The cellular retinol-binding protein genes are duplicated and differentially transcribed in the developing and adult zebrafish (Danio rerio)

Molecular Biology and Evolution

Volumn 22, Issue 3, 2005, Pages 469-477

  Liu, Rong Zong ^a   Sun, Qian ^a   Thisse, Christine ^b   Thisse, Bernard ^b   Wright, Jonathan M ^a   Denovan Wright, Eileen M ^c  

^a DALHOUSIE UNIVERSITY   (Canada)

^b INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Gene duplication; Gene expression; Gene structure; Genome evolution; Phylogeny; Subfunctionalization

Indexed keywords

RETINOL BINDING PROTEIN;

ANIMAL TISSUE; ARTICLE; AUTORADIOGRAPHY; DUPLICATE GENE; GENE DUPLICATION; GENE STRUCTURE; GENETIC CONSERVATION; IN SITU HYBRIDIZATION; LARVAL DEVELOPMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PARALOGY; PHYLOGENETIC TREE; RADIATION HYBRID MAPPING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SYNTENY; ZEBRA FISH;

ANIMALS; FEMALE; GENE DUPLICATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HUMANS; MALE; MICE; ORGAN SPECIFICITY; RATS; RETINOL-BINDING PROTEINS; TRANSCRIPTION, GENETIC; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 14544292603     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msi030     Document Type: Article

References (40)

