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Volumn 273, Issue 14, 2006, Pages 3216-3229

Hierarchical subfunctionalization of fabp1a, fabp1b and fabp10 tissue-specific expression may account for retention of these duplicated genes in the zebrafish (Danio rerio) genome

Author keywords

Embryonic development; FABP1; Gene duplication; Linkage mapping; Subfunctionalization

Indexed keywords

COMPLEMENTARY DNA; FATTY ACID BINDING PROTEIN; GENE PRODUCT; LIPOCALIN; MESSENGER RNA;

EID: 33745630674     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2006.05330.x     Document Type: Article
Times cited : (50)

References (53)
  • 2
    • 0036812339 scopus 로고    scopus 로고
    • Evolution of the family of intracellular lipid binding proteins in vertebrates
    • Schaap FG, van der Vusse GJ & Glatz JF (2002) Evolution of the family of intracellular lipid binding proteins in vertebrates. Mol Cell Biochem 239, 69-77.
    • (2002) Mol Cell Biochem , vol.239 , pp. 69-77
    • Schaap, F.G.1    Van Der Vusse, G.J.2    Glatz, J.F.3
  • 3
    • 0015496783 scopus 로고
    • A binding protein for fatty acids in cytosol of intestinal mucosa, liver, myocardium, and other tissues
    • Ockner RK, Manning JA, Poppenhausen RB & Ho WK (1972) A binding protein for fatty acids in cytosol of intestinal mucosa, liver, myocardium, and other tissues. Science 177, 56-58.
    • (1972) Science , vol.177 , pp. 56-58
    • Ockner, R.K.1    Manning, J.A.2    Poppenhausen, R.B.3    Ho, W.K.4
  • 4
    • 0036634367 scopus 로고    scopus 로고
    • New insights into the structure and function of fatty acid-binding proteins
    • Zimmerman AW & Veerkamp JH (2002) New insights into the structure and function of fatty acid-binding proteins. Cell Mol Life Sci 59, 1096-1116.
    • (2002) Cell Mol Life Sci , vol.59 , pp. 1096-1116
    • Zimmerman, A.W.1    Veerkamp, J.H.2
  • 5
    • 0043253165 scopus 로고    scopus 로고
    • The mammalian fatty acid-binding protein multigene family: Molecular and genetic insights into function
    • Hertzel AV & Bernlohr DA (2000) The mammalian fatty acid-binding protein multigene family: molecular and genetic insights into function. Trends Endocrinol Metab 11, 175-180.
    • (2000) Trends Endocrinol Metab , vol.11 , pp. 175-180
    • Hertzel, A.V.1    Bernlohr, D.A.2
  • 6
    • 0038647967 scopus 로고    scopus 로고
    • A cellular retinoic acid-binding protein from zebrafish (Danio rerio): cDNA sequence, phylogenetic analysis, mRNA expression, and gene linkage mapping
    • Sharma MK, Denovan-Wright EM, Boudreau ME & Wright JM (2003) A cellular retinoic acid-binding protein from zebrafish (Danio rerio): cDNA sequence, phylogenetic analysis, mRNA expression, and gene linkage mapping. Gene 311, 119-128.
    • (2003) Gene , vol.311 , pp. 119-128
    • Sharma, M.K.1    Denovan-Wright, E.M.2    Boudreau, M.E.3    Wright, J.M.4
  • 7
    • 22544434027 scopus 로고    scopus 로고
    • Retention of the duplicated cellular retinoic acid-binding protein 1 genes (crabp1a and crabp1b) in the zebrafish genome by subfunctionalization of tissue-specific expression
    • Liu RZ, Sharma MK, Sun Q, Thisse C, Thisse B, Denovan-Wright EM & Wright JM (2005) Retention of the duplicated cellular retinoic acid-binding protein 1 genes (crabp1a and crabp1b) in the zebrafish genome by subfunctionalization of tissue-specific expression. FEBS J 272, 3561-3571.
