-
1
-
-
34249732138
-
A mitotic kinase TOPK enhances Cdk1/cyclin B1-dependent phosphorylation of PRC1 and promotes cytokinesis
-
Abe Y, Takeuchi T, Kagawa-Miki L, Ueda N, Shigemoto K, YasukawaM, Kito K (2007) A mitotic kinase TOPK enhances Cdk1/cyclin B1-dependent phosphorylation of PRC1 and promotes cytokinesis. J Mol Biol 370: 231-245
-
(2007)
J Mol Biol
, vol.370
, pp. 231-245
-
-
Abe, Y.1
Takeuchi, T.2
Kagawa-Miki, L.3
Ueda, N.4
Shigemoto, K.5
Yasukawa, M.6
Kito, K.7
-
2
-
-
34547602163
-
GeneTrail-advanced gene set enrichment analysis
-
Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Muller R, Meese E, Lenhof HP (2007) GeneTrail-advanced gene set enrichment analysis. Nucleic Acids Res 35: W186-W192
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Backes, C.1
Keller, A.2
Kuentzer, J.3
Kneissl, B.4
Comtesse, N.5
Elnakady, Y.A.6
Muller, R.7
Meese, E.8
Lenhof, H.P.9
-
3
-
-
59549101081
-
RHVDM: An R package to predict the activity and targets of a transcription factor
-
Barenco M, Papouli E, Shah S, Brewer D, Miller CJ, Hubank M (2009) rHVDM: an R package to predict the activity and targets of a transcription factor. Bioinformatics 25: 419-420
-
(2009)
Bioinformatics
, vol.25
, pp. 419-420
-
-
Barenco, M.1
Papouli, E.2
Shah, S.3
Brewer, D.4
Miller, C.J.5
Hubank, M.6
-
4
-
-
33745038921
-
Ranked prediction of p53 targets using hidden variable dynamic modeling
-
Barenco M, Tomescu D, Brewer D, Callard R, Stark J, HubankM(2006) Ranked prediction of p53 targets using hidden variable dynamic modeling. Genome Biol 7: R25
-
(2006)
Genome Biol
, vol.7
-
-
Barenco, M.1
Tomescu, D.2
Brewer, D.3
Callard, R.4
Stark, J.5
Hubank, M.6
-
5
-
-
0029774760
-
Characterisation of human cyclin G1 and G2: DNA damage inducible genes
-
Bates S, Rowan S, Vousden KH (1996) Characterisation of human cyclin G1 and G2: DNA damage inducible genes. Oncogene 13: 1103-1109
-
(1996)
Oncogene
, vol.13
, pp. 1103-1109
-
-
Bates, S.1
Rowan, S.2
Vousden, K.H.3
-
6
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 57: 289-300
-
(1995)
J R Stat Soc Series B Stat Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
0028238202
-
Human RelB (I-Rel) functions as a kappa B site-dependent transactivating member of the family of Rel-related proteins
-
Bours V, Azarenko V, Dejardin E, Siebenlist U (1994) Human RelB (I-Rel) functions as a kappa B site-dependent transactivating member of the family of Rel-related proteins. Oncogene 9: 1699-1702
-
(1994)
Oncogene
, vol.9
, pp. 1699-1702
-
-
Bours, V.1
Azarenko, V.2
Dejardin, E.3
Siebenlist, U.4
-
8
-
-
84976668743
-
Finding all cliques of an undirected graph
-
Bron C, Kerbosch J (1973) Finding all cliques of an undirected graph. Commun ACM 16: 575-577
-
(1973)
Commun ACM
, vol.16
, pp. 575-577
-
-
Bron, C.1
Kerbosch, J.2
-
9
-
-
0027462682
-
Mutual regulation of the transcriptional activator NF-kappa B and its inhibitor, i kappa B-alpha
-
Brown K, Park S, Kanno T, Franzoso G, Siebenlist U (1993) Mutual regulation of the transcriptional activator NF-kappa B and its inhibitor, I kappa B-alpha. Proc Natl Acad Sci USA 90: 2532-2536
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 2532-2536
-
-
Brown, K.1
Park, S.2
Kanno, T.3
Franzoso, G.4
Siebenlist, U.5
-
10
-
-
63249114107
-
Systems biology strikes gold
-
Camacho DM, Collins JJ (2009) Systems biology strikes gold. Cell 137: 24-26
-
(2009)
Cell
, vol.137
