The X-ray Structure of trans-3-Chloroacrylic Acid Dehalogenase Reveals a Novel Hydration Mechanism in the Tautomerase Superfamily

Journal of Biological Chemistry

Volumn 279, Issue 12, 2004, Pages 11546-11552

  De Jong, René M ^a   Brugman, Wim ^a   Poelarends, Gerrit J ^b   Whitman, Christian P ^b   Dijkstra, Bauke W ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; ENZYMES; INORGANIC ACIDS; PLANTS (BOTANY); X RAY ANALYSIS;

NEMATODES; X-RAY STRUCTURES;

BIOCHEMISTRY;

3 CHLOROACRYLIC ACID DEHALOGENASE; 4 OXALOCROTONATE TAUTOMERASE; ARGININE; BACTERIAL ENZYME; CARBON; CARBOXYL GROUP; GLUTAMIC ACID; HYDROXYL GROUP; MALONIC ACID DERIVATIVE; PROLINE; UNCLASSIFIED DRUG; UNSATURATED FATTY ACID;

AGRICULTURE; ALKYLATION; ALPHA CHAIN; AMINO TERMINAL SEQUENCE; ARTICLE; BETA CHAIN; CATALYSIS; CHEMICAL BOND; CRYSTAL STRUCTURE; DECOMPOSITION; ENZYME ACTIVE SITE; ENZYME INACTIVATION; ENZYME STRUCTURE; HYDRATION; HYDROPHILICITY; HYDROPHOBICITY; MOLECULAR INTERACTION; NEMATODAL PLANT DISEASE; NEMATODE; NONHUMAN; POLARIZATION; PRIORITY JOURNAL; PROTEIN FAMILY; PROTON TRANSPORT; PSEUDOMONAS; PSEUDOMONAS PAVONACEAE;

BINDING SITES; CATALYSIS; HYDROLASES; MODELS, MOLECULAR; PROTEIN CONFORMATION; PSEUDOMONAS; WATER; X-RAY DIFFRACTION;

BACTERIA (MICROORGANISMS); NEMATODA; PSEUDOMONAS; PSEUDOMONAS PAVONACEAE;

EID: 1642483053     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M311966200     Document Type: Article

References (45)

