-
1
-
-
0033954256
-
The Protein Data Bank
-
10.1093/nar/28.1.235, 102472, 10592235
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000, 28(1):235-242. 10.1093/nar/28.1.235, 102472, 10592235.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
2
-
-
0026742978
-
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
-
10.1016/S0006-3495(92)81649-1, 1262208, 1384741
-
Berman HM, Olson WK, Beveridge DL, Westbrook J, Gelbin A, Demeny T, Hsieh SH, Srinivasan AR, Schneider B. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophys J 1992, 63(3):751-759. 10.1016/S0006-3495(92)81649-1, 1262208, 1384741.
-
(1992)
Biophys J
, vol.63
, Issue.3
, pp. 751-759
-
-
Berman, H.M.1
Olson, W.K.2
Beveridge, D.L.3
Westbrook, J.4
Gelbin, A.5
Demeny, T.6
Hsieh, S.H.7
Srinivasan, A.R.8
Schneider, B.9
-
3
-
-
0035976713
-
Do water molecules mediate protein-DNA recognition?
-
10.1006/jmbi.2001.5154, 11846571
-
Reddy CK, Das A, Jayaram B. Do water molecules mediate protein-DNA recognition?. J Mol Biol 2001, 314(3):619-632. 10.1006/jmbi.2001.5154, 11846571.
-
(2001)
J Mol Biol
, vol.314
, Issue.3
, pp. 619-632
-
-
Reddy, C.K.1
Das, A.2
Jayaram, B.3
-
4
-
-
0036074510
-
Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity
-
10.1016/S0022-2836(02)00571-5, 12126620
-
Luscombe NM, Thornton JM. Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity. J Mol Biol 2002, 320(5):991-1009. 10.1016/S0022-2836(02)00571-5, 12126620.
-
(2002)
J Mol Biol
, vol.320
, Issue.5
, pp. 991-1009
-
-
Luscombe, N.M.1
Thornton, J.M.2
-
5
-
-
0035393302
-
Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level
-
10.1093/nar/29.13.2860, 55782, 11433033
-
Luscombe NM, Laskowski RA, Thornton JM. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res 2001, 29(13):2860-2874. 10.1093/nar/29.13.2860, 55782, 11433033.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.13
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
6
-
-
34547852238
-
Prediction of DNA-binding residues from sequence
-
10.1093/bioinformatics/btm174, 17646316
-
Ofran Y, Mysore V, Rost B. Prediction of DNA-binding residues from sequence. Bioinformatics 2007, 23(13):i347-353. 10.1093/bioinformatics/btm174, 17646316.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Ofran, Y.1
Mysore, V.2
Rost, B.3
-
7
-
-
34047094501
-
DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins
-
10.1093/bioinformatics/btl672, 17237068
-
Hwang S, Gou Z, Kuznetsov IB. DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins. Bioinformatics 2007, 23(5):634-636. 10.1093/bioinformatics/btl672, 17237068.
-
(2007)
Bioinformatics
, vol.23
, Issue.5
, pp. 634-636
-
-
Hwang, S.1
Gou, Z.2
Kuznetsov, I.B.3
-
8
-
-
33746495377
-
Predicting DNA-binding sites of proteins from amino acid sequence
-
10.1186/1471-2105-7-262, 1534068, 16712732
-
Yan C, Terribilini M, Wu F, Jernigan RL, Dobbs D, Honavar V. Predicting DNA-binding sites of proteins from amino acid sequence. BMC Bioinformatics 2006, 7:262. 10.1186/1471-2105-7-262, 1534068, 16712732.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 262
-
-
Yan, C.1
Terribilini, M.2
Wu, F.3
Jernigan, R.L.4
Dobbs, D.5
Honavar, V.6
-
9
-
-
33846469006
-
Prediction of DNA-binding residues from sequence features
-
10.1142/S0219720006002387, 17245807
-
Wang L, Brown SJ. Prediction of DNA-binding residues from sequence features. J Bioinform Comput Biol 2006, 4(6):1141-1158. 10.1142/S0219720006002387, 17245807.
