Two novel Peronospora species are associated with recent reports of downy mildew on sages

Mycological Research

Volumn 113, Issue 12, 2009, Pages 1340-1350

  Choi, Young Joon ^a   Shin, Hyeon Dong ^a   Thines, Marco ^b  

^a Korea University   (South Korea)

^b UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

Cox2 mtDNA; Geographic origin; Host specificity; ITS rDNA; Peronosporaceae; Taxonomy

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; RNA 18S;

ALLOPATRY; FUNGAL DISEASE; FUNGUS; GEOGRAPHICAL DISTRIBUTION; TAXONOMY;

ARTICLE; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; GENETICS; HOST PATHOGEN INTERACTION; MOLECULAR GENETICS; PARASITOLOGY; PERONOSPORA; PHYLOGENY; PLANT DISEASE; SALVIA OFFICINALIS; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; HOST-PATHOGEN INTERACTIONS; MOLECULAR SEQUENCE DATA; PERONOSPORA; PHYLOGENY; PLANT DISEASES; RNA, RIBOSOMAL, 18S; SALVIA OFFICINALIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

PERONOSPORA; PERONOSPORA LAMII; PERONOSPORACEAE; SALVIA; SALVIA OFFICINALIS; SALVIA PLEBEIA; SALVIA REFLEXA;

EID: 70649094273     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2009.08.010     Document Type: Article

References (64)

