Differential tissue-specific distribution of transcripts for the duplicated fatty acid-binding protein 10 (fabp10) genes in embryos, larvae and adult zebrafish (Danio rerio)

FEBS Journal

Volumn 276, Issue 22, 2009, Pages 6787-6797

  Venkatachalam, Ananda B ^a   Thisse, Christine ^b   Thisse, Bernard ^b   Wright, Jonathan M ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b UNIVERSITY OF VIRGINIA   (United States)

Author keywords

Duplicated genes; Gene phylogeny; Gene regulation; MRNA distribution; Whole genome duplication

Indexed keywords

ARTICLE; CHROMOSOME 16; CHROMOSOME 19; FATTY ACID BINDING PROTEIN 10 GENE; GENOME; IN SITU HYBRIDIZATION; LARVA; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RADIATION HYBRID MAPPING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHROMOSOMES, MAMMALIAN; EMBRYO, NONMAMMALIAN; FATTY ACID-BINDING PROTEINS; GENE DUPLICATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; INTESTINES; LARVA; LIVER; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; TESTIS; ZEBRAFISH; ZEBRAFISH PROTEINS;

ACTINOPTERYGII; DANIO RERIO; VERTEBRATA;

EID: 70350437420     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2009.07393.x     Document Type: Article

References (53)