1. Janssen, D. B., Oppentocht, J. E., and Poelarends, G. J. (2001) Curr. Opin. Biotechnol. 12, 254-258
2. Janssen, D. B., Oppentocht, J. E., and Poelarends, G. J. (2003) in Dehalogenation: Microbial Processes and Environmental Applications (Haggblom, M. M., Bossert, I. D., and Wulder, M. A., eds) pp. 207-226, Kluwer Academic Publishers, Dordrecht, The Netherlands
3. Verschueren, K. H., Seljée, F., Rozeboom, H. J., Kalk, K. H., and Dijkstra, B. W. (1993) Nature 363, 693-698
4. Ridder, I. S., Rozeboom, H. J., Kalk, K. H., Janssen, D. B., and Dijkstra, B. W. (1997) J. Biol. Chem. 272, 33015-33022
5. de Jong, R. M., Rozeboom, H. J., Kalk, K. H., Tang, L., Janssen, D. B., and Dijkstra, B. W. (2003) EMBO J. 22, 4933-4944
6. Neumann, A., Siebert, A., Trescher, T., Reinhardt, S., Wohlfarth, G., and Diekert, G. (2002) Arch. Microbiol. 177, 420-426
7. Kiefer, P. M., Jr., and Copley, S. D. (2002) Biochemistry 41, 1315-1322
8. Benning, M. M., Taylor, K. L., Lui, R. Q., Yang, G., Xiang, H., Wesenberg, G., Dunaway-Mariano, D., and Holden, H. M. (1996) Biochemistry 35, 8103-8109
9. van Hylckama Vlieg, J. E. T., and Janssen, D. B. (1992) Biodegradation 2, 139-150
10. Poelarends, G. J., Wilkens, M., Larkin, M. J., van Elsas, J. D., and Janssen, D. B. (1998) Appl. Env. Microbiol. 64, 2931-2936
11. Poelarends, G. J., Saunier, R., and Janssen, D. B. (2001) J. Bacteriol. 183, 4269-4277
12. Poelarends, G. J., Johnson, W. H., Jr., Murzin, A. G., and Whitman, C. P. (2003) J. Biol. Chem. 278, 48674-48683
13. Chen, L. H., Kenyon, G. L., Curtin, F., Harayama, S., Bembenek, M. E., Hajipour, G., and Whitman, C. P. (1992) J. Biol. Chem. 267, 17716-17721
14. Whitman, C. P. (2002) Arch. Biochem. Biophys. 402, 1-13
15. Subramanya, H. S., Roper, D. I., Dauter, Z., Dodson, E. J., Davies, G. J., Wilson, K. S., and Wigley, D. B. (1996) Biochemistry 35, 792-802
16. Murzin, A. G. (1996) Curr. Opin. Struct. Biol. 6, 386-394
17. Almrud, J. J., Kern, A. D., Wang, S. C., Czerwinski, R. M., Johnson, W. H., Jr., Murzin, A. G., Hackert, M. L., and Whitman, C. P. (2002) Biochemistry 41, 12010-12024
18. Stivers, J. T., Abeygunawardana, C., Mildvan, A. S., Hajipour, G., Whitman, C. P., and Chen, L. H. (1996) Biochemistry 35, 803-813
19. Stivers, J. T., Abeygunawardana, C., Mildvan, A. S., Hajipour, G., and Whitman, C. P. (1996) Biochemistry 35, 814-823
20. Czerwinski, R. M., Johnson, W. H., Jr., and Whitman, C. P. (1997) Biochemistry 36, 14551-14560
21. Harris, T. K., Czerwinski, R. M., Johnson, W. H., Jr., Legler, P. M., Abeygunawardana, C., Massiah, M. A., Stivers, J. T., Whitman, C. P., and Mildvan, A. S. (1999) Biochemistry 38, 12343-12357
22. Czerwinski, R. M., Harris, T. K., Johnson, W. H., Jr., Legler, P. M., Stivers, J. T., Mildvan, A. S., and Whitman, C. P. (1999) Biochemistry 38, 12358-12366
23. Czerwinski, R. M., Harris, T. K., Massiah, M. A., Mildvan, A. S., and Whitman, C. P. (2001) Biochemistry 40, 1984-1995
24. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene (Amst.) 77, 51-59
25. Wang, S. C., Person, M. D., Johnson, W. H., Jr., and Whitman, C. P. (2003) Biochemistry 42, 8762-8773
26. Strauss, F., Kollek, L., and Heyn, W. (1930) Chem. Ber. 63, 1868-1899
27. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
28. Navaza, J., and Saludjian, P. (1997) Methods Enzymol. 276, 581-594
29. Collaborative Computational Project, Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
30. Read, R. J. (1986) Acta Crystallogr. Sect. A 42, 140-149
31. Terwilliger, T. C. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1763-1775
32. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
33. Kleywegt, G. J., and Jones, T. A. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 1119-1131
34. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
35. Marletta, M. A., Cheung, Y.-F., and Walsh, C. (1982) Biochemistry 21, 2637-2644
36. Jencks, W. P. (1987) Catalysis in Chemistry and Enzymology, pp. 116-120, Dover Publications Inc., New York
37. Taylor, A. B., Czerwinski, R. M., Johnson, W. H., Jr., Whitman, C. P., and Hackert, M. L. (1998) Biochemistry 37, 14692-14700
38. Taylor, A. B., Johnson, W. H., Jr., Czerwinski, R. M., Li, H. S., Hackert, M. L., and Whitman, C. P. (1999) Biochemistry 38, 7444-7452
39. Bruice, P. Y. (2003) Organic chemistry, 4th Ed., pp. 670-688, Pearson Education Inc., Upper Saddle River, New Jersey
40. O'Brien, P. J., and Herschlag, D. (1999) Chem. Biol. 6, R91-R105
41. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
42. Ikeda, M., and Nakagawa, S. (2003) Appl. Microbiol. Biotechnol. 62, 99-109
43. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
44. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
45. Wang, S. C., Johnson, W. H., Jr., and Whitman, C. P. (2003) J. Am. Chem. Soc. 125, 14282-14283