    • (2005) FEBS J , vol.272 , pp. 3561-3571
    • Liu, R.Z.1    Sharma, M.K.2    Sun, Q.3    Thisse, C.4    Thisse, B.5    Denovan-Wright, E.M.6    Wright, J.M.7
  • 8
    • 14544292603 scopus 로고    scopus 로고
    • The cellular retinol-binding protein genes are duplicated and differentially transcribed in the developing and adult zebrafish (Danio rerio)
    • Liu RZ, Sun Q, Thisse C, Thisse B, Wright JM & Denovan-Wright EM (2005) The cellular retinol-binding protein genes are duplicated and differentially transcribed in the developing and adult zebrafish (Danio rerio). Mol Biol Evol 22, 469-477.
    • (2005) Mol Biol Evol , vol.22 , pp. 469-477
    • Liu, R.Z.1    Sun, Q.2    Thisse, C.3    Thisse, B.4    Wright, J.M.5    Denovan-Wright, E.M.6
  • 9
    • 0032557156 scopus 로고    scopus 로고
    • Physiological properties and functions of intracellular fatty acid-binding proteins
    • Coe NR & Bernlohr DA (1998) Physiological properties and functions of intracellular fatty acid-binding proteins. Biochim Biophys Acta 1391, 287-306.
    • (1998) Biochim Biophys Acta , vol.1391 , pp. 287-306
    • Coe, N.R.1    Bernlohr, D.A.2
  • 10
    • 0036812958 scopus 로고    scopus 로고
    • New insights into the fatty acid-binding protein (FABP) family in the small intestine
    • Besnard P, Niot I, Poirier H, Clement L & Bernard A (2002) New insights into the fatty acid-binding protein (FABP) family in the small intestine. Mol Cell Biochem 239, 139-147.
    • (2002) Mol Cell Biochem , vol.239 , pp. 139-147
    • Besnard, P.1    Niot, I.2    Poirier, H.3    Clement, L.4    Bernard, A.5
  • 11
    • 0028896925 scopus 로고
    • Cytoplasmic fatty acid-binding proteins: Their structure and genes
    • Veerkamp JH & Maatman RG (1995) Cytoplasmic fatty acid-binding proteins: their structure and genes. Prog Lipid Res 34, 17-52.
    • (1995) Prog Lipid Res , vol.34 , pp. 17-52
    • Veerkamp, J.H.1    Maatman, R.G.2
  • 13
    • 0030986132 scopus 로고    scopus 로고
    • The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates
    • Thompson J, Winter N, Terwey D, Bratt J & Banaszak L (1997) The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates. J Biol Chem 272, 7140-7150.
    • (1997) J Biol Chem , vol.272 , pp. 7140-7150
    • Thompson, J.1    Winter, N.2    Terwey, D.3    Bratt, J.4    Banaszak, L.5
  • 14
    • 0000844231 scopus 로고    scopus 로고
    • Isolation, amino acid sequence determination and binding properties of two fatty-acid-binding proteins from axolotl (Ambistoma mexicanum) liver. Evolutionary relationship
    • Di Pietro SM, Veerkamp JH & Santomé JA (1999) Isolation, amino acid sequence determination and binding properties of two fatty-acid-binding proteins from axolotl (Ambistoma mexicanum) liver. Evolutionary relationship. Eur J Biochem 259, 127-134.
    • (1999) Eur J Biochem , vol.259 , pp. 127-134
    • Di Pietro, S.M.1    Veerkamp, J.H.2    Santomé, J.A.3
  • 15
    • 0025783264 scopus 로고
    • Interaction of fatty acids with recombinant rat intestinal and liver fatty acid-binding proteins
    • Nemecz G, Hubbell T, Jefferson JR, Lowe JB & Schroeder F (1991) Interaction of fatty acids with recombinant rat intestinal and liver fatty acid-binding proteins. Arch Biochem Biophys 286, 300-309.
    • (1991) Arch Biochem Biophys , vol.286 , pp. 300-309
    • Nemecz, G.1    Hubbell, T.2    Jefferson, J.R.3    Lowe, J.B.4    Schroeder, F.5
  • 16
    • 0028076831 scopus 로고
    • Equilibrium constants for the binding of fatty acids with fatty acid-binding proteins from adipocyte, intestine, heart, and liver measured with the fluorescent probe ADIFAB
    • Richieri GV, Ogata RT & Kleinfeld AM (1994) Equilibrium constants for the binding of fatty acids with fatty acid-binding proteins from adipocyte, intestine, heart, and liver measured with the fluorescent probe ADIFAB. J Biol Chem 269, 23918-23930.