, pp. 24-26
-
-
Camacho, D.M.1
Collins, J.J.2
-
11
-
-
65349180167
-
Maximal extraction of biological information from genetic interaction data
-
CarterGW, Galas DJ, Galitski T (2009) Maximal extraction of biological information from genetic interaction data. PLoS Comput Biol 5: e1000347
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Carter Gw Galas, D.J.1
Galitski, T.2
-
12
-
-
0031298114
-
Expression of the leukocyte early activation antigen CD69 is regulated by the transcription factor AP-1
-
Castellanos MC, Munoz C, Montoya MC, Lara-Pezzi E, Lopez-Cabrera M, de Landazuri MO (1997) Expression of the leukocyte early activation antigen CD69 is regulated by the transcription factor AP-1. J Immunol 159: 5463-5473
-
(1997)
J Immunol
, vol.159
, pp. 5463-5473
-
-
Castellanos, M.C.1
Munoz, C.2
Montoya, M.C.3
Lara-Pezzi, E.4
Lopez-Cabrera, M.5
De Landazuri, M.O.6
-
13
-
-
33746353952
-
Applying dynamic Bayesian networks to perturbed gene expression data
-
Dojer N, Gambin A, Mizera A, Wilczynski B, Tiuryn J (2006) Applying dynamic Bayesian networks to perturbed gene expression data. BMC Bioinformatics 7: 249
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 249
-
-
Dojer, N.1
Gambin, A.2
Mizera, A.3
Wilczynski, B.4
Tiuryn, J.5
-
14
-
-
54049118008
-
Cell cycle dependent degradation of MCAK: Evidence against a role in anaphase chromosome movement
-
Ganguly A, Bhattacharya R, Cabral F (2008) Cell cycle dependent degradation of MCAK: evidence against a role in anaphase chromosome movement. Cell Cycle 7: 3187-3193
-
(2008)
Cell Cycle
, vol.7
, pp. 3187-3193
-
-
Ganguly, A.1
Bhattacharya, R.2
Cabral, F.3
-
15
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G et al (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
more..
-
16
-
-
0036401566
-
Intracellular localization and transcriptional regulation of tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4)
-
Glauner H, Siegmund D, Motejadded H, Scheurich P, Henkler F, Janssen O, Wajant H (2002) Intracellular localization and transcriptional regulation of tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4). Eur J Biochem 269: 4819-4829
-
(2002)
Eur J Biochem
, vol.269
, pp. 4819-4829
-
-
Glauner, H.1
Siegmund, D.2
Motejadded, H.3
Scheurich, P.4
Henkler, F.5
Janssen, O.6
Wajant, H.7
-
17
-
-
8844285956
-
Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress
-
Hayakawa J, Mittal S, Wang Y, Korkmaz KS, Adamson E, English C, Ohmichi M, McClelland M, Mercola D (2004) Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Mol Cell 16: 521-535
-
(2004)
Mol Cell
, vol.16
, pp. 521-535
-
-
Hayakawa, J.1
Mittal, S.2
Wang, Y.3
Korkmaz, K.S.4
Adamson, E.5
English, C.6
Ohmichi, M.7
McClelland, M.8
Mercola, D.9
-
18
-
-
0344464762
-
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
-
Husmeier D (2003) Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics 19: 2271-2282
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
-
19
-
-
33846107777
-
TRED: A transcriptional regulatory element database, new entries and other development
-
Jiang C, Xuan Z, Zhao F, Zhang MQ (2007) TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Res 35: D137-D140
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Jiang, C.1
Xuan, Z.2
Zhao, F.3
Zhang, M.Q.4
-
20
-
-
34248210257
-
The direct p53 target gene, FLJ11259/DRAM, is a member of a novel family of transmembrane proteins
-
