-
1
-
-
0025913035
-
Bacterial metabolism of 3-chloroacrylic acid
-
Hartmans, S., Jansen, M. W., van der Werf, M. J., and de Bont, J. A. M. (1991) Bacterial metabolism of 3-chloroacrylic acid. J. Gen. Microbiol. 137, 2025-2032.
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 2025-2032
-
-
Hartmans, S.1
Jansen, M.W.2
Van Der Werf, M.J.3
De Bont, J.A.M.4
-
2
-
-
0026398921
-
Bacterial degradation of 3-chloroacrylic acid and the characterization of cis- And trans-specific dehalogenases
-
van Hylckama Vlieg, J. E. T., and Janssen, D. B. (1992) Bacterial degradation of 3-chloroacrylic acid and the characterization of cis- and trans-specific dehalogenases. Biodegradation 2, 139-150.
-
(1992)
Biodegradation
, vol.2
, pp. 139-150
-
-
Van Hylckama Vlieg, J.E.T.1
Janssen, D.B.2
-
3
-
-
0031879208
-
Degradation of 1,3-dichloropropene by Pseudomonas cichorii 170
-
Poelarends, G. J., Wilkens, M., Larkin, M. J., van Elsas, J. D., and Janssen, D. B. (1998) Degradation of 1,3-dichloropropene by Pseudomonas cichorii 170. Appl. Environ. Microbiol. 64, 2931-2936.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2931-2936
-
-
Poelarends, G.J.1
Wilkens, M.2
Larkin, M.J.3
Van Elsas, J.D.4
Janssen, D.B.5
-
4
-
-
0034972743
-
Trans-3-chloroacrylic acid dehalogenase from pseudomonas pavonaceae 170 shares structural and mechanistic similarities with 4-oxalocrotonate tautomerase
-
DOI 10.1128/JB.183.14.4269-4277.2001
-
Poelarends, G. J., Saunier, R., and Janssen, D. B. (2001) trans-3- Chloroacrylic acid dehalogenase from Pseudomonas pavonaceae 170 shares structural and mechanistic similarities with 4-oxalocrotonate tautomerase. J. Bacteriol. 183, 4269-4277. (Pubitemid 32568079)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.14
, pp. 4269-4277
-
-
Poelarends, G.J.1
Saunier, R.2
Janssen, D.B.3
-
5
-
-
1642576243
-
Cloning, Expression, and Characterization of a cis-3-Chloroacrylic Acid Dehalogenase: Insights into the Mechanistic, Structural, and Evolutionary Relationship between Isomer-Specific 3-Chloroacrylic Acid Dehalogenases
-
DOI 10.1021/bi0355948
-
Poelarends, G. J., Serrano, H., Person, M. D., Johnson, W. H., Jr., Murzin, A. G., and Whitman, C. P. (2004) Cloning, expression, and characterization of a cis-3-chloroacrylic acid dehalogenase: insights into the mechanistic, structural, and evolutionary relationship between isomer-specific 3-chloroacrylic acid dehalogenases. Biochemistry 43, 759-772. (Pubitemid 38114064)
-
(2004)
Biochemistry
, vol.43
, Issue.3
, pp. 759-772
-
-
Poelarends, G.J.1
Serrano, H.2
Person, M.D.3
Johnson Jr., W.H.4
Murzin, A.G.5
Whitman, C.P.6
-
6
-
-
0029950031
-
Structural classification of proteins: New superfamilies
-
Murzin, A. G. (1996) Structural classification of proteins: new superfamilies. Curr. Opin. Struct. Biol. 6, 386-394.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 386-394
-
-
Murzin, A.G.1
-
7
-
-
56549088539
-
The chemical versatility of the β-α-β fold: Catalytic promiscuity and divergent evolution in the tautomerase superfamily
-
Poelarends, G. J., Veetil, V. P., and Whitman, C. P. (2008) The chemical versatility of the β-α-β fold: catalytic promiscuity and divergent evolution in the tautomerase superfamily. Cell. Mol. Life Sci. 65, 3606-3618.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 3606-3618
-
-
Poelarends, G.J.1
Veetil, V.P.2
Whitman, C.P.3
-
8
-
-
0041846667
-
Reactions of trans-3-chloroacrylic acid dehalogenase with acetylene substrates: Consequences of and evidence for a hydration reaction
-
Wang, S. C., Person,M. D., Johnson, W. H., Jr., and Whitman, C. P. (2003) Reactions of trans-3-chloroacrylic acid dehalogenase with acetylene substrates: consequences of and evidence for a hydration reaction. Biochemistry 42, 8762-8773.
