüger, H.-J., and Tan, T.L. 1992. Community structures of cold and low-nutrient adapted heterotrophic sediment bacteria from the deep eastern tropical Atlantic. Mar. Ecol. Prog. Ser. 84: 83-93.
19. Simidu, U., Tsukamoto, K. 1980. A method of the selective isolation and enumeration of marine Vibrionaceae. Microbiol. Ecol. 6: 181-184.
20. Simidu, U., Tsukamoto, K., and Akagi, Y. 1982. Heterotrophic bacterial population in Bengal Bay and the South China Sea. Bull. Jpn. Soc. Sci. Fish. 48: 425-431.
21. Simidu, U., and Tsukamoto, K. 1985. Habitat segregation and biochemical activities of marine members of the family Vibrionaceae. Appl. Environ. Microbiol. 50: 781-790.
22. Sneath, P.H.A., and Sokal, R.R. 1973. Numerical Taxonomy: The principles and Practice of Numerical Classification. W. H. Freeman and Co., San Francisco, California.
23. Sochard, M.R., Wilson, D.F., Austin, B., and Colwell, R.R. 1979. Bacteria associated with the surface and gut of marine copepods. Appl. Environ. Microbiol. 37: 750-759.
24. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1997. 16S rDNA genotyping using PCR/RFLP (restriction fragment length polymorphism) analysis among the family Vibrionaceae. FEMS Microbiol. Lett. 152: 125-132.
25. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1998a. A new approach to separate the genus Photobacterium from Vibrio with RFLP patterns by HhaI digestion of PCR-amplified 16S rDNA. Curr. Microbiol. 36: 171-174.
26. Urakawa, H., Kita-Tsukamoto, K., Steven, S.E., Ohwada, K., and Colwell, R.R. 1998b. A proposal to transfer Vibrio marinus (Russell 1891) to a new genus Moritella gen. nov. as Moritella marina comb. nov. FEMS Microbiol. Lett. 165: 373-378.
27. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1999a. Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the northwestern Pacific Ocean and Otsuchi Bay, Japan. Can. J. Microbiol. 45: 67-76.
28. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1999b. Reassessment of the taxonomic position of Vibrio iliopiscarius (Onarheim et al. 1994) and proposal for Photobacterium iliopiscarium comb. nov. Int. J. Syst. Bacteriol. 49: 257-260.
29. Yoshimizu, M., and Kimura, T. 1976. Study on the intestinal microflora of salmonids. Fish Pathol. 10: 243-259.