Kerley-Hamilton JS, Pike AM, Hutchinson JA, Freemantle SJ, Spinella MJ (2007) The direct p53 target gene, FLJ11259/DRAM, is a member of a novel family of transmembrane proteins. Biochim Biophys Acta 1769: 209-219
-
(2007)
Biochim Biophys Acta
, vol.1769
, pp. 209-219
-
-
Kerley-Hamilton, J.S.1
Pike, A.M.2
Hutchinson, J.A.3
Freemantle, S.J.4
Spinella, M.J.5
-
21
-
-
0031566010
-
Cloning and expression of human mitotic centromere-associated kinesin gene
-
Kim IG, Jun DY, Sohn U, Kim YH (1997) Cloning and expression of human mitotic centromere-associated kinesin gene. Biochim Biophys Acta 1359: 181-186
-
(1997)
Biochim Biophys Acta
, vol.1359
, pp. 181-186
-
-
Kim, I.G.1
Jun, D.Y.2
Sohn, U.3
Kim, Y.H.4
-
22
-
-
5344281163
-
Phosphatidic acid and tumor necrosis factor-alpha induce the expression of CD83 through mitogen activated protein kinase pathway in a CD34+ hematopoietic progenitor cell line, KG1
-
Kim JW, Park HY, Lee MJ, Jang MJ, Lee SY, Park YM, Son DH, Chang YC, Bae YS, Kwak JY (2004) Phosphatidic acid and tumor necrosis factor-alpha induce the expression of CD83 through mitogen activated protein kinase pathway in a CD34+ hematopoietic progenitor cell line, KG1. Int Immunopharmacol 4: 1603-1613
-
(2004)
Int Immunopharmacol
, vol.4
, pp. 1603-1613
-
-
Kim, J.W.1
Park, H.Y.2
Lee, M.J.3
Jang, M.J.4
Lee, S.Y.5
Park, Y.M.6
Son, D.H.7
Chang, Y.C.8
Bae, Y.S.9
Kwak, J.Y.10
-
23
-
-
0026699666
-
Transcriptional activation of the tumor necrosis factor alpha-inducible zinc finger protein, A20, is mediated by kappa B elements
-
Krikos A, Laherty CD, Dixit VM (1992) Transcriptional activation of the tumor necrosis factor alpha-inducible zinc finger protein, A20, is mediated by kappa B elements. J Biol Chem 267: 17971-17976
-
(1992)
J Biol Chem
, vol.267
, pp. 17971-17976
-
-
Krikos, A.1
Laherty, C.D.2
Dixit, V.M.3
-
24
-
-
0033621839
-
NFkappaB mediates apoptosis through transcriptional activation of Fas (CD95) in adenoviral hepatitis
-
Kuhnel F, Zender L, Paul Y, Tietze MK, Trautwein C, Manns M, Kubicka S (2000) NFkappaB mediates apoptosis through transcriptional activation of Fas (CD95) in adenoviral hepatitis. J Biol Chem 275: 6421-6427
-
(2000)
J Biol Chem
, vol.275
, pp. 6421-6427
-
-
Kuhnel, F.1
Zender, L.2
Paul, Y.3
Tietze, M.K.4
Trautwein, C.5
Manns, M.6
Kubicka, S.7
-
25
-
-
0023940258
-
Regulated expression and phosphorylation of a possible mammalian cell-cycle control protein
-
Lee MG, Norbury CJ, Spurr NK, Nurse P (1988) Regulated expression and phosphorylation of a possible mammalian cell-cycle control protein. Nature 333: 676-679
-
(1988)
Nature
, vol.333
, pp. 676-679
-
-
Lee, M.G.1
Norbury, C.J.2
Spurr, N.K.3
Nurse, P.4
-
26
-
-
37049005172
-
Ribosomal protein S27-like, a p53-inducible modulator of cell fate in response to genotoxic stress
-
Li J, Tan J, Zhuang L, Banerjee B, Yang X, Chau JF, Lee PL, Hande MP, Li B, Yu Q (2007) Ribosomal protein S27-like, a p53-inducible modulator of cell fate in response to genotoxic stress. Cancer Res 67: 11317-11326
-
(2007)
Cancer Res
, vol.67
, pp. 11317-11326
-
-
Li, J.1
Tan, J.2
Zhuang, L.3
Banerjee, B.4
Yang, X.5
Chau, J.F.6
Lee, P.L.7
Hande, M.P.8
Li, B.9
Yu, Q.10
-
27
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF et al (2004) A map of the interactome network of the metazoan C. elegans. Science 303: 540-543
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
more..