-
(2003)
Biochemistry
, vol.42
, pp. 8762-8773
-
-
Wang, S.C.1
Person, M.D.2
Johnson Jr., W.H.3
Whitman, C.P.4
-
9
-
-
1642483053
-
The X-ray structure of trans-3-chloroacrylic acid dehalogenase reveals a novel hydration mechanism in the tautomerase superfamily
-
de Jong, R. M., Brugman, W., Poelarends, G. J., Whitman, C. P., and Dijkstra, B. W. (2004) The X-ray structure of trans-3-chloroacrylic acid dehalogenase reveals a novel hydration mechanism in the tautomerase superfamily. J. Biol. Chem. 279, 11546-11552.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 11546-11552
-
-
De Jong, R.M.1
Brugman, W.2
Poelarends, G.J.3
Whitman, C.P.4
Dijkstra, B.W.5
-
10
-
-
1842531456
-
The roles of active-site residues in the catalytic mechanism of trans-3-chloroacrylic acid dehalogenase: A kinetic, NMR, and mutational analysis
-
Azurmendi, H. F., Wang, S. C., Massiah, M. A., Poelarends, G. J., Whitman, C. P., and Mildvan, A. S. (2004) The roles of active-site residues in the catalytic mechanism of trans-3-chloroacrylic acid dehalogenase: a kinetic, NMR, and mutational analysis. Biochemistry 43, 4082-4091.
-
(2004)
Biochemistry
, vol.43
, pp. 4082-4091
-
-
Azurmendi, H.F.1
Wang, S.C.2
Massiah, M.A.3
Poelarends, G.J.4
Whitman, C.P.5
Mildvan, A.S.6
-
11
-
-
34047269260
-
Crystal structures of wild type and inactivated cis-3- Chloroacrylic acid dehalogenase: The structural basis for substrate specificity and inactivation by (R)-oxirane-2-carboxylate
-
de Jong, R. M., Bazzacco, P., Poelarends, G. J., Johnson, W. H., Jr., Kim, Y.-J., Burks, E. A., Serrano, H., Whitman, C. P., and Dijkstra, B. W. (2007) Crystal structures of wild type and inactivated cis-3- chloroacrylic acid dehalogenase: the structural basis for substrate specificity and inactivation by (R)-oxirane-2-carboxylate. J. Biol. Chem. 282, 2440-2449.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 2440-2449
-
-
De Jong, R.M.1
Bazzacco, P.2
Poelarends, G.J.3
Johnson Jr., W.H.4
Kim, Y.-J.5
Burks, E.A.6
Serrano, H.7
Whitman, C.P.8
Dijkstra, B.W.9
-
12
-
-
34548090241
-
The phenylpyruvate tautomerase activity of trans-3- Chloroacrylic acid dehalogenase: Evidence for an enol intermediate in the dehalogenase reaction?
-
Poelarends, G. J., Serrano, H., Johnson, W. H., Jr., and Whitman, C. P. (2007) The phenylpyruvate tautomerase activity of trans-3- chloroacrylic acid dehalogenase: evidence for an enol intermediate in the dehalogenase reaction? Biochemistry 46, 9596-9604.
-
(2007)
Biochemistry
, vol.46
, pp. 9596-9604
-
-
Poelarends, G.J.1
Serrano, H.2
Johnson Jr., W.H.3
Whitman, C.P.4
-
13
-
-
60549105802
-
Global kinetic explorer: A new computer program for dynamic simulation and fitting of kinetic data
-
Johnson, K. A., Simpson, Z. B., and Blom, T. (2009) Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data. Anal. Biochem. 387, 20-29.
-
(2009)
Anal. Biochem.
, vol.387
, pp. 20-29
-
-
Johnson, K.A.1
Simpson, Z.B.2
Blom, T.3
-
14
-
-
60549112465
-
FitSpace explorer: An algorithm to evaluate multidimensional parameter space in fitting kinetic data
-
Johnson, K. A., Simpson, Z. B., and Blom, T. (2009) FitSpace explorer: an algorithm to evaluate multidimensional parameter space in fitting kinetic data. Anal. Biochem. 387, 30-41.
-
(2009)
Anal. Biochem.
