Comparison of DNA, aminoethylglycyl PNA and pyrrolidinyl PNA as probes for detection of DNA hybridization using surface plasmon resonance technique

Biosensors and Bioelectronics

Volumn 25, Issue 5, 2010, Pages 1064-1069

  Ananthanawat, Cheeraporn ^a   Vilaivan, Tirayut ^b   Hoven, Voravee P ^b   Su, Xiaodi ^c  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b Faculty of Science   (Thailand)

^c INSTITUTE OF MATERIALS RESEARCH AND ENGINEERING   (Singapore)

Author keywords

DNA sensor; Mismatch discrimination; Peptide nucleic acid; PNA; Pyrrolidinyl PNA; SPR

Indexed keywords

BIOTIN-STREPTAVIDIN; DIAGNOSTIC APPLICATIONS; DNA CONCENTRATION; DNA HYBRIDIZATION; DNA SENSORS; EFFECT OF IONIC STRENGTH; HYBRIDIZATION EFFICIENCY; LOW IONIC STRENGTH; PEPTIDE NUCLEIC ACID; REGENERATION CYCLES; SENSING PROBE; SENSOR PROBES; SINGLE-BASE MISMATCH; SOLID-PHASE; SURFACE PLASMON RESONANCE SENSOR; SURFACE PLASMONS;

AMINES; BIOASSAY; BIOCHIPS; BIOMOLECULES; DNA; GENES; IONIC STRENGTH; PEPTIDES; PLASMONS; PROBES; SENSORS; SURFACE PLASMON RESONANCE; TARGETS;

NUCLEIC ACIDS;

2 AMINOCYCLOPENTANECARBOXYLIC ACID; BIOTIN; DNA; GLYCINE DERIVATIVE; PEPTIDE NUCLEIC ACID; PYRROLIDINE DERIVATIVE; SODIUM HYDROXIDE; STREPTAVIDIN;

ARTICLE; BASE MISPAIRING; BIOSENSOR; BIOTINYLATION; CHEMICAL INTERACTION; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CULTURE MEDIUM; DNA BINDING; DNA HYBRIDIZATION; INTERMETHOD COMPARISON; IONIC STRENGTH; MOLECULAR PROBE; PROTEIN IMMOBILIZATION; SURFACE PLASMON RESONANCE;

BIOSENSING TECHNIQUES; DNA; DNA PROBES; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; GLYCINE; IN SITU HYBRIDIZATION; MOLECULAR PROBE TECHNIQUES; PEPTIDE NUCLEIC ACIDS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SURFACE PLASMON RESONANCE;

EID: 71849105931     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2009.09.028     Document Type: Article

References (38)