1. Belbahri L., Calmin G., Pawlowski J., and Lefort F. Phylogenetic analysis and real time PCR detection of a presumably undescribed Peronospora species on sweet basil and sage. Mycological Research 109 (2005) 1276-1287
2. Biga M.L.B. Riesaminazione delle specie del genere Albugo in base alla morfologia dei conidi. Sydowia 9 (1955) 339-358
3. Byrne J. Downy mildew on Salvia. Michigan State University's Greenhouse Alert 9 (2001) 1
4. Choi D., and Priest M.J. A key to the genus Albugo. Mycotaxon 53 (1995) 261-272
5. Choi Y.J., Denchev C.M., and Shin H.D. Morphological and molecular analyses support the existence of host-specific Peronospora species infecting Chenopodium. Mycopathologia 168 (2008) 155-164
6. Choi Y.J., Hong S.B., and Shin H.D. Diversity of the Hyaloperonospora parasitica complex from core brassicaceous hosts based on ITS rDNA sequences. Mycological Research 107 (2003) 1314-1322
7. Choi Y.J., Hong S.B., and Shin H.D. Extreme size and sequence variation in the ITS rDNA of Bremia lactucae. Mycopathologia 163 (2007) 91-95
8. Choi Y.J., Hong S.B., and Shin H.D. Re-consideration of Peronospora farinosa infecting Spinacia oleracea as distinct species, Peronospora effusa. Mycological Research 110 (2007) 381-391
9. Choi Y.J., Shin H.D., Hong S.B., and Thines M. Morphological and molecular discrimination among Albugo candida materials infecting Capsella bursa-pastoris world-wide. Fungal Diversity 27 (2007) 11-34
10. Choi Y.J., Shin H.D., Ploch S., and Thines M. Evidence for uncharted biodiversity in the Albugo candida complex, with the description of a new species. Mycological Research 112 (2008) 1327-1334
11. Constantinescu O. Peronospora complex on Compositae. Sydowia 41 (1989) 79-107
12. Constantinescu O. An annotated list of Peronospora names. Thunbergia 15 (1991) 1-110
13. Constantinescu O. Plasmopara orientalis sp. nov. (Chromista, Peronosporales). Sydowia 54 (2002) 129-136
14. Constantinescu O. The nomenclature of Plasmopara (Chromista, Peronosporales) parasitic on Geraniaceae. Taxon 53 (2004) 523-525
15. Cooke D.E.L., Drenth A., Duncan J.M., Wagels G., and Brasier M. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology 30 (2000) 17-32
16. Cunnington J.H. DNA sequence variation supports multiple host-specialised taxa in the Peronospora viciae complex (Chromista: Peronosporales). Nova Hedwigia 82 (2006) 23-29
17. Ellis J.B., and Kellerman W.A. New Kansas fungi. The Journal of Mycology 3 (1887) 102-105
18. Gamliel A., and Yarden O. Diversification of diseases affecting herb crops in Israel accompanies the increase in herb crop production. Phytoparasitica 26 (1998) 1-6
19. García-Blázquez G., Göker M., Voglmayr H., Martín M.P., Tellería M.T., and Oberwinkler F. Phylogeny of Peronospora, parasitic on Fabaceae, based on ITS sequences. Mycological Research 112 (2008) 502-512
20. Gäumann E. Über die Formen der Peronospora parasitica (Pers.) Fries. Ein Beitrag zur Speziesfrage bei den parasitischen Pilzen. Beihefte zum Botanischen Centralblatt 34 (1918) 395-533
21. Gäumann E. Beiträge zu einer Monographie der Gattung Peronospora Corda. Beiträge zur Kryptogamenflora der Schweiz 5 (1923) 1-360
22. Geyer C.J. Markov chain Monte Carlo Maximum Likelihood. In: Keramidas E.M. (Ed). Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface (1991), Interface Foundation, Fairfax Station, Virginia 156-163
23. Göker M., Riethmüller A., Voglmayr H., Weiß M., and Oberwinkler F. Phylogeny of Hyaloperonospora based on nuclear ribosomal internal transcribed spacer sequences. Mycological Progress 3 (2004) 83-94
24. Göker M., Voglmayr H., García-Blázquez G., and Oberwinkler F. Species delimitation in downy mildews: the case of Hyaloperonospora in the light of nuclear ribosomal ITS and LSU sequences. Mycological Research 113 (2009) 308-325
25. Hill C.F., Pearson H.G., and Gill G.S.C. Peronospora dianthi and Peronospora lamii, two downy mildews recently detected in New Zealand. New Zealand Plant Protection 57 (2004) 348
26. Holcomb G.E. First report of downy mildew caused by Peronospora lamii on Salvia splendens and Salvia coccinea. Plant Disease 84 (2000) 1154
27. Holmgren P.K., and Holmgren N.H. Index Herbariorum (1998), New York Botanical Garden. http://sciweb.nybg.org/science2/indexHerbariorum.asp
28. Hudspeth D.S.S., Nadler S.A., and Hudspeth M.E.S. A cox2 molecular phylogeny of the Peronosporomycetes. Mycologia 92 (2000) 674-684
29. Hudspeth D.S.S., Stenger D., and Hudspeth M.E.S. A cox2 phylogenetic hypothesis for the downy mildews and white rusts. Fungal Diversity 13 (2003) 47-57
30. Humphreys-Jones D.R., Barnes A.V., and Lane C.R. First report of the downy mildew Peronospora lamii on Salvia officinalis and Rosmarinus officinalis in the UK. Plant Pathology 57 (2008) 372
31. Kochman J, Majewski T, 1970. Grzyby (Mycota). Tom IV. Glonowce (Phycomycetes), Wroslikowe (Peronosporales). Panstwowe Wydawnictwo Naukowe, Warzawa. (In Polish).
32. Lee S.B., and Taylor J.W. Isolation of DNA from fungal mycelia and single spores. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, San Diego 282-287
