Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the northwestern Pacific Ocean and Otsuchi Bay, Japan

Canadian Journal of Microbiology

Volumn 45, Issue 1, 1999, Pages 67-76

  Urakawa, Hidetoshi ^a   Kita Tsukamoto, Kumiko ^a   Ohwada, Kouichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Photobacterium; Restriction analysis; Vibrio; Vibrio marinus (Moritella marina); Vibrio splendidus

Indexed keywords

RESTRICTION ENDONUCLEASE;

ANALYTIC METHOD; ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; BACTERIUM ISOLATION; JAPAN; NONHUMAN; PACIFIC OCEAN; PHOTOBACTERIUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; SEASHORE; VIBRIO;

EID: 0032979597     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/cjm-45-1-67     Document Type: Article

References (48)

1. Alcorn, S.M., Oram, T.V., Steigerwalt, A.G., Foster, J.L.M., Fogleman, J.C., and Brenner, D.J. 1991. Taxonomy and pathogenicity of Erwinia cacticida sp. nov. Int. J. Syst. Bacteriol. 41: 197-212.
2. Austin, B., Garges, S., Conrad, B., Harding, E.E., Colwell, R.R., Simidu, U., and Taga, N. 1979. Comparative study of the aerobic, heterotrophic bacterial flora of Chesapeake Bay and Tokyo Bay. Appl. Environ. Microbiol. 37: 704-714.
3. Austin, B., Austin, D.A., Blanch, A.R., Cerda, M., Grimont, F., Grimont, P.A.D., Jofre, J., Koblavi, S., Larsen. J.L., Pedersen. K., Tiainen. T., Verdonck, L., and Swings, J. 1997. A comparison of methods for typing of fish-pathogenic Vibrio spp. Syst. Appl. Microbiol. 20: 89-101.
4. Baumann, P., and Baumann, L. 1984. Genus II. Photobacterium. In Bergey's manual of systematic bacteriology. Vol. 1. Edited by N.R. Krieg and J.G. Holt. Williams & Wilkins Co., Baltimore, Md. pp. 539-545.
5. Baumann, P., and Schubert, R.H.W. 1984. Family II. Vibrionaceae. In Bergey's manual of systematic bacteriology. Vol. I. Edited by N.R. Krieg and J.G. Holt. Williams & Wilkins Co., Baltimore, Md. pp. 516-517.
6. Blake, P.A., Weaver, R.E., and Hollis, D.G. 1980. Disease of humans (other than cholera) caused by vibrios. Annu. Rev. Microbiol. 34: 341-367.
7. Boivin-Jahns, V., Bianchi, A., Ruimy, R., Garcin, J., Daumas, S., and Christen, R. 1995. Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment. Appl. Environ. Microbiol. 61: 3400-3406.
8. Borrego, J.J., Castro, D., Luque, A., Paillard, C., Maes, P., Garcia, M., and Ventosa, A. 1996. Vibrio tapetis sp. nov., the causative agent of the brown ring disease affecting cultured clams. Int. J. Syst. Bacteriol. 46: 480-484.
9. Bowman, J.P., McCammon, S.A., Brown, M.V, Nichols, D.S., and McMeekin, T.A. 1997. Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl. Environ. Microbiol. 63: 3068-3078.
10. Brosius, J., Palmer, M.L., Kennedy, P.J., and Noller, H.F. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 75: 4801-4805.
11. Buck, J.D. 1982. Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl. Environ. Microbiol. 44: 992-993.
12. Chan, K.-Y., Woo, M.L., Lo, K.W., and French, G.L. 1986. Occurrence and distribution of halophilic vibrios in subtropical coastal waters of Hong Kong. Appl. Environ. Microbiol. 52: 1407-1411.
13. Colwell, R.R., and Morita, R.Y. 1964. Reisolation and emendation of description of Vibrio marinus (Russell) Ford. J. Bacteriol. 88: 831-837.
14. Egidius, E., Wiik, R., Hoff, K.A., and Hjeltnes, B. 1986. Vibrio salmonicida sp. nov., a new fish pathogen. Int. J. Syst. Bacteriol. 36: 518-520.
15. Esteve, C. 1995. Numerical taxonomy of Aeromonadaceae and Vibrionaceae associated with reared fish and surrounding fresh and brackish water. Syst. Appl. Microbiol. 18: 391-402.
16. Ezura, Y., and Simidu, U. 1990. Identification scheme for marine bacteria. (In Japanese). In Engan Kankyo Chousa Manual II. Edited by Oceanographic Society of Japan. Kouseisha-kouseikoku, Tokyo. pp. 357-364.
17. Farmer, J.J., III. 1992. The family Vibrionaceae. In The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. Vol. III. Edited by A. Balows, H.G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer. Springer-Verlag, New York. pp. 2938-2951.
18. Farmer, J.J., III, and Hickman-Brenner, F.W. 1992. The genera Vibrio and Photobacterium. In The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. Vol. III. Edited by A. Balows, H.G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer. Springer-Verlag, New York. pp. 2952-3011.
19. Grimes, D.J., Jacobs, D., Swartz, D.G., Brayton, P.R., and Colwell, R.R. 1993. Numerical taxonomy of gram-negative, oxidase-positive rods from carcharhinid sharks. Int. J. Syst. Bacteriol. 43: 88-98.
20. Hugh, R., and Leifson, E. 1953. The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J. Bacteriol. 66: 24-26.
