-
1
-
-
0036303121
-
NETASA: Neural network based prediction of solvent accessibility
-
Ahmad,S. and Gromiha,M.M. (2002) NETASA: Neural network based prediction of solvent accessibility. Bioinformatics, 18, 819-24.
-
(2002)
Bioinformatics
, vol.18
, pp. 819-824
-
-
Ahmad, S.1
Gromiha, M.M.2
-
2
-
-
0037340834
-
Real value prediction of solvent accessibility from amino-acid sequence
-
Ahmad,S., Gromiha,M.M. and Sarai,A. (2003) Real value prediction of solvent accessibility from amino-acid sequence. Proteins, 50, 629-635.
-
(2003)
Proteins
, vol.50
, pp. 629-635
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Thomas,L.M., Alejandro,A.S., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs, Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Thomas, L.M.2
Alejandro, A.S.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.C., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31, 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
-
5
-
-
0034663597
-
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff,J.A. and Barton,G.J. (2000) Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins, 40, 502-511.
-
(2000)
Proteins
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
6
-
-
0032773941
-
Role of structural and sequence information in the prediction of protein stability changes: Comparison between buried and partially buried mutations
-
Gromiha,M.M., Oobatake,M., Kono,H., Uedaira,H. and Sarai,A. (1999) Role of structural and sequence information in the prediction of protein stability changes: Comparison between buried and partially buried mutations. Protein Eng., 12, 549-555.
-
(1999)
Protein Eng.
, vol.12
, pp. 549-555
-
-
Gromiha, M.M.1
Oobatake, M.2
Kono, H.3
Uedaira, H.4
Sarai, A.5
-
7
-
-
0035967862
-
Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: Application of long-range order to folding rate prediction
-
Gromiha,M.M. and Selvaraj,S. (2001) Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: Application of long-range order to folding rate prediction. J. Mol. Biol., 310, 27-32.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 27-32
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
8
-
-
0031829372
-
Removing near-neighbour redundancy from large protein sequence collections
-
Holm,L. and Sander,C. (1998) Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics, 14, 423-429.
-
(1998)
Bioinformatics
, vol.14
, pp. 423-429
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
10
-
-
0033120215
-
Structure-based prediction of DNA target sites by regulatory proteins
-
Kono,H. and Sarai,A. (1999) Structure-based prediction of DNA target sites by regulatory proteins. Proteins, 35, 114-131.
-
(1999)
Proteins
, vol.35
, pp. 114-131
-
-
Kono, H.1
Sarai, A.2
-
11
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein database
-
Li,W, Jaroszewski,L. and Godzik,A. (2001) Clustering of highly homologous sequences to reduce the size of large protein database. Bioinformatics, 17, 282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
12
-
-
0036074510
-
Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity
-
Luscombe,N.M. and Thornton,J.M. (2002) Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity. J. Mol. Biol., 320, 991-1009.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 991-1009
-
-
Luscombe, N.M.1
Thornton, J.M.2
-
13
-
-
0032524713
-
Quantitative parameters for amino acid-base interaction: Implications for prediction of protein-DNA binding sites
-
Mandel-Gutfrend,Y and Margalit,H. (1998) Quantitative parameters for amino acid-base interaction: Implications for prediction of protein-DNA binding sites. Nucleic Acids Res., 26, 2306-2312.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2306-2312
-
-
Mandel-Gutfrend, Y.1
Margalit, H.2
-
14
-
-
0032540011
-
A role for CH ⋯ O interactions in protein-DNA recognition
-
Mandel-Gutfrend,Y, Margalit,H., Jernigan,R.L. and Zhurkin,V.B. (1998) A role for CH ⋯ O interactions in protein-DNA recognition. J. Mol. Biol., 277, 1129-1140.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1129-1140
-
-
Mandel-Gutfrend, Y.1
Margalit, H.2
Jernigan, R.L.3
Zhurkin, V.B.4
-
15
-
-
0033573827
-
Structural features of protein-nucleic acid recognition sites
-
Nadassy,K., Wodak,S.J. and Janin,J. (1999) Structural features of protein-nucleic acid recognition sites. Biochemistry, 38, 1999-2017.
-
(1999)
Biochemistry
, vol.38
, pp. 1999-2017
-
-
Nadassy, K.1
Wodak, S.J.2
Janin, J.3
-
16
-
-
0034682882
-
Geometric analysis and comparison of protein-DNA interfaces: Why is there no simple code for recognition?
-
Pabo,C.O. and Nekludova,L. (2000) Geometric analysis and comparison of protein-DNA interfaces: Why is there no simple code for recognition? J. Mol. Biol., 301, 597-624.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 597-624
-
-
Pabo, C.O.1
Nekludova, L.2
-
17
-
-
0000127073
-
Sequence-specific recognition of double helical nucleic acids by proteins
-
Seeman,N.C., Rosenberg,J.M. and Rich,A. (1976) Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl Acad. Sci. USA, 73, 804-808.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 804-808
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Rich, A.3
-
18
-
-
0036412071
-
Specificity of protein-DNA recognition revealed by structure-based potentials: Symmetric/asymmetric and cognate/non-cognate binding
-
Selvaraj,S., Kono,H. and Sarai,A, (2002) Specificity of protein-DNA recognition revealed by structure-based potentials: symmetric/asymmetric and cognate/non-cognate binding. J. Mol. Biol., 322, 907-915.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 907-915
-
-
Selvaraj, S.1
Kono, H.2
Sarai, A.3
|