    • (1994) J Biol Chem , vol.269 , pp. 23918-23930
    • Richieri, G.V.1    Ogata, R.T.2    Kleinfeld, A.M.3
  • 17
    • 0034697737 scopus 로고    scopus 로고
    • cDNA sequence and tissue-specific expression of a basic liver-type fatty acid binding protein in adult zebrafish (Danio rerio)
    • Denovan-Wright EM, Pierce M, Sharma MK & Wright JM (2000) cDNA sequence and tissue-specific expression of a basic liver-type fatty acid binding protein in adult zebrafish (Danio rerio). Biochim Biophys Acta 1492, 227-232.
    • (2000) Biochim Biophys Acta , vol.1492 , pp. 227-232
    • Denovan-Wright, E.M.1    Pierce, M.2    Sharma, M.K.3    Wright, J.M.4
  • 18
    • 8444248261 scopus 로고    scopus 로고
    • Crystal structure of chicken liver basic fatty acid-binding protein complexed with cholic acid
    • Nichesola D, Perduca M, Capaldi S, Carrizo ME, Righetti PG & Monaco HL (2004) Crystal structure of chicken liver basic fatty acid-binding protein complexed with cholic acid. Biochemistry 43, 14072-14079.
    • (2004) Biochemistry , vol.43 , pp. 14072-14079
    • Nichesola, D.1    Perduca, M.2    Capaldi, S.3    Carrizo, M.E.4    Righetti, P.G.5    Monaco, H.L.6
  • 22
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22000 species of ray-finned fish
    • Taylor JS, Braasch I, Frickey T, Meyer A & Van de Peer Y (2003) Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res 13, 382-390.
    • (2003) Genome Res , vol.13 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van De Peer, Y.5
  • 25
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • Vandepoele K, De Vos W, Taylor JS, Meyer A & Van de Peer Y (2004) Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101, 1638-1643.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van De Peer, Y.5
  • 26
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Series 41, 95-98.
    • (1999) Nucleic Acids Symp Series , vol.41 , pp. 95-98
    • Hall, T.1
  • 27
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F & Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 28
    • 2942560992 scopus 로고    scopus 로고
    • Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio)
    • Liu RZ, Denovan-Wright EM, Degrave A, Thisse C, Thisse B & Wright JM (2004) Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio). Gene Expr Patterns 4, 379-387.
    • (2004) Gene Expr Patterns , vol.4 , pp. 379-387
    • Liu, R.Z.1    Denovan-Wright, E.M.2    Degrave, A.3    Thisse, C.4    Thisse, B.5    Wright, J.M.6
  • 29
    • 0021275901 scopus 로고
    • Fatty-acid-binding proteins. Occurrence of two fatty-acid-binding proteins in bovine liver cytosol and their binding of fatty acids, cholesterol, and other lipophilic ligands
    • Haunerland N, Jagschies G, Schulenberg H & Spener F (1984) Fatty-acid-binding proteins. Occurrence of two fatty-acid-binding proteins in bovine liver cytosol and their binding of fatty acids, cholesterol, and other lipophilic ligands. Hoppe Seylers Z Physiol Chem 365, 365-376.
    • (1984) Hoppe Seylers Z Physiol Chem , vol.365 , pp. 365-376
    • Haunerland, N.1    Jagschies, G.2    Schulenberg, H.3    Spener, F.4
  • 30
    • 17744410109 scopus 로고    scopus 로고
    • Insights into binding of fatty acids by fatty acid binding proteins
    • Hanhoff T, Lücke C & Spener F (2002) Insights into binding of fatty acids by fatty acid binding proteins. Mol Cell Biochem 239, 45-54.
    • (2002) Mol Cell Biochem , vol.239 , pp. 45-54
    • Hanhoff, T.1    Lücke, C.2    Spener, F.3
  • 31
    • 0027257417 scopus 로고
    • Involvement of arginine in the binding of heme and fatty acids to fatty acid-binding protein from bovine liver
    • Börchers T & Spener F (1993) Involvement of arginine in the binding of heme and fatty acids to fatty acid-binding protein from bovine liver. Mol Cell Biochem 123, 23-27.