-
28
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP (2003) Network component analysis: reconstruction of regulatory signals in biological systems. Proc Natl Acad Sci USA 100: 15522-15527
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
Boscolo, R.2
Yang, Y.L.3
Tran, L.M.4
Sabatti, C.5
Roychowdhury, V.P.6
-
29
-
-
33846551201
-
The regulation of ATF3 gene expression by mitogen-activated protein kinases
-
Lu D, Chen J, Hai T (2007) The regulation of ATF3 gene expression by mitogen-activated protein kinases. Biochem J 401: 559-567
-
(2007)
Biochem J
, vol.401
, pp. 559-567
-
-
Lu, D.1
Chen, J.2
Hai, T.3
-
30
-
-
0043211850
-
Does metabolic radiolabeling stimulate the stress response? Gene expression profiling reveals differential cellular responses to internal beta versus external gamma radiation
-
MarkoNF, Dieffenbach PB, Yan G, Ceryak S, Howell RW, McCaffrey TA, Hu VW (2003) Does metabolic radiolabeling stimulate the stress response? Gene expression profiling reveals differential cellular responses to internal beta versus external gamma radiation. FASEB J 17: 1470-1486
-
(2003)
FASEB J
, vol.17
, pp. 1470-1486
-
-
Marko, N.F.1
Dieffenbach, P.B.2
Yan, G.3
Ceryak, S.4
Howell, R.W.5
McCaffrey, T.A.6
Hu, V.W.7
-
31
-
-
8444242476
-
Characterization of a MAPKK-like protein kinase TOPK
-
Matsumoto S, Abe Y, Fujibuchi T, Takeuchi T, Kito K, Ueda N, Shigemoto K, Gyo K (2004) Characterization of a MAPKK-like protein kinase TOPK. Biochem Biophys Res Commun 325: 997-1004
-
(2004)
Biochem Biophys Res Commun
, vol.325
, pp. 997-1004
-
-
Matsumoto, S.1
Abe, Y.2
Fujibuchi, T.3
Takeuchi, T.4
Kito, K.5
Ueda, N.6
Shigemoto, K.7
Gyo, K.8
-
32
-
-
67349167059
-
Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay
-
Matsushita K, Takeuchi O, Standley DM, Kumagai Y, Kawagoe T, Miyake T, Satoh T, Kato H, Tsujimura T, Nakamura H, Akira S (2009) Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay. Nature 458: 1185-1190
-
(2009)
Nature
, vol.458
, pp. 1185-1190
-
-
Matsushita, K.1
Takeuchi, O.2
Standley, D.M.3
Kumagai, Y.4
Kawagoe, T.5
Miyake, T.6
Satoh, T.7
Kato, H.8
Tsujimura, T.9
Nakamura, H.10
Akira, S.11
-
33
-
-
57849094907
-
Understanding human metabolic physiology: A genome-to-systems approach
-
Mo ML, Palsson BO (2009) Understanding human metabolic physiology: a genome-to-systems approach. Trends Biotechnol 27: 37-44
-
(2009)
Trends Biotechnol
, vol.27
, pp. 37-44
-
-
Mo, M.L.1
Palsson, B.O.2
-
34
-
-
49649090030
-
Comprehensive transcriptional analysis of the oxidative response in yeast
-
Molina-Navarro MM, Castells-Roca L, Belli G, Garcia-Martinez J, Marin-Navarro J, Moreno J, Perez-Ortin JE, Herrero E (2008) Comprehensive transcriptional analysis of the oxidative response in yeast. J Biol Chem 283: 17908-17918
-
(2008)
J Biol Chem
, vol.283
, pp. 17908-17918
-
-
Molina-Navarro, M.M.1
Castells-Roca, L.2
Belli, G.3
Garcia-Martinez, J.4
Marin-Navarro, J.5
Moreno, J.6
Perez-Ortin, J.E.7
Herrero, E.8
-
35
-
-
0036721164
-
Bay 11-7082 inhibits transcription factor NF-kappaB and induces apoptosis of HTLV-Iinfected T-cell lines and primary adult T-cell leukemia cells