1. Bernlohr DA, Simpson MA, Hertzel AV Banaszak LJ (1997) Intracellular lipid-binding proteins and their genes. Annu Rev Nutr 17, 277 303.
2. Schaap FG, van der Vusse GJ Glatz JFC (2002) Evolution of the family of intracellular lipid binding proteins in vertebrates. Mol Cell Biochem 239, 69 77.
3. Schleicher CH, Córdoba OL, Santomé JA Dell'Angelica EC (1995) Molecular evolution of the multigene family of intracellular lipid-binding proteins. Biochem Mol Biol Int 36, 1117 1125.
4. Hertzel AV Bernlohr DA (2000) The mammalian fatty acid-binding multigene family: molecular and genetic insights into function. Trends Endocrinol Metab 11, 175 180.
5. Zimmerman AW Veerkamp JH (2002) New insights into the structure and function of fatty acid-binding proteins. Cell Mol Life Sci 11, 1096 1116.
6. Sharma MK, Liu R-Z, Thisse C, Thisse B, Denovan-Wright EM Wright JM (2006) Hierarchical subfunctionalization of fabp1a, fabp1b and fabp10 tissue-specific expression may account for retention of these duplicated genes in the zebrafish (Danio rerio) genome. FEBS J 273, 3216 3229.
7. Binas B, Danneberg H, McWhir J, Mullins L Clark AJ (1999) Requirement for the heart-type fatty acid binding protein in cardiac fatty acid utilization. FASEB J 13, 805 812.
8. Schaap FG, Binas B, Danneberg H, van der Vusse GJ Glatz JFC (1999) Impaired long-chain fatty acid utilization by cardiac myocytes isolated from mice lacking the heart-type fatty acid binding protein gene. Circ Res 85, 329 337.
9. Ribarik Coe N, Simpson MA Bernlohr DA (1999) Targeted disruption of the adipocyte lipid-binding protein (aP2 protein) gene impairs fat cell lipolysis and increases cellular fatty acid levels. J Lipid Res 40, 967 972.
10. Corsico B, Liou HL Storch J (2004) The alpha-helical domain of liver fatty acid binding protein is responsible for the diffusion-mediated transfer of fatty acids to phospholipid membranes. Biochemistry 43, 3600 3607.
11. Ho SY, Delgado L Storch J (2002) Monoacylglycerol metabolism in human intestinal Caco-2 cells: evidence for metabolic compartmentation and hydrolysis. J Biol Chem 277, 1816 1823.
12. Murota K Storch J (2005) Uptake of micellar long-chain fatty acid and sn-2-monoacylglycerol into human intestinal Caco-2 cells exhibits characteristics of protein-mediated transport. J Nutr 135, 1626 1630.
13. Storch J, Veerkamp JH Hsu KT (2002) Similar mechanisms of fatty acid transfer from human and rodent fatty acid-binding proteins to membranes: liver, intestine, heart muscle and adipose tissue FABPs. Mol Cell Biochem 239, 25 33.
14. Veerkamp JH van Moerkerk HTB (1993) Fatty acid-binding protein and its relation to fatty acid oxidation. Mol Cell Biochem 123, 101 106.
15. Glatz JF van der Vusse GJ (1996) Cellular fatty acid-binding proteins: their function and physiological significance. Prog Lipid Res 35, 243 282.
16. Ong DE, Newcomer ME Chytil F (1994) Cellular retinoid-binding proteins. In The Retinoids: Biology, Chemistry and Medicine, 2nd edn (Sporn MB, Roberts AB Goodman DS eds pp. 283 317. Raven Press, New York, NY.
17. Wu Q, Andolfatto P Haunerland NH (2001) Cloning and sequence of the gene encoding the muscle fatty acid binding protein from the desert locust, Schistocerca gregaria. Insect Biochem Mol Biol 31, 553 562. (Pubitemid 32373902)
18. Ceciliani F, Monaco HL, Ronchi S, Faotto L Spadon P (1994) The primary structure of a basic (pI 9.0) fatty acid-binding protein from liver of Gallus domesticus. Comp Biochem Physiol 109, 261 271.
19. Di Pietro SM, Dell'Angelica EC, Veerkamp JH, Sterin-Speziale N Santomé JA (1997) Amino acid sequence, binding properties and evolutionary relationships of the basic liver fatty acid-binding protein from the catfish Rhamdia sapo. Eur J Biochem 249, 510 517.
20. Di Pietro SM Santomé JA (2001) Structural and biochemical characterization of the lungfish (Lepidosiren paradoxa) liver basic fatty acid binding protein. Arch Biochem Biophys 388, 81 90.
21. Jordal AO, Hordvik I, Pelsers M, Bernlohr DA Torstensen BE (2006) FABP3 and FABP10 in Atlantic salmon (Salmo salar L.) - general effects of dietary fatty acid composition and life cycle variations. Comp Biochem Physiol, Part B: Biochem Mol Biol 145, 147 158.
22. Denovan-Wright EM, Pierce M, Sharma MK Wright JM (2000) cDNA sequence and tissue-specific expression of a basic liver-type fatty acid binding protein in adult zebrafish (Danio rerio). Biochim Biophys Acta 1492, 227 232. (Pubitemid 30349203)
23. Di Pietro SM, Veerkamp JH Santomé JA (1999) Isolation, amino acid sequencing and binding properties of two fatty acid-binding proteins from axolotl (Ambistoma mexicanum) liver. Evolutionary relationship. Eur J Biochem 259, 127 134.
24. Schleicher CH Santomé JA (1996) Purification, characterization, and partial amino acid sequencing of an amphibian liver fatty acid binding protein. Biochem Cell Biol 74, 109 115.