1. Ananthanawat C., Vilaivan T., and Hoven V.P. Sens. Actuators B: Chem. 137 (2009) 215-221
2. Ananthanawat C., Vilaivan T., Mekboonsonglarp W., and Hoven V.P. Biosens. Bioelectron. 24 (2009) 3544-3549
3. Arlinghaus H.F., Ostrop M., Friedrichs O., and Feldner J.C. Appl. Surf. Sci. 203-204 (2003) 689-692
4. Arlinghaus H.F., SchrÖder M., Feldner J.C., Brandt O., Hoheisel J.D., and Lipinsky D. Appl. Surf. Sci. 231-232 (2004) 392-396
5. Bart M., Van Os P.J.H.J., Kamp B., Bult A., and Van Bennekom W.P. Sens. Actuators A: Chem. 84 (2002) 129-135
6. Boontha B., Nakkuntod J., Hirankarn N., Chaumpluk P., and Vilaivan T. Anal. Chem. 80 (2008) 8178-8186
7. Burgener M., Sanger M., and Candrian U. Bioconjug. Chem. 11 (2000) 749-754
8. Brewer S.H., Anthireya S.J., Lappi S.E., Drapcho D.L., and Franzen S. Langmuir 18 (2002) 4460-4464
9. Egholm M., Nielsen P.E., Buchardt O., and Berg R.H. J. Am. Chem. Soc. 114 (1992) 1895-1897
10. Egholm M., Buchardt O., Christensen L., Behrens C., Freier S.M., Driver D.A., Berg R.H., Kim S.K., Nordén B., and Nielsen P.E. Nature 365 (1993) 566-568
11. Feldner J.C., Ostrop M., Friedrichs O., Sohn S., and Lipinsky D. Appl. Surf. Sci. 203-204 (2003) 722-725
12. Herne T.M., and Tarlov M.J. J. Am. Chem. Soc. 119 (1997) 8916-8920
13. Höök F., Ray A., Nordén B., and Kasemo B. Langmuir 17 (2001) 8305-8312
14. Jensen K.K., Örum H., Nielsen P.E., and Nordén B. Biochemistry 36 (1997) 5072-5077
15. Knoll W., Zizlsperger M., Liebermann T., Arnold S., Badia A., Liley M., Piscevic D., and Schmitt F.-J. Colloids Surf. A 161 (2000) 115-137
16. Korkaew P., and Vilaivan T. Nucleic Acids Symp. Ser. 52 (2008) 251-252
17. Lao A.I.K., Su X.D., and Aung K.M.M. Biosens. Bioelectron. 24 (2009) 1717-1722
18. Mannelli I., Minunni M., Tombelli S., Wang R., Spiriti M.M., and Mascini M. Bioelectrochemistry 66 (2005) 129-138
19. Nelson K.E., Gamble L., Jung L.S., Boeckl M.S., Naeemi E., Golledge S.L., Sasaki T., Castner D.G., Campbell C.T., and Stayton P.S. Langmuir 17 (2001) 2807-2816
20. Nielsen P.E., Egholm M., Berg R.H., and Buchardt O. Science 254 (1991) 1497-1500
21. Park H., Germini A., Sforza S., Corradini R., Marchelli R., and Knoll W. Biointerphases 2 (2007) 80-88
22. Sato Y., Fujimoto K., and Kawaguchi H. Colloid Surf. B: Biointerfaces 27 (2003) 23-31
23. Siriwong K., Chuichay P., Saen-oon S., Suparpprom C., Vilaivan T., and Hannongbua S. Biochem. Biophys. Res. Commun. 372 (2008) 765-771
24. Spinke J., Liley M., Guder H.J., Augerwaier L., and Knoll W. Langmuir 9 (1993) 1821-1825
25. Spinke J., Liley M., Schwitt F.J., Guder H.J., Augerwaier L., and Knoll W.J. Chem. Phys. 99 (1993) 7012-7019
26. Su X.D., Robelek R., Wu Y., Wang G., and Knoll W. Anal. Chem. 76 (2004) 489-494
27. Su X.D., Wu Y.J., and Knoll W. Biosens. Bioelectron. 21 (2005) 719-726
28. Su X.D., Wu Y.J., Robelek R., and Knoll W. Langmuir 21 (2005) 348-353
29. Su X.D., Teh H.F., Aung K.M.M., Zong Y., and Gao Z. Biosens. Bioelectron. 23 (2008) 1715-1720
30. Suparpprom C., Srisuwannaket C., Sangvanich P., and Vilaivan T. Tetrahedron Lett. 46 (2005) 2833-2837
31. Tombelli S., Minunni M., and Mascini M. Methods 37 (2005) 48-56
32. Tomac S., Sarkar M., Ratilanen T., Wittung P., Nielsen P.E., Nordén B., and Graslund A. J. Am. Chem. Soc. 118 (1996) 5544
33. Vilaivan T., and Srisuwannaket C. Org. Lett. 8 (2006) 1897-1900
34. Wang Q., Yang X., and Wang K. Sens. Actuators B: Chem. 123 (2007) 227-232
35. Wink T., Van Zuilen S.J., Bult A., and Van Bennekom W.P. Anal. Chem. 70 (1998) 827-832
36. Wittung-Stafshede P., Rodahl M., Kasemo B., Nielsen P., and Norden B. Colloids Surf. A 174 (2000) 269-273
37. Xu F., Pellino A.M., and Knoll W. Thin Solid Films 516 (2008) 8634-8639
38. Zhou X.C., Huang L.Q., and Li S.F.Y. Biosens. Bioelectron. 16 (2001) 85-95