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Dali: A network tool for protein structure comparison
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Holm L, Sander C: Dali: a network tool for protein structure comparison. Trends Biochem Sci 1995, 20:478-480. This effective tool for detection of similarities to known structures in the PDB database has come to the internet (see URL: http://www.embl-heidelberg.de/dali/).
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Trends Biochem Sci
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β-Glucosyltransferase and phosphorylase reveal their common theme
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Nat Struct Biol
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Evolutionary link between glycogen phosphorylase and a DNa modifying enzyme
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Holm L, Sander C: Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme. EMBO J 1995, 14:1287-1293. This paper, together with [8••] reports a striking structural similarity between a large protein and a very large protein detected by different computer algorithms: PROTEP for the former, and Dali for the latter. The similarity is so extensive that there is little doubt about the common evolutionary origin of the two enzymes, which also retain a functional similarity. The authors of [8••] are cautious in making this conclusion, however.
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EMBO J
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DNA polymerase β belongs to an ancient nucleotidyltransferase superfamily
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Holm L, Sander C: DNA polymerase β belongs to an ancient nucleotidyltransferase superfamily. Trends Biochem Sci 1995, 20:345-347. On the basis of morphological similarities, DNA polymerase β was proposed to be distantly related to other DNA and RNA polymerases of known structure. This hypothesis is disproved here by the discovery of its true evolutionary relation.
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Trends Biochem Sci
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0029001623
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Endrizzi J, Cronk J, Wang W, Crabtree G, Alber T: Crystal structure of DCoH, a bifunctional protein binding transcriptional coactivator. Science 1995, 268:556-559.
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0028999219
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Three-dimensional structure of the bifunctional protein PCD/DCoH, a cytoplasmic enzyme interacting with transcription factor HNF1
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Ficner R, Sauer UH, Stier G, Suck D: Three-dimensional structure of the bifunctional protein PCD/DCoH, a cytoplasmic enzyme interacting with transcription factor HNF1. EMBO J 1995, 14:2034-2042.
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A potential catalytic site revealed by the 1.7 a crystal structure of the aminoterminal signalling domain of Sonic hedgehog
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Hall TM, Porter JA, Beachy PA, Leahy DJ: A potential catalytic site revealed by the 1.7 A crystal structure of the aminoterminal signalling domain of Sonic hedgehog. Nature 1995, 378:212-216. The structure suggests the existence of potential hydrolytic activity in members of the hedgehog family, the primary signals expressed by certain embryonic patterning centres.
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Hall, T.M.1
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0029971584
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Crystal structure of the macrophage migration inhibitory factor from rat liver
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Suzuki M, Sugimoto H, Nakagawa A, Tanaka I, Nishihira J, Sakai M: Crystal structure of the macrophage migration inhibitory factor from rat liver. Nat Struct Biol 1996, 3:259-266. The paper reports the unexpected structural similarity of MIF to CHMI, a tautomerase [18••]. This similarity extends to the putative active site regions, suggesting a possible enzymatic activity for this lymphokine.
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The crystal structure of human glycosylation-inhibiting factor is a trimeric barrel with three 6-stranded β-sheets
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Kato Y, Muto T, Tomura T, Tsumura H, Wataru H, Mikayama T, Ishizaba K, Kuroki R: The crystal structure of human glycosylation-inhibiting factor is a trimeric barrel with three 6-stranded β-sheets. Proc Natl Acad Sci USA 1996, 93:3007-3010.
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0030060180
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1.6 Ȧ structure of nuclear transport factor 2 (NTF2)
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J Mol Biol
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Bullock, T.L.1
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0029041105
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Bycroft M, Grünert S, Murzin AG, Proctor M, St Johnston D: NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J 1995, 14:3563-3571. Staufen protein is required for the localization of maternal mRNAs to op-posite poles of the Drosophila egg. It contains five copies of the double stranded RNA binding motif. This paper reports the solution structure for the third motif.
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EMBO J
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Structure of the dsRNA-binding domain of e coli RNase III
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The crystal structure of the bacterial chaperonin GroEL at 2.8 Ȧ
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The crystal structure of the GroES co-chaperonin at 2.8 Ȧ resolution
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Three-dimensional structure of horse liver alcohol dehydrogenase at 2.4 Ȧ resolution
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Crystal structure of Escherichia coli quinone reductase complexed with NADPH
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A tale of two proteinases
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Carrel RW, Lesk AM: A tale of two proteinases. Nat Struct Biol 1994,1:492-494. This news and views article discusses the structural and evolutionary relationship between the chymotrypsin family of serine proteinases and the family of viral 3C cysteine proteinases, the prediction of which has been confirmed recently by the determination of the first two structures for the latter family.
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Crystal structure of the 205 proteasome from the archaeon T. acidophilum at 3.4 Ȧ resolution
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Structure of the multifunctional loops in the nonclassical ATP-binding fold of glutathione synthetase
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The crystal structure of succinyl-CoA synthetase from Escherichia coli at 2.5 Ȧ resolution
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Proc Natl Acad Sci USA
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Three-dimensional structure of p-cresol methylhydroxylase (Flavocytochrome c) from Pseudomonas putida at 3.0 Ȧ resolution
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