-
Mori N, Yamada Y, Ikeda S, Yamasaki Y, Tsukasaki K, Tanaka Y, Tomonaga M, Yamamoto N, Fujii M (2002) Bay 11-7082 inhibits transcription factor NF-kappaB and induces apoptosis of HTLV-Iinfected T-cell lines and primary adult T-cell leukemia cells. Blood 100: 1828-1834
-
(2002)
Blood
, vol.100
, pp. 1828-1834
-
-
Mori, N.1
Yamada, Y.2
Ikeda, S.3
Yamasaki, Y.4
Tsukasaki, K.5
Tanaka, Y.6
Tomonaga, M.7
Yamamoto, N.8
Fujii, M.9
-
36
-
-
35648978234
-
Regulation of the interferon-inducible p53 target gene TRIM22 (Staf50) in human T lymphocyte activation
-
Obad S, Olofsson T, Mechti N, Gullberg U, Drott K (2007) Regulation of the interferon-inducible p53 target gene TRIM22 (Staf50) in human T lymphocyte activation. J Interferon Cytokine Res 27: 857-864
-
(2007)
J Interferon Cytokine Res
, vol.27
, pp. 857-864
-
-
Obad, S.1
Olofsson, T.2
Mechti, N.3
Gullberg, U.4
Drott, K.5
-
37
-
-
0037446526
-
Expression of the NF-kappa B target gene X-ray-inducible immediate early response factor-1 short enhances TNF-alpha-induced hepatocyte apoptosis by inhibiting Akt activation
-
Osawa Y, Nagaki M, Banno Y, Brenner DA, Nozawa Y, Moriwaki H, Nakashima S (2003) Expression of the NF-kappa B target gene X-ray-inducible immediate early response factor-1 short enhances TNF-alpha-induced hepatocyte apoptosis by inhibiting Akt activation. J Immunol 170: 4053-4060
-
(2003)
J Immunol
, vol.170
, pp. 4053-4060
-
-
Osawa, Y.1
Nagaki, M.2
Banno, Y.3
Brenner, D.A.4
Nozawa, Y.5
Moriwaki, H.6
Nakashima, S.7
-
40
-
-
0030772376
-
Novel inhibitors of cytokine-induced IkappaBalpha phosphorylation and endothelial cell adhesion molecule expression show anti-inflammatory effects in vivo
-
Pierce JW, Schoenleber R, Jesmok G, Best J, Moore SA, Collins T, Gerritsen ME (1997) Novel inhibitors of cytokine-induced IkappaBalpha phosphorylation and endothelial cell adhesion molecule expression show anti-inflammatory effects in vivo. J Biol Chem 272: 21096-21103
-
(1997)
J Biol Chem
, vol.272
, pp. 21096-21103
-
-
Pierce, J.W.1
Schoenleber, R.2
Jesmok, G.3
Best, J.4
Moore, S.A.5
Collins, T.6
Gerritsen, M.E.7
-
41
-
-
0141433282
-
NuSAP, a novel microtubule-associated protein involved in mitotic spindle organization
-
Raemaekers T, Ribbeck K, Beaudouin J, Annaert W, Van Camp M, Stockmans I, Smets N, Bouillon R, Ellenberg J, Carmeliet G (2003) NuSAP, a novel microtubule-associated protein involved in mitotic spindle organization. J Cell Biol 162: 1017-1029
-
(2003)
J Cell Biol
, vol.162
, pp. 1017-1029
-
-
Raemaekers, T.1
Ribbeck, K.2
Beaudouin, J.3
Annaert, W.4
Van Camp, M.5
Stockmans, I.6
Smets, N.7
Bouillon, R.8
Ellenberg, J.9
Carmeliet, G.10
-
42
-
-
33846601454
-
A role for NuSAP in linking microtubules to mitotic chromosomes
-
Ribbeck K, Raemaekers T, Carmeliet G, Mattaj IW (2007) A role for NuSAP in linking microtubules to mitotic chromosomes. Curr Biol 17: 230-236
-
(2007)
Curr Biol
, vol.17
, pp. 230-236
-
-
Ribbeck, K.1
Raemaekers, T.2
Carmeliet, G.3
Mattaj, I.W.4
-
43
-
-
16144362452
-
Identification of BTG2, an antiproliferative p53-dependent component of the DNA damage cellular response pathway