, vol.387
, pp. 30-41
-
-
Johnson, K.A.1
Simpson, Z.B.2
Blom, T.3
-
15
-
-
0001479670
-
A simple ultraviolet spectrophotometric method for the determination of protein
-
Waddell, W. J. (1956) A simple ultraviolet spectrophotometric method for the determination of protein. J. Lab. Clin. Med. 48, 311-314.
-
(1956)
J. Lab. Clin. Med.
, vol.48
, pp. 311-314
-
-
Waddell, W.J.1
-
16
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
17
-
-
0642315208
-
Transient-state kinetic analysis of enzyme reaction pathways
-
Sigman, D. S., Ed. 3rd ed., Academic Press, San Diego
-
Johnson, K. A. (1992) Transient-state kinetic analysis of enzyme reaction pathways, in The Enzymes (Sigman, D. S., Ed.) 3rd ed., pp 1-61, Academic Press, San Diego.
-
(1992)
The Enzymes
, pp. 1-61
-
-
Johnson, K.A.1
-
18
-
-
0015972948
-
A simple graphical method for determining the inhibition constants of mixed, uncompetitive and non-competitive inhibitors
-
Cornish-Bowden, A. (1974) A simple graphical method for determining the inhibition constants of mixed, uncompetitive and non-competitive inhibitors. Biochem. J. 137, 143-144.
-
(1974)
Biochem. J.
, vol.137
, pp. 143-144
-
-
Cornish-Bowden, A.1
-
19
-
-
77049143386
-
The determination of enzyme inhibitor constants
-
Dixon, M. (1953) The determination of enzyme inhibitor constants. Biochem. J. 55, 170-171.
-
(1953)
Biochem. J.
, vol.55
, pp. 170-171
-
-
Dixon, M.1
-
21
-
-
2642526986
-
Stereospecific alkylation of cis-3-chloroacrylic acid dehalogenase by (R)-oxirane-2-carboxylate: Analysis and mechanistic implications
-
DOI 10.1021/bi049823h
-
Poelarends, G. J., Serrano, H., Johnson, W. H., Jr., and Whitman, C. P. (2004) Stereospecific alkylation of cis-3-chloroacrylic acid dehalogenase by (R)-oxirane-2-carboxylate: analysis and mechanistic implications. Biochemistry 43, 7187-7196. (Pubitemid 38720536)
-
(2004)
Biochemistry
, vol.43
, Issue.22
, pp. 7187-7196
-
-
Poelarends, G.J.1
Serrano, H.2
Johnson Jr., W.H.3
Whitman, C.P.4
-
22
-
-
0011919360
-
Microbial dehalogenases
-
Barton, D., and Nakanishi, K., Eds. Elsevier, Amsterdam
-
Copley, S. D. (1999) Microbial dehalogenases, in Comprehensive Natural Products Chemistry (Barton, D., and Nakanishi, K., Eds.) Vol.5, pp 401-422, Elsevier, Amsterdam.
-
(1999)
Comprehensive Natural Products Chemistry
, vol.5
, pp. 401-422
-
-
Copley, S.D.1
-
23
-
-
1842479420
-
Evolving haloalkane dehalogenases
-
Janssen, D. B. (2004) Evolving haloalkane dehalogenases. Curr. Opin. Chem. Biol. 8, 150-159.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 150-159
-
-
Janssen, D.B.1
-
24
-
-
0027337615
-
Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase
-
DOI 10.1038/363693a0
-
Verschueren, K. H., Seljée, F., Rozeboom, H. J., Kalk, K. H., and Dijkstra, B. W. (1993) Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase. Nature 363, 693-698. (Pubitemid 23227646)
-
(1993)
Nature
, vol.363
, Issue.6431
, pp. 693-698
-
-
Verschueren, K.H.G.1
Seljee, F.2
Rozeboom, H.J.3
Kalk, K.H.4
Dijkstra, B.W.5
-
25
-
-
0027819259
-
Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site
-
Verschueren, K. H., Kingma, J., Rozeboom, H. J., Kalk, K. H., Janssen, D. B., and Dijkstra, B. W. (1993) Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site. Biochemistry 32, 9031-9037.