25. Córdoba OL, Sánchez EI Santomé JA (1999) The main fatty acid-binding protein in the liver of the shark (Halaetunus bivius) belongs to the liver basic type. Isolation, amino acid sequence determination and characterization. Eur J Biochem 265, 832 838.
26. Nichesola D, Perduca M, Capaldi S, Carriso ME, Righetti PG Monaco HL (2004) Crystal structure of chicken liver basic fatty acid-binding protein complexed with cholic acid. Biochemistry 43, 14072 14079.
27. Furlong RF Holland PW (2002) Were vertebrates octoploid? Philos Trans R Soc Lond B: Biol Sci 357, 531 544.
28. Vandepoele K, De Vos W, Taylor JS, Meyer A Van de Peer Y (2004) Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101, 1638 1643.
29. Mulley J Holland P (2004) Small genome, big insights. Nature 431, 916 917.
30. Breathnach R Chambon P (1981) Organization and expression of eukaryotic split genes coding for proteins. Annu Rev Biochem 50, 349 383.
31. Thompson JD, Higgins DG Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673 4680.
32. Tamura K, Dudley J, Nei M Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596 1599.
33. Hukriede NA, Joly L, Tsang M, Miles J, Tellis P, Epstein JA, Barbazuk WB, Li FN, Paw B, Postlethwait JH et al. (1999) Radiation hybrid mapping of the zebrafish genome. Proc Natl Acad Sci USA 96, 9745 9750.
34. Kurtz A, Zimmer A, Schnütgen F, Brüning G, Spener F Müller T (1994) The expression pattern of a novel gene encoding brain-fatty acid binding protein correlates with neuronal and glial cell development. Development 120, 2637 2649.
35. Liu R-Z, Denovan-Wright EM, Degrave A, Thisse C, Thisse B Wright JM (2004) Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio). Gene Expr Patterns 4, 379 387.
36. Liu R-Z, Sun Q, Thisse C, Thisse B, Denovan-Wright EM, Degrave A Wright JM (2005) The cellular retinol-binding protein genes are duplicated and differentially transcribed in the developing and adult zebrafish (Danio rerio). Mol Biol Evol 22, 469 477.
37. Sharma MK, Saxena V, Liu R-Z, Thisse C, Thisse B, Denovan-Wright EM Wright JM (2005) Differential expression of the duplicated cellular retinoic acid-binding protein 2 genes (crabp2a and crabp2b) during zebrafish embryonic development. Gene Expr Patterns 5, 371 379. (Pubitemid 40124552)
38. Karanth S, Denovan-Wright EM, Thisse C, Thisse B Wright JM (2008) The evolutionary relationship between the duplicated copies of the zebrafish fabp11 gene and the tetrapod FABP4, FABP5, FABP8 and FABP9 genes. FEBS J 275, 3031 3040.
39. Van de Peer Y (2004) Tetraodon genome confirms takifugu findings: most fish are ancient polyploids. Genome Biol 5, 250.
40. Woods IG, Kelly PD, Chu F, Ngo-Hazelett P, Yan Y-L, Huang H, Postlethwait JH Talbot WS (2000) A comparative map of the zebrafish genome. Genome Res 10, 1903 1914.
41. Postlethwait JH, Woods IG, Ngo-Hazelett P, Yan Y-L, Kelly PD, Chu F, Huang H, Hill-Force A Talbot WS (2000) Zebrafish comparative genomics and the origin of vertebrate chromosomes. Genome Res 10, 1890 1902.
42. Taylor JS, Van de Peer Y, Braasch I Meyer A (2001) Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos Trans R Soc Lond B Biol Sci 356, 1661 1679.
43. Taylor JS, Braasch I, Frickey T, Meyer A Van de Peer Y (2003) Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res 13, 382 390.
44. Gates MA, Kim L, Egan ES, Cardozo T, Sirotkin HI, Dougan ST, Lashkari D, Abagyan R, Schier AF Talbot WS (1999) A genetic linkage map of zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Res 9, 334 347.
45. Robinson-Rechavi M, Marchand O, Escriva H, Bardet PL, Zelus D, Hughes S Laudet V (2001) Euteleost fish genomes are characterized by expansion of gene families. Genome Res 11, 781 788.
46. Ohno S (1970) Evolution by Gene Duplication. Springer, New York, NY.
47. Force A, Lynch M, Pickett FB, Amores A, Yan YL Postlethwait JH (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151, 1531 1545.
48. Lynch M Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290, 1151 1155.
49. Murai A, Furuse M, Kitaguchi K, Kusumoto K, Nakanishi Y, Kobayashi M Horio F (2009) Characterization of critical factors influencing gene expression of two types of fatty acid binding proteins (L-FABP and Lb-FABP) in the liver of birds. Comp Biochem Physiol 154 (2), 216 223.
50. Westerfield M (1995) The Zebrafish Book: A Guide for the Laboratory Use of Zebrafish (Danio rerio), 3rd edn. University of Oregon Press, Eugene, OR.
51. Thisse C Thisse B (2008) High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat Protoc 3, 59 69.
52. Pattyn F, Robbrecht P, Speleman F, De Paepe A Vandesompele J (2006) RTPrimerDB: the real-time PCR primer and probe database, major update 2006. Nucleic Acids Res 34, D684 D688.
53. Bustin SA, Benes V, Nolan T Pfaffl MW (2005) Quantitative real-time RT-PCR - a perspective. J Mol Endocrinol 34, 597 601.