-
Rouault JP, Falette N, Guehenneux F, Guillot C, Rimokh R, Wang Q, Berthet C, Moyret-Lalle C, Savatier P, Pain B, Shaw P, Berger R, Samarut J, Magaud JP, Ozturk M, Samarut C, Puisieux A (1996) Identification of BTG2, an antiproliferative p53-dependent component of the DNA damage cellular response pathway. Nat Genet 14: 482-486
-
(1996)
Nat Genet
, vol.14
, pp. 482-486
-
-
Rouault, J.P.1
Falette, N.2
Guehenneux, F.3
Guillot, C.4
Rimokh, R.5
Wang, Q.6
Berthet, C.7
Moyret-Lalle, C.8
Savatier, P.9
Pain, B.10
Shaw, P.11
Berger, R.12
Samarut, J.13
Magaud, J.P.14
Ozturk, M.15
Samarut, C.16
Puisieux, A.17
-
44
-
-
53949098609
-
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
-
Shalem O, Dahan O, Levo M, Martinez MR, Furman I, Segal E, Pilpel Y (2008) Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Mol Syst Biol 4: 223
-
(2008)
Mol Syst Biol
, vol.4
, pp. 223
-
-
Shalem, O.1
Dahan, O.2
Levo, M.3
Martinez, M.R.4
Furman, I.5
Segal, E.6
Pilpel, Y.7
-
45
-
-
0034565041
-
CLICK: A clustering algorithm with applications to gene expression analysis
-
Sharan R, Shamir R (2000) CLICK: a clustering algorithm with applications to gene expression analysis. Proc Int Conf Intell Syst Mol Biol 8: 307-316
-
(2000)
Proc Int Conf Intell Syst Mol Biol
, vol.8
, pp. 307-316
-
-
Sharan, R.1
Shamir, R.2
-
46
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3, Article 3
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
47
-
-
28544431948
-
The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress
-
Staib F, Robles AI, Varticovski L, Wang XW, Zeeberg BR, Sirotin M, Zhurkin VB, Hofseth LJ, Hussain SP,Weinstein JN, Galle PR, Harris CC (2005) The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress. Cancer Res 65: 10255-10264
-
(2005)
Cancer Res
, vol.65
, pp. 10255-10264
-
-
Staib, F.1
Robles, A.I.2
Varticovski, L.3
Wang, X.W.4
Zeeberg, B.R.5
Sirotin, M.6
Zhurkin, V.B.7
Hofseth, L.J.8
Hussain, S.P.9
Weinstein, J.N.10
Galle, P.R.11
Harris, C.C.12
-
48
-
-
4644336002
-
Dose and dose-rate effects of low-dose ionizing radiation on activation of Trp53 in immortalized murine cells
-
Sugihara T, Magae J,Wadhwa R, Kaul SC, Kawakami Y, Matsumoto T, Tanaka K (2004) Dose and dose-rate effects of low-dose ionizing radiation on activation of Trp53 in immortalized murine cells. Radiat Res 162: 296-307
-
(2004)
Radiat Res
, vol.162
, pp. 296-307
-
-
Sugihara, T.1
Magae, J.2
Wadhwa, R.3
Kaul, S.C.4
Kawakami, Y.5
Matsumoto, T.6
Tanaka, K.7
-
49
-
-
50849090969
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
-
Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A (2008) Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods 5: 829-834
-
(2008)
Nat Methods
, vol.5
, pp. 829-834
-
-
Valouev, A.1
Johnson, D.S.2
Sundquist, A.3
Medina, C.4
Anton, E.5
Batzoglou, S.6
Myers, R.M.7
Sidow, A.8
-
50
-
-
0033531264
-
PA26, a novel target of the p53 tumor suppressor and member of the GADD family of DNA damage and growth arrest inducible genes
-