33. Liberato J.R., Forsberg L., Grice K.R., and Shivas R.G. Peronospora lamii on Lamiaceae in Australia. Australasian Plant Pathology 35 (2006) 367-368
34. McMillan Jr. R.T., and Graves W.R. First report of downy mildew of Salvia in Florida. Plant Disease 78 (1994) 317
35. Minuto A., Pensa P., and Garibaldi A. Peronospora lamii, nuovo parassita fogliara della salvia. Colture-Protette 28 (1999) 63-64
36. Moncalvo J.M., Wang H.H., and Hseu R.S. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacer and 25S ribosomal DNA sequences. Mycologia 87 (1995) 223-238
37. Müller J. Peronospora swinglei - ein neuer Falscher Mehltaupilz für die Tschechische Republik. Czech Mycology 51 (1999) 185-191
38. Plenk A. Peronospora lamii A. Brown, eine noch in Österreich seltene Krankheit an Salvia officinalis (2002), Fachgruppe Phytomedizin Austrian Association of Agricultural Research Institutions, ALVA Tagung p. 1
39. Posada D., and Crandall K.A. Modeltest. Testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
40. Riethmüller A., Voglmayr H., Göker M., Weiß M., and Oberwinkler F. Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia 94 (2002) 834-849
41. Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
42. Scott J.B., Hay F.S., and Wilson C.R. Phylogenetic analysis of the downy mildew pathogen of oilseed poppy in Tasmania, and its detection by PCR. Mycological Research 108 (2004) 198-205
43. Shin H.D., and Choi Y.J. Peronosporaceae of Korea (2006), National Institute of Agricultural Science and Technology, Suwon, Korea.
44. Stamatakis E. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
45. Staneviciené S. Peronosporales. In: Mazelaitis J., and Staneviciené S. (Eds). Lietuvos Grybai. I. Gleivunai (Myxomycota), Peronosporieciai (Peronosporales) vol. 1 (1995), Mokslo ir Enciklopediju Leidykla, Vilnius 85-291
46. Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0 b10 (2002), Sinauer Associates, Sunderland, Massachusetts
47. Thines M., Choi Y.J., Kemen E., Ploch S., Holub E.B., Shin H.D., and Jones J.D.G. A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae). Persoonia 22 (2009) 123-128
48. Thines M., Göker M., Telle S., Ryley M., Mathur K., Narayana Y.D., Spring O., and Thakur R.P. Phylogenetic relationships of graminicolous downy mildews based on cox2 sequence data. Mycological Research 112 (2008) 345-351
49. Thines M., and Spring O. A revision of Albugo (Chromista, Peronosporomycetes). Mycotaxon 92 (2005) 443-458
50. Thines M., Telle S., Ploch S., and Runge F. Identity of the downy mildew pathogens on sage, basil and coleus, with implications for quarantine measures. Mycological Research 113 (2009) 532-540
51. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24 (1997) 4876-4882
52. Ul'yanishchev V.I., Osipian L.L., Kanchaveli L.A., and Akhundov T.M. Peronosporovye griby (Peronosporaceous fungi). In: Ul'yanishchev V.I. (Ed). Opredelitel' gribov Zakavkaz'ya (1985), Erevan University, Erevan
53. Vanev SG, Dimitrova EG, Illieva EI, 1993. Gybite v Bylgariya. 2 tom. Razred Peronosporales. [Fungi Bulgaricae. Vol. 2. Ordo Peronosporales]. Bulgarian Academy of Sciences, Sofia. (In Bulgarian).
54. Voglmayr H. Phylogenetic relationships of Peronospora and related genera based on nuclear ribosomal ITS sequences. Mycological Research 107 (2003) 1132-1142
55. Voglmayr H., and Constantinescu O. Revision and reclassification of three Plasmopara species based on morphological and molecular phylogenetic data. Mycological Research 112 (2008) 487-501
56. Voglmayr H., Fatehi J., and Constantinescu O. Revision of Plasmopara (Chromista, Peronosporales) parasitic on Geraniaceae. Mycological Research 110 (2006) 633-645
57. Voglmayr H., and Riethmüller A. Phylogenetic relationships of Albugo species (white blister rusts) based on LSU rDNA sequence and oospore data. Mycological Research 110 (2006) 75-85
58. Voglmayr H., Riethmüller A., Göker M., Weiss M., and Oberwinkler F. Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data. Mycological Research 108 (2004) 1011-1024
59. Walker J.B., and Sytsma K.J. Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever. Annals of Botany 100 (2007) 375-391
60. Walker J.B., Sytsma K.J., Treutlein J., and Wink M. Salvia (Lamiaceae) is not monophyletic: implications for the systematics, radiation, and ecological specializations of Salvia and tribe Mentheae. American Journal of Botany 91 (2004) 1115-1125
61. White T.J., Bruns T., Lee S., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, San Diego 315-322
62. Wilson G.W. Studies in North American Peronosporales - VI. Notes on miscellaneous species. Mycologia 6 (1914) 192-210
63. Yerkes W.D., and Shaw C.G. Taxonomy of Peronospora species on Cruciferae and Chenopodiaceae. Phytopathology 49 (1959) 499-507
64. Yu Y.-n., Zhung W.-y., Liu X.-j., Ma G.-z., Li J.-l., Yin G.-y., Yang Z.-s., Tao J.-f., Shen Y.-z., Wang Y.-x., and Liu Y.-l. Peronosporales. Flora Fungorum Sinicorum vol. 6 (1998), Science Press, Beijing (in Chinese)