    • (1993) Mol Cell Biochem , vol.123 , pp. 23-27
    • Börchers, T.1    Spener, F.2
  • 32
    • 0027958322 scopus 로고
    • Effect on ligand binding of arginine mutations in recombinant rat liver fatty acid-binding protein
    • Thumser AE, Evans C, Worrall AF & Wilton DC (1994) Effect on ligand binding of arginine mutations in recombinant rat liver fatty acid-binding protein. Biochem J 297, 103-107.
    • (1994) Biochem J , vol.297 , pp. 103-107
    • Thumser, A.E.1    Evans, C.2    Worrall, A.F.3    Wilton, D.C.4
  • 33
    • 0029869623 scopus 로고    scopus 로고
    • Mutations of recombinant rat liver fatty acid-binding protein at residues 102 and 122 alter its structural integrity and affinity for physiological ligands
    • Thumser AE, Voysey J & Wilton DC (1996) Mutations of recombinant rat liver fatty acid-binding protein at residues 102 and 122 alter its structural integrity and affinity for physiological ligands. Biochem J 314, 943-949.
    • (1996) Biochem J , vol.314 , pp. 943-949
    • Thumser, A.E.1    Voysey, J.2    Wilton, D.C.3
  • 34
    • 0032906887 scopus 로고    scopus 로고
    • The liver fatty acid binding protein - Comparison of cavity properties of intracellular lipid-binding proteins
    • Thompson J, Ory J, Reese-Wagoner A & Banaszak L (1999) The liver fatty acid binding protein - comparison of cavity properties of intracellular lipid-binding proteins. Mol Cell Biochem 192, 9-16.
    • (1999) Mol Cell Biochem , vol.192 , pp. 9-16
    • Thompson, J.1    Ory, J.2    Reese-Wagoner, A.3    Banaszak, L.4
  • 35
    • 0000346665 scopus 로고    scopus 로고
    • Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites
    • O'Rielly P, Hamilton L, McConnell S & Wright J (1996) Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Can J Fish Aquat Sci 53, 2292-2298.
    • (1996) Can J Fish Aquat Sci , vol.53 , pp. 2292-2298
    • O'Rielly, P.1    Hamilton, L.2    McConnell, S.3    Wright, J.4
  • 37
    • 0038340002 scopus 로고    scopus 로고
    • 435-bp liver regulatory sequence in the liver fatty acid binding protein (L-FABP) gene is sufficient to modulate liver regional expression in transgenic zebrafish
    • Her GM, Yeh YH & Wu JL (2003) 435-bp liver regulatory sequence in the liver fatty acid binding protein (L-FABP) gene is sufficient to modulate liver regional expression in transgenic zebrafish. Dev Dyn 227, 347-356.
    • (2003) Dev Dyn , vol.227 , pp. 347-356
    • Her, G.M.1    Yeh, Y.H.2    Wu, J.L.3
  • 39
    • 10644272391 scopus 로고    scopus 로고
    • Prentice Hall, Englewood Cliffs
    • Lewin B (2004) Genes VIII. Prentice Hall, Englewood Cliffs.
    • (2004) Genes VIII
    • Lewin, B.1
  • 40
    • 0019363396 scopus 로고
    • Organization and expression of eucaryotic split genes coding for proteins
    • Breathnach R & Chambon P (1981) Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem 50, 349-383.
    • (1981) Annu Rev Biochem , vol.50 , pp. 349-383
    • Breathnach, R.1    Chambon, P.2
  • 42
    • 0030669552 scopus 로고    scopus 로고
    • Amino acid sequence, binding properties and evolutionary relationships of the basic liver fatty-acid-binding protein from the catfish Rhamdia sapo
    • Di Pietro SM, Dell'Angelica EC, Veerkamp JH, Sterin-Speziale N & Santomé JA (1997) Amino acid sequence, binding properties and evolutionary relationships of the basic liver fatty-acid-binding protein from the catfish Rhamdia sapo. Eur J Biochem 249, 510-517.