-
(2006)
J Bioinform Comput Biol
, vol.4
, Issue.6
, pp. 1141-1158
-
-
Wang, L.1
Brown, S.J.2
-
10
-
-
25444524842
-
PSSM-based prediction of DNA binding sites in proteins
-
10.1186/1471-2105-6-33, 550660, 15720719
-
Ahmad S, Sarai A. PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 2005, 6:33. 10.1186/1471-2105-6-33, 550660, 15720719.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 33
-
-
Ahmad, S.1
Sarai, A.2
-
11
-
-
58049220320
-
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature
-
10.1093/bioinformatics/btn583, 2638931, 19008251
-
Wu J, Liu H, Duan X, Ding Y, Wu H, Bai Y, Sun X. Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. Bioinformatics 2009, 25(1):30-35. 10.1093/bioinformatics/btn583, 2638931, 19008251.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 30-35
-
-
Wu, J.1
Liu, H.2
Duan, X.3
Ding, Y.4
Wu, H.5
Bai, Y.6
Sun, X.7
-
12
-
-
33846900499
-
Structure Based Prediction of Binding Residues on DNA-binding Proteins
-
Bhardwaj N, Langlois R, Zhao G, Lu H. Structure Based Prediction of Binding Residues on DNA-binding Proteins. Conf Proc IEEE Eng Med Biol Soc 2005, 3:2611-2614.
-
(2005)
Conf Proc IEEE Eng Med Biol Soc
, vol.3
, pp. 2611-2614
-
-
Bhardwaj, N.1
Langlois, R.2
Zhao, G.3
Lu, H.4
-
13
-
-
2542557409
-
Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces
-
10.1002/prot.20111, 15146487
-
Tsuchiya Y, Kinoshita K, Nakamura H. Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces. Proteins 2004, 55(4):885-894. 10.1002/prot.20111, 15146487.
-
(2004)
Proteins
, vol.55
, Issue.4
, pp. 885-894
-
-
Tsuchiya, Y.1
Kinoshita, K.2
Nakamura, H.3
-
14
-
-
1542400269
-
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
-
10.1093/bioinformatics/btg432, 14990443
-
Ahmad S, Gromiha MM, Sarai A. Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinformatics 2004, 20(4):477-486. 10.1093/bioinformatics/btg432, 14990443.
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 477-486
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
15
-
-
0346258292
-
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
-
10.1093/nar/gkg922, 291864, 14654694
-
Jones S, Shanahan HP, Berman HM, Thornton JM. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Res 2003, 31(24):7189-7198. 10.1093/nar/gkg922, 291864, 14654694.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.24
, pp. 7189-7198
-
-
Jones, S.1
Shanahan, H.P.2
Berman, H.M.3
Thornton, J.M.4
-
16
-
-
33847122913
-
Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions
-
10.1016/j.febslet.2007.01.086, 1993824, 17316627
-
Bhardwaj N, Lu H. Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions. FEBS Lett 2007, 581(5):1058-1066. 10.1016/j.febslet.2007.01.086, 1993824, 17316627.
-
(2007)
FEBS Lett
, vol.581
, Issue.5
, pp. 1058-1066
-
-
Bhardwaj, N.1
Lu, H.2
-
17
-
-
34247250713
-
Predicting DNA-binding amino acid residues from electrostatic stabilization upon mutation to Asp/Glu and evolutionary conservation
-
10.1002/prot.21366, 17340633
-
Chen YC, Wu CY, Lim C. Predicting DNA-binding amino acid residues from electrostatic stabilization upon mutation to Asp/Glu and evolutionary conservation. Proteins 2007, 67(3):671-680. 10.1002/prot.21366, 17340633.
-
(2007)
Proteins
, vol.67
, Issue.3
, pp. 671-680
-
-
Chen, Y.C.1
Wu, C.Y.2
Lim, C.3
-
18
-
-
67849090551
-
ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors
-
to appear., 2703882, 19483101, Web Server
-
Chu WY, Huang YF, Huang CC, Cheng YS, Huang CK, Oyang YJ. ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors. Nucleic Acids Res 2009, (Web Server). to appear., 2703882, 19483101.
-
(2009)
Nucleic Acids Res
-
-
Chu, W.Y.1
Huang, Y.F.2
Huang, C.C.3
Cheng, Y.S.4
Huang, C.K.5
Oyang, Y.J.6
-
19
-
-
0030035436
-
Multiple steps in the regulation of transcription-factor level and activity
-
1217492, 8713055
-
Calkhoven CF, Ab G. Multiple steps in the regulation of transcription-factor level and activity. Biochem J 1996, 317(Pt 2):329-342. 1217492, 8713055.