Velasco-Miguel S, Buckbinder L, Jean P, Gelbert L, Talbott R, LaidlawJ, Seizinger B, Kley N (1999) PA26, a novel target of the p53 tumor suppressor and member of the GADD family of DNA damage and growth arrest inducible genes. Oncogene 18: 127-137
-
(1999)
Oncogene
, vol.18
, pp. 127-137
-
-
Velasco-Miguel, S.1
Buckbinder, L.2
Jean, P.3
Gelbert, L.4
Talbott, R.5
Laidlaw, J.6
Seizinger, B.7
Kley, N.8
-
51
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457: 854-858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
Afzal, V.11
Ren, B.12
Rubin, E.M.13
Pennacchio, L.A.14
-
52
-
-
0034703742
-
P53: Death star
-
Vousden KH (2000) p53: death star. Cell 103: 691-694
-
(2000)
Cell
, vol.103
, pp. 691-694
-
-
Vousden, K.H.1
-
53
-
-
30344478870
-
A global map of p53 transcription-factor binding sites in the human genome
-
DOI 10.1016/j.cell.2005.10.043, PII S0092867405013991
-
Wei CL, Wu Q, Vega VB, Chiu KP, Ng P, Zhang T, Shahab A, Yong HC, Fu Y,Weng Z, Liu J, Zhao XD, Chew JL, Lee YL, Kuznetsov VA, Sung WK, Miller LD, Lim B, Liu ET, Yu Q et al (2006) A global map of p53 transcription-factor binding sites in the human genome. Cell 124: 207-219 (Pubitemid 43069320)
-
(2006)
Cell
, vol.124
, Issue.1
, pp. 207-219
-
-
Wei, C.-L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
Liu, J.11
Zhao, X.D.12
Chew, J.-L.13
Lee, Y.L.14
Kuznetsov, V.A.15
Sung, W.-K.16
Miller, L.D.17
Lim, B.18
Liu, E.T.19
Yu, Q.20
Ng, H.-H.21
Ruan, Y.22
more..
-
54
-
-
33646748283
-
A systems approach to mapping DNA damage response pathways
-
Workman CT, Mak HC, McCuine S, Tagne JB, Agarwal M, Ozier O, Begley TJ, Samson LD, Ideker T (2006) A systems approach to mapping DNA damage response pathways. Science 312: 1054-1059
-
(2006)
Science
, vol.312
, pp. 1054-1059
-
-
Workman, C.T.1
Mak, H.C.2
McCuine, S.3
Tagne, J.B.4
Agarwal, M.5
Ozier, O.6
Begley, T.J.7
Samson, L.D.8
Ideker, T.9
-
55
-
-
0041523923
-
Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes
-
Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, Magnasco M, Darnell Jr JE (2003) Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res 13: 1863-1872
-
(2003)
Genome Res
, vol.13
, pp. 1863-1872
-
-
Yang, E.1
Van Nimwegen, E.2
Zavolan, M.3
Rajewsky, N.4
Schroeder, M.5
Magnasco, M.6
Darnell Jr., J.E.7
-
56
-
-
44949174976
-
Tastin is required for bipolar spindle assembly and centrosome integrity during mitosis
-
Yang S, Liu X, Yin Y, Fukuda MN, Zhou J (2008) Tastin is required for bipolar spindle assembly and centrosome integrity during mitosis. FASEB J 22: 1960-1972
-
(2008)
FASEB J
, vol.22
, pp. 1960-1972
-
-
Yang, S.1
Liu, X.2
Yin, Y.3
Fukuda, M.N.4
Zhou, J.5
-
57
-
-
0037119354
-
Regulation of two JunD isoforms by Jun N-terminal kinases
-
Yazgan O, Pfarr CM (2002) Regulation of two JunD isoforms by Jun N-terminal kinases. J Biol Chem 277: 29710-29718
-
(2002)
J Biol Chem
, vol.277
, pp. 29710-29718
-
-
Yazgan, O.1
Pfarr, C.M.2
-
58
-
-
12744261506
-
A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data
-
Zou M, Conzen SD (2005) A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics 21: 71-79
-
(2005)
Bioinformatics
, vol.21
, pp. 71-79
-
-
Zou, M.1
Conzen, S.D.2
|