-
(1993)
Biochemistry
, vol.32
, pp. 9031-9037
-
-
Verschueren, K.H.1
Kingma, J.2
Rozeboom, H.J.3
Kalk, K.H.4
Janssen, D.B.5
Dijkstra, B.W.6
-
26
-
-
15844362298
-
Specificity and kinetics of haloalkane dehalogenase
-
Schanstra, J. P., Kingma, J., and Janssen, D. B. (1996) Specificity and kinetics of haloalkane dehalogenase. J. Biol. Chem. 271, 14747-14753.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 14747-14753
-
-
Schanstra, J.P.1
Kingma, J.2
Janssen, D.B.3
-
27
-
-
0029946082
-
Kinetics of halide release of haloalkane dehalogenase: Evidence for a slow conformational change
-
Schanstra, J. P., and Janssen, D. B. (1996) Kinetics of halide release of haloalkane dehalogenase: evidence for a slow conformational change. Biochemistry 35, 5624-5632.
-
(1996)
Biochemistry
, vol.35
, pp. 5624-5632
-
-
Schanstra, J.P.1
Janssen, D.B.2
-
28
-
-
0030037645
-
Structure of 4-chlorobenzoyl coenzyme a dehalogenase determined to 1.8 Å resolution: An enzyme catalyst generated via adaptive mutation
-
DOI 10.1021/bi960768p
-
Benning, M. M., Taylor, K. L., Liu, R.-Q., Yang, G., Xiang, H., Wesenberg, G., Dunaway-Mariano, D., and Holden, H. M. (1996) Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 Å resolution: an enzyme catalyst generated via adaptive mutation. Biochemistry 35, 8103-8109. (Pubitemid 26234908)
-
(1996)
Biochemistry
, vol.35
, Issue.25
, pp. 8103-8109
-
-
Henning, M.M.1
Taylor, K.L.2
Liu, R.-Q.3
Yang, G.4
Xiang, H.5
Wesenberg, G.6
Dunaway-Mariano, D.7
Holden, H.M.8
-
29
-
-
0035856520
-
Histidine 90 function in 4-chlorobenzoyl-coenzyme a dehalogenase catalysis
-
DOI 10.1021/bi0114426
-
Zhang, W., Wei, Y., Luo, L., Taylor, K. L., Yang, G., Dunaway- Mariano, D., Benning, M. M., and Holden, H. M. (2001) Histidine 90 function in 4-chlorobenzoyl-coenzyme A dehalogenase catalysis. Biochemistry 40, 13474-13482. (Pubitemid 33130775)
-
(2001)
Biochemistry
, vol.40
, Issue.45
, pp. 13474-13482
-
-
Zhang, W.1
Wei, Y.2
Luo, L.3
Taylor, K.L.4
Yang, G.5
Dunaway-Mariano, D.6
Benning, M.M.7
Holden, H.M.8
-
30
-
-
0029031905
-
Transient state kinetic analysis of the chemical intermediates formed in the enzymatic dehalogenation of 4-chlorobenzoyl-coenzyme A
-
Liu, R.-Q., Liang, P.-H., Scholten, J., and Dunaway-Mariano, D. (1995) Transient state kinetic analysis of the chemical intermediates formed in the enzymatic dehalogenation of 4-chlorobenzoyl-coenzyme A. J. Am. Chem. Soc. 117, 5003-5004.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5003-5004
-
-
Liu, R.-Q.1
Liang, P.-H.2
Scholten, J.3
Dunaway-Mariano, D.4
-
31
-
-
6444229663
-
QM/MMstudies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics
-
Xu, D., Wei, Y., Wu, J., Dunaway-Mariano, D., Guo, H., Cui, Q., and Gao, J. (2004)QM/MMstudies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics. J. Am. Chem. Soc. 126, 13649-13658.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13649-13658
-
-
Xu, D.1
Wei, Y.2
Wu, J.3
Dunaway-Mariano, D.4
Guo, H.5
Cui, Q.6
Gao, J.7
-
32
-
-
30144432502
-
Contributions of long-range electrostatic interactions to 4-chlorobenzoyl-CoA dehalogenase catalysis: A combined theoretical and experimental study
-
DOI 10.1021/bi051477w
-
Wu, J., Xu, D., Lu, X., Wang, C., Guo, H., and Dunaway-Mariano, D. (2006) Contributions of long-range electrostatic interactions to 4-chlorobenzoyl-CoA dehalogenase catalysis: a combined theoretical and experimental study. Biochemistry 45, 102-112. (Pubitemid 43054087)
-
(2006)
Biochemistry
, vol.45
, Issue.1
, pp. 102-112
-
-
Wu, J.1
Xu, D.2
Lu, X.3
Wang, C.4
Guo, H.5
Dunaway-Mariano, D.6
|