-
(1996)
Biochem J
, vol.317
, Issue.PART 2
, pp. 329-342
-
-
Calkhoven, C.F.1
Ab, G.2
-
20
-
-
0026682657
-
Transcription factors: structural families and principles of DNA recognition
-
10.1146/annurev.bi.61.070192.005201, 1497306
-
Pabo CO, Sauer RT. Transcription factors: structural families and principles of DNA recognition. Annu Rev Biochem 1992, 61:1053-1095. 10.1146/annurev.bi.61.070192.005201, 1497306.
-
(1992)
Annu Rev Biochem
, vol.61
, pp. 1053-1095
-
-
Pabo, C.O.1
Sauer, R.T.2
-
21
-
-
0031432471
-
Transcription factors: an overview
-
10.1016/S1357-2725(97)00085-X, 9570129
-
Latchman DS. Transcription factors: an overview. Int J Biochem Cell Biol 1997, 29(12):1305-1312. 10.1016/S1357-2725(97)00085-X, 9570129.
-
(1997)
Int J Biochem Cell Biol
, vol.29
, Issue.12
, pp. 1305-1312
-
-
Latchman, D.S.1
-
22
-
-
0027360972
-
Transcription factors: an overview
-
Latchman DS. Transcription factors: an overview. Int J Exp Pathol 1993, 74(5):417-422.
-
(1993)
Int J Exp Pathol
, vol.74
, Issue.5
, pp. 417-422
-
-
Latchman, D.S.1
-
23
-
-
33744961763
-
Intrinsic disorder in transcription factors
-
10.1021/bi0602718, 2538555, 16734424
-
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. Intrinsic disorder in transcription factors. Biochemistry 2006, 45(22):6873-6888. 10.1021/bi0602718, 2538555, 16734424.
-
(2006)
Biochemistry
, vol.45
, Issue.22
, pp. 6873-6888
-
-
Liu, J.1
Perumal, N.B.2
Oldfield, C.J.3
Su, E.W.4
Uversky, V.N.5
Dunker, A.K.6
-
24
-
-
3142657230
-
Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes
-
10.1126/science.1097064, 15256668
-
Kalodimos CG, Biris N, Bonvin AM, Levandoski MM, Guennuegues M, Boelens R, Kaptein R. Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes. Science 2004, 305(5682):386-389. 10.1126/science.1097064, 15256668.
-
(2004)
Science
, vol.305
, Issue.5682
, pp. 386-389
-
-
Kalodimos, C.G.1
Biris, N.2
Bonvin, A.M.3
Levandoski, M.M.4
Guennuegues, M.5
Boelens, R.6
Kaptein, R.7
-
25
-
-
0016175370
-
Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice
-
10.1016/0022-2836(74)90031-X, 4416620
-
McGhee JD, von Hippel PH. Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice. J Mol Biol 1974, 86(2):469-489. 10.1016/0022-2836(74)90031-X, 4416620.
-
(1974)
J Mol Biol
, vol.86
, Issue.2
, pp. 469-489
-
-
McGhee, J.D.1
von Hippel, P.H.2
-
26
-
-
0015465772
-
DNA-protein interactions
-
10.1146/annurev.bi.41.070172.001311, 4570958
-
Von Hippel PH, McGhee JD. DNA-protein interactions. Annu Rev Biochem 1972, 41(10):231-300. 10.1146/annurev.bi.41.070172.001311, 4570958.
-
(1972)
Annu Rev Biochem
, vol.41
, Issue.10
, pp. 231-300
-
-
Von Hippel, P.H.1
McGhee, J.D.2
-
27
-
-
0028210087
-
Protein-DNA recognition: new perspectives and underlying themes
-
10.1126/science.8303292, 8303292
-
von Hippel PH. Protein-DNA recognition: new perspectives and underlying themes. Science 1994, 263(5148):769-770. 10.1126/science.8303292, 8303292.