21. Huq, A., and Colwell, R.R. 1995. Vibrios in the marine and estuarine environments. J. Mar. Biotechnol. 3: 60-63.
22. Ishimaru, K., Akagawa-Matsushita, M., and Muroga, K. 1995. Vibrio penaeicida sp. nov., a pathogen of kuruma prawns (Penaeus japonicus). Int. J. Syst. Bacteriol. 45: 134-138.
23. Ishimaru, K., Akagawa-Matsushita, M., and Muroga, K. 1996. Vibrio ichthyoenteri sp. nov., a pathogen of Japanese flounder (Paralichthys olivaceus) larvae. Int. J. Syst. Bacteriol. 46: 155-159.
24. MacDonell, M.T., and Colwell, R.R. 1984. The nucleotide sequence of 5S ribosomal RNA from Vibrio marinus, Microbiol. Sci. 1: 229-231.
25. Martin-Kearley, J., and Gow, J.A. 1994a. Numerical taxonomy of Vibrionaceae from Newfoundland coastal waters. Can. J. Microbiol. 40: 355-361.
26. Martin-Kearley, J., and Gow, J.A. 1994b. Numerical analysis and the application of random amplified polymorphic DNA polymerase chain reaction to the differentiation of Vibrio strains from a seasonally cold ocean. Can. J. Microbiol. 40: 446-455.
27. Morita, R.Y 1975. Psychrophilic bacteria. Bacteriol. Rev. 39: 144-167.
28. Nealson, K.H., and Hastings, J.W. 1992. The luminous bacteria. In The prokaryotes, a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. Vol. III. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer. Springer-Verlag, New York. pp. 625-639.
29. Onarheim, A.M., Wiik, R., Burghardt, J., and Stackebrandt, E. 1994. Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. Syst. Appl. Microbiol. 17: 370-379.
30. Oppenheimer, C.H., and ZoBell, C.E. 1952. The growth and viability of sixty-three species of marine bacteria as influenced by hydrostatic pressure. J. Mar. Res. 11: 10-18.
31. Ortigosa, M., Garay, E., and Pujolte, M. 1994. Numerical taxonomy of Vibrionaceae isolated from oysters and seawater along an annual cycle. Syst. Appl. Microbiol. 17: 216-225.
32. Otobe, H., Kaga, A., Sasaki, C., Morita, K., Hirano, K., Sawatari, K., and Kawamura, T. 1995. Results of oceanographic and meteorological observations. Otsuchi Mar. Res. Cent. Rep. 21: 93-109.
33. Ruimy, R., Breittmayer, V., Elbaze, P., Lafay, B., Boussemart, O., Gauthier, M., and Christen, R. 1994. Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small subunit rRNA sequences. Int. J. Syst. Bacteriol. 44: 416-426.
34. Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
35. Shewan, J.M., Hobbs, G., and Hodgkiss, W. 1960. A determinative scheme for the identification of certain genera of gram-negative bacteria, with special reference to the Pseudomonadaceae. J. Appl. Bacteriol. 23: 379-390.
36. Simidu, U., and Tsukamoto, K. 1985. Habitat segregation and biochemical activities of marine members of the family Vibrionaceae. Appl. Environ. Microbiol. 50: 781-790.
37. Simidu, U., Tsukamoto, K., and Akagi, Y. 1982. Heterotrophic bacterial population in Bengal Bay and the South China Sea. Bull. Jpn. Soc. Sci. Fish. 48: 425-431.
38. Sochard, M.R., Wilson, D.F., Austin, B., and Colwell, R.R. 1979. Bacteria associated with the surface and gut of marine copepods. Appl. Environ. Microbiol. 37: 750-759.
39. Steven, S.E. 1990. Molecular systematics of Vibrio and Photobacterium. Ph.D. thesis. University of Maryland, College Park, Md.
40. Sugita, H., Ueda, R., Berger, L.R., and Deguchi, Y. 1987. Microflora in the gut of Japanese coastal Crustacea. Bull. Jpn. Soc. Sci. Fish. 53: 1647-1655.
41. Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
42. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1997. 16S rDNA genotyping using PCR/RFLP (restriction fragment length polymorphism) analysis among the family Vibrionaceae. FEMS Microbiol. Lett. 152: 125-132.
43. Urakawa, H., Kita-Tsukamoto, K., and Ohwada, K. 1998a. A new approach to separate the genus Photobacterium from Vibrio with RFLP patterns by Hhal digestion of PCR-amplified 16S rDNA. Curr. Microbiol. 36: 171-174.
44. Urakawa, H., Kita-Tsukamoto, K., Steven, S. E., Ohwada, K., and Colwell, R. R. 1998b. A proposal to transfer Vibrio marinus (Russell 1891) to a new genus Moritella gen. nov. as Moritella marina comb. nov. FEMS Microbiol. Lett. 165: 373-378.
45. Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimont, P.A.D., Kandler, O., Krichevsky, M.I., Moore, L.H., Moore, W.E.C., Murray, R.G.E, Stackebrandt, E., Starr, M.P., and Trüper, H.G. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464.
46. West, P.A., Brayton, P.R., Bryant, T.N., and Colwell, R.R. 1986. Numerical taxonomy of vibrios isolated from aquatic environments. Int. J. Syst. Bacteriol. 36: 531-543.
47. Yoshimizu, M., and Kimura, T. 1976. Study on the intestinal microflora of salmonids. Fish Pathol. 10: 243-259.
48. ZoBell, C.E. 1946. Marine microbiology. Chronica Botanica, Waltham, Mass.