    • (1997) Eur J Biochem , vol.249 , pp. 510-517
    • Di Pietro, S.M.1    Dell'Angelica, E.C.2    Veerkamp, J.H.3    Sterin-Speziale, N.4    Santomé, J.A.5
  • 43
    • 0022972341 scopus 로고
    • The nucleotide sequence of the rat liver fatty acid-binding protein gene. Evidence that exon 1 encodes an oligopeptide domain shared by a family of proteins which bind hydrophobic ligands
    • Sweetser DA, Lowe JB & Gordon JI (1986) The nucleotide sequence of the rat liver fatty acid-binding protein gene. Evidence that exon 1 encodes an oligopeptide domain shared by a family of proteins which bind hydrophobic ligands. J Biol Chem 261, 5553-5561.
    • (1986) J Biol Chem , vol.261 , pp. 5553-5561
    • Sweetser, D.A.1    Lowe, J.B.2    Gordon, J.I.3
  • 45
    • 0036845822 scopus 로고    scopus 로고
    • Splitting pairs: The diverging fates of duplicated genes
    • Prince VE & Pickett FB (2002) Splitting pairs: the diverging fates of duplicated genes. Nat Rev Genet 3, 827-837.
    • (2002) Nat Rev Genet , vol.3 , pp. 827-837
    • Prince, V.E.1    Pickett, F.B.2
  • 46
    • 0037213654 scopus 로고    scopus 로고
    • From endoderm formation to liver and pancreas development in zebrafish
    • Ober EA, Field HA & Stainier DY (2003) From endoderm formation to liver and pancreas development in zebrafish. Mech Dev 120, 5-18.
    • (2003) Mech Dev , vol.120 , pp. 5-18
    • Ober, E.A.1    Field, H.A.2    Stainier, D.Y.3
  • 47
    • 0037434880 scopus 로고    scopus 로고
    • In vivo studies of liver-type fatty acid binding protein (L-FABP) gene expression in liver of transgenic zebrafish (Danio rerio)
    • Her GM, Chiang CC, Chen WY & Wu JL (2003) In vivo studies of liver-type fatty acid binding protein (L-FABP) gene expression in liver of transgenic zebrafish (Danio rerio). FEBS Lett 538, 125-133.
    • (2003) FEBS Lett , vol.538 , pp. 125-133
    • Her, G.M.1    Chiang, C.C.2    Chen, W.Y.3    Wu, J.L.4
  • 48
    • 0021987762 scopus 로고
    • Tissue specific expression and developmental regulation of two genes coding for rat fatty acid binding proteins
    • Gordon JI, Elshourbagy N, Lowe JB, Liao WS, Alpers DH & Taylor JM (1985) Tissue specific expression and developmental regulation of two genes coding for rat fatty acid binding proteins. J Biol Chem 260, 1995-1998.
    • (1985) J Biol Chem , vol.260 , pp. 1995-1998
    • Gordon, J.I.1    Elshourbagy, N.2    Lowe, J.B.3    Liao, W.S.4    Alpers, D.H.5    Taylor, J.M.6
  • 49
    • 25944443954 scopus 로고
    • Fatty acid binding proteins
    • Kleinzeller A & Benos D, eds, Academic Press, New York
    • Börchers T & Spener F (1994) Fatty acid binding proteins. Current Topics in Membranes (Kleinzeller A & Benos D, eds), pp. 261-294. Academic Press, New York.
    • (1994) Current Topics in Membranes , pp. 261-294
    • Börchers, T.1    Spener, F.2
  • 50
    • 0042769372 scopus 로고    scopus 로고
    • Structure, linkage mapping and expression of the heart-type fatty acid-binding protein gene (fabp3) from zebrafish (Danio rerio)
    • Liu RZ, Denovan-Wright EM & Wright JM (2003) Structure, linkage mapping and expression of the heart-type fatty acid-binding protein gene (fabp3) from zebrafish (Danio rerio). Eur J Biochem 270, 3223-3234.
    • (2003) Eur J Biochem , vol.270 , pp. 3223-3234
    • Liu, R.Z.1    Denovan-Wright, E.M.2    Wright, J.M.3
  • 51
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG & Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 52
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • Shi J, Blundell TL & Mizuguchi K (2001) FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 310, 243-257.
    • (2001) J Mol Biol , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3


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