-
(1994)
Science
, vol.263
, Issue.5148
, pp. 769-770
-
-
von Hippel, P.H.1
-
28
-
-
0003409371
-
Concepts in Biochemistry: Structure Tutorials
-
Wiley, 3
-
Boyer RF. Concepts in Biochemistry: Structure Tutorials. Concepts in Biochemistry 2005, 736. Wiley, 3.
-
(2005)
Concepts in Biochemistry
, pp. 736
-
-
Boyer, R.F.1
-
29
-
-
0037418657
-
Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains
-
10.1016/S0022-2836(03)00091-3, 12654263
-
Cheng AC, Chen WW, Fuhrmann CN, Frankel AD. Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains. J Mol Biol 2003, 327(4):781-796. 10.1016/S0022-2836(03)00091-3, 12654263.
-
(2003)
J Mol Biol
, vol.327
, Issue.4
, pp. 781-796
-
-
Cheng, A.C.1
Chen, W.W.2
Fuhrmann, C.N.3
Frankel, A.D.4
-
30
-
-
0033647653
-
An overview of the structures of protein-DNA complexes
-
10.1186/gb-2000-1-1-reviews001, 138832, 11104519
-
Luscombe NM, Austin SE, Berman HM, Thornton JM. An overview of the structures of protein-DNA complexes. Genome Biol 2000, 1(1):REVIEWS001. 10.1186/gb-2000-1-1-reviews001, 138832, 11104519.
-
(2000)
Genome Biol
, vol.1
, Issue.1
-
-
Luscombe, N.M.1
Austin, S.E.2
Berman, H.M.3
Thornton, J.M.4
-
31
-
-
0025995844
-
A structural taxonomy of DNA-binding domains
-
10.1038/353715a0, 1944532
-
Harrison SC. A structural taxonomy of DNA-binding domains. Nature 1991, 353(6346):715-719. 10.1038/353715a0, 1944532.
-
(1991)
Nature
, vol.353
, Issue.6346
, pp. 715-719
-
-
Harrison, S.C.1
-
32
-
-
0002359915
-
DNA-protein interaction at high resolution
-
New York: Oxford University Press, Lilley DMJ
-
Luisi B. DNA-protein interaction at high resolution. DNA-Protein Structural Interactions 1995, 1-48. New York: Oxford University Press, Lilley DMJ.
-
(1995)
DNA-Protein Structural Interactions
, pp. 1-48
-
-
Luisi, B.1
-
33
-
-
33748290192
-
Classification of protein-DNA complexes based on structural descriptors
-
10.1016/j.str.2006.06.018, 16962967
-
Prabakaran P, Siebers JG, Ahmad S, Gromiha MM, Singarayan MG, Sarai A. Classification of protein-DNA complexes based on structural descriptors. Structure 2006, 14(9):1355-1367. 10.1016/j.str.2006.06.018, 16962967.
-
(2006)
Structure
, vol.14
, Issue.9
, pp. 1355-1367
-
-
Prabakaran, P.1
Siebers, J.G.2
Ahmad, S.3
Gromiha, M.M.4
Singarayan, M.G.5
Sarai, A.6
-
34
-
-
0030595337
-
Structural classification of HTH DNA-binding domains and protein-DNA interaction modes
-
10.1006/jmbi.1996.0514, 8831795
-
Wintjens R, Rooman M. Structural classification of HTH DNA-binding domains and protein-DNA interaction modes. J Mol Biol 1996, 262(2):294-313. 10.1006/jmbi.1996.0514, 8831795.
-
(1996)
J Mol Biol
, vol.262
, Issue.2
, pp. 294-313
-
-
Wintjens, R.1
Rooman, M.2
-
35
-
-
0016848210
-
[Pressure-volume relationship. Aortic compliance - with special reference to an observation in various stress conditions]
-
Yaginuma T. [Pressure-volume relationship. Aortic compliance - with special reference to an observation in various stress conditions]. Nippon Rinsho 1975, 33(7):2295-2303.
-
(1975)
Nippon Rinsho
, vol.33
, Issue.7
, pp. 2295-2303
-
-
Yaginuma, T.1
-
36
-
-
1542580471
-
From transcription factors to designed sequence-specific DNA-binding peptides
-
10.1039/b206274g, 14671789
-
Vazquez ME, Caamano AM, Mascarenas JL. From transcription factors to designed sequence-specific DNA-binding peptides. Chem Soc Rev 2003, 32(6):338-349. 10.1039/b206274g, 14671789.
-
(2003)
Chem Soc Rev
, vol.32
, Issue.6
, pp. 338-349
-
-
Vazquez, M.E.1
Caamano, A.M.2
Mascarenas, J.L.3
-
37
-
-
11844279783
-
Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity
-
10.1016/j.jmb.2004.11.010, 15644202
-
Siggers TW, Silkov A, Honig B. Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity. J Mol Biol 2005, 345(5):1027-1045. 10.1016/j.jmb.2004.11.010, 15644202.
-
(2005)
J Mol Biol
, vol.345
, Issue.5
, pp. 1027-1045
-
-
Siggers, T.W.1
Silkov, A.2
Honig, B.3
-
38
-
-
0141630791
-
On the specificity of DNA-protein interactions
-
10.1073/pnas.83.6.1608, 323132, 3456604
-
von Hippel PH, Berg OG. On the specificity of DNA-protein interactions. Proc Natl Acad Sci USA 1986, 83(6):1608-1612. 10.1073/pnas.83.6.1608, 323132, 3456604.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, Issue.6
, pp. 1608-1612
-
-
von Hippel, P.H.1
Berg, O.G.2
-
39
-
-
0003710380
-
LIBSVM: a library for support vector machines
-
Chang C-C, Lin C-J. LIBSVM: a library for support vector machines. 2001, , http://www.csie.ntu.edu.tw/~cjlin/libsvm
-
(2001)
-
-
Chang, C.-.C.1
Lin, C.-.J.2
-
40
-
-
33747828217
-
BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences
-
10.1093/nar/gkl298, 1538853, 16845003, Web Server
-
Wang L, Brown SJ. BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Res 2006, (34 Web Server):W243-248. 10.1093/nar/gkl298, 1538853, 16845003.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Wang, L.1
Brown, S.J.2
-
41
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25-29. 10.1038/75556, 10802651.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
42
-
-
33846803179
-
DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
-
10.1093/nar/gkm008, 1865077, 17284455
-
Tjong H, Zhou HX. DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces. Nucleic Acids Res 2007, 35(5):1465-1477. 10.1093/nar/gkm008, 1865077, 17284455.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.5
, pp. 1465-1477
-
-
Tjong, H.1
Zhou, H.X.2
-
43
-
-
33748849648
-
Machine learning in bioinformatics
-
10.1093/bib/bbk007, 16761367
-
Larranaga P, Calvo B, Santana R, Bielza C, Galdiano J, Inza I, Lozano JA, Armananzas R, Santafe G, Perez A. Machine learning in bioinformatics. Brief Bioinform 2006, 7(1):86-112. 10.1093/bib/bbk007, 16761367.
-
(2006)
Brief Bioinform
, vol.7
, Issue.1
, pp. 86-112
-
-
Larranaga, P.1
Calvo, B.2
Santana, R.3
Bielza, C.4
Galdiano, J.5
Inza, I.6
Lozano, J.A.7
Armananzas, R.8
Santafe, G.9
Perez, A.10
-
44
-
-
33746747476
-
Machine learning in bioinformatics: a brief survey and recommendations for practitioners
-
10.1016/j.compbiomed.2005.09.002, 16226240
-
Bhaskar H, Hoyle DC, Singh S. Machine learning in bioinformatics: a brief survey and recommendations for practitioners. Comput Biol Med 2006, 36(10):1104-1125. 10.1016/j.compbiomed.2005.09.002, 16226240.
-
(2006)
Comput Biol Med
, vol.36
, Issue.10
, pp. 1104-1125
-
-
Bhaskar, H.1
Hoyle, D.C.2
Singh, S.3
-
45
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
46
-
-
38549146894
-
The Pfam protein families database
-
2238907, 18039703, Database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Res 2008, (36 Database):D281-288. 2238907, 18039703.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.10
-
47
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
10.1002/bip.360221211, 6667333
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22(12):2577-2637. 10.1002/bip.360221211, 6667333.
-
(1983)
Biopolymers
, vol.22
, Issue.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
48
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
10.1093/bioinformatics/16.4.404, 10869041
-
McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics 2000, 16(4):404-405. 10.1093/bioinformatics/16.4.404, 10869041.
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
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