1. Adida, A., and F. Spener. 2002. Intracellular lipid-binding proteins and nuclear receptors involved in branched-chain fatty acid signaling. Prostaglandins Leukot. Essent. Fatty Acids 67:91-98.
2. Bashor, M. M., D. O. Toft, and F. Chytil. 1973. In vitro binding of retinol to rat-tissue components. Proc. Natl. Acad. Sci. USA 70:3483-3487.
3. Bernlohr, D. A., M. A. Simpson, A. V. Hertzel, and L. J. Banaszak. 1997. Intracellular lipid-binding proteins and their genes. Annu. Rev. Nutr. 17:277-303.
4. Besirli, C. G., T. W. Gong, and M. I. Lomax 1998. The Atp1b3 gene for Na,K-ATPase beta 3 subunit maps to mouse chromosome 9, and a related gene, Atp1b3-rs, maps to mouse chromosome 3. Mamm. Genome 9:171-172.
5. Breathnach, R., and P. Chambon. 1981. Organization and expression of eucaryotic split genes coding for proteins. Annu. Rev. Biochem. 50:349-383.
6. Calderone, V., C. Folli, A. Marchesani, R. Berni, and G. Zanotti. 2002. Identification and structural analysis of a zebrafish apo and holo cellular retinol-binding protein. J. Mol. Biol. 321: 527-535.
7. Cameron, M. C., E. M. Denovan-Wright, M. K. Sharma, and J. M. Wright. 2002. Cellular retinol-binding protein type II (CRBPII) in adult zebrafish (Danio rerio). cDNA sequence, tissue-specific expression and gene linkage analysis. Eur. J. Biochem. 269:4685-4692.
8. Costaridis, P., C. Horton, J. Zeitlinger, N. Holder, and M. Maden. 1996. Endogenous retinoids in the zebrafish embryo and adult. Dev. Dyn. 205:41-51.
9. De Baere, E., F. Speleman, N. Van Roy, A. De Paepe, and L. Messiaen. 1998a. Assignment of the cellular retinol-binding protein 1 gene (RBP1) and of the coatomer beta subunit gene (COPB2) to human chromosome band 3q23 by in situ hybridization. Cytogenet. Cell Genet. 82:226-227.
10. De Baere E., F. Speleman, N. Van Roy, K. Mortier, A. De Paepe, and L. Messiaen. 1998b. Assignment of the cellular retinol-binding protein 2 gene (RBP2) to human chromosome band 3q23 by in situ hybridization. Cytogenet. Cell Genet. 83: 240-241.
11. Fex, G., and G. Johannesson. 1984. Radioimmunological determination of cellular retinol-binding protein in human tissue extracts. Cancer Res. 44:3029-3032.
12. Folli, C., V. Calderone, S. Ottonello, A. Bolchi, G. Zanotti, M. Stoppini, and R. Berni. 2001. Identification, retinoid binding, and x-ray analysis of a human retinol-binding protein. Proc. Natl. Acad. Sci. USA 98:3710-3715.
13. Folli, C., V. Calderone, I. Ramazzina, G. Zanotti, and R. Berni. 2002. Ligand binding and structural analysis of a human putative cellular retinol-binding protein. J. Biol. Chem. 277:41970-41977.
14. Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
15. Glatz, J. F., and G. J. Vusse. 1996. Cellular fatty acid-binding proteins: their function and physiological significance. Prog. Lipid Res. 35:243-282.
16. Hamilton, L. C., and J. M. Wright. 1999. Isolation of complementary DNAs coding for a receptor for activated C kinase (RACK) from zebrafish (Danio rerio) and tilapia (Oreochromis niloticus): constitutive developmental and tissue expression. Mar. Biotechnol. (NY). 1:279-285.
17. Herr, F. M., and D. E. Ong. 1992. Differential interaction of lecithin-retinol acyltransferase with cellular retinol binding proteins. Biochemistry 31:6748-6755.
18. Hukriede, N. A., L. Joly, M. Tsang et al. (17 co-authors). 1999. Radiation hybrid mapping of the zebrafish genome. Proc. Natl. Acad. Sci. USA 96:9745-9750.
19. Liu, R-Z., E. M. Denovan-Wright, A. Degrave, C. Thisse, T. Thisse, and J. M. Wright. 2004. Spatio-temporal distribution of cellular retinol-binding protein (CRBPI and CRBPII) gene transcripts in the developing and adult zebrafish (Danio rerio). Eur. J. Biochem. 271:339-348.
20. Liu, R-Z., E. M. Denovan-Wright, and J. M. Wright. 2003a. Structure, mRNA expression and linkage mapping of the brain-type fatty acid-binding protein gene (fabpT) from zebrafish (Danio rerio). Eur. J. Biochem. 270:715-725.
21. -. 2003b. Structure, linkage mapping and expression of the heart-type fatty acid-binding protein gene (fabp3) from zebrafish (Danio rerio). Eur. J. Biochem. 270:3223-3234.
22. Livera, G., V. Rouiller-Fabre, J. Valla, and R. Habert. 2000. Effects of retinoids on meiosis in the fetal rat ovary in culture. Mol. Cell Endocrinol. 165:225-231.
23. Malik, N., V. Canfield, G. Sanchez-Watts, A. G. Watts, S. Scherer, B. G. Beatty, P. Gros, and R. Levenson. 1998. Structural organization and chromosomal localization of the human Na,K-ATPase beta 3 subunit gene and pseudogene. Mamm. Genome 9:136-143.
24. Morita, Y., and J. L. Tilly. 1999. Segregation of retinoic acid effects on fetal ovarian germ cell mitosis versus apoptosis by requirement for new micromolecular synthesis. Endocrinology 140:2696-2703.
25. Napoli, J. L. 1996. Biochemical pathways of retinoid transport, metabolism, and signal transduction. Clin. Immunol. Immunopathol. 80:S52-62.
26. -. 1999. Retinoic acid: its biosynthesis and metabolism. Prog. Nucleic Acid Res. Mol. Biol. 63:139-188.
27. Noy, N. 2000: Retinoid-binding proteins: mediators of retinoid action, Biochem. J. 348:481-495.
28. Ong, D. E. 1984. A novel retinol-binding protein from rat: purification and partial characterization. J. Biol. Chem. 259: 1476-1482.
29. Ong, D. E., M. E. Newcomer, and F. Chytil. 1994. Cellular retinoid-binding proteins. Pp. 283-317 in M. B. Sporn, A. B. Roberts, and D. S. Goodman, eds. The retinoids: biology, chemistry and medicine. Raven Press, New York.
30. Ong, D. E., and D. L. Page. 1986. Quantitation of cellular retinol-binding protein in human organs. Am. J. Clin. Nutr. 44:425-430.
31. Quandt, K., K. Frech, H. Karas, E. Wingender, and T. Werner. 1995. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:4878-4884.
32. Ross, A. C. 2000. Addressing research questions with national survey data-the relation of vitamin A status to infection and inflammation. Am. J. Clin. Nutr. 72:1069-1070.
33. Taylor, J. S., I. Braasch, T. Frickey, A. Meyer, and Van de Peer, Y. 2003. Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res. 13:382-390.
34. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
35. Thompson, J. H., J. M. Howell, and G. M. Pit. 1964. Vitamin A and reproduction in rats. Proc. R. Soc. Lond. B Biol. Sci. 159:510-535.
36. Thummel, R., L. Li., C. Tanase., M. P. Sarras Jr, and A. R. Godwin. 2004. Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role. Dev. Biol. 274:318-333.
37. Van de Peer, Y., J. S. Taylor, and A. Meyer. 2003. Are all the fishes ancient polyploids? J. Struct. Funct. Genomics 3:65-73.
38. Vogel, S., C. L. Mendelsohn, J. R. Mertz, R. Piantedosi, C. Waldburger, M. E. Gottesman, and W. S. Blaner. 2001. Characterization of a new member of the fatty acid-binding protein family that binds all-trans-retinol. J. Biol. Chem. 276: 1353-6130.
39. Whaley, S. L., V. S. Hedgpeth, C. E. Farin, N. S. Martus, F. C. L. Jayes, and J. H. Britt. 2000. Influence of vitamin A injection on oocytes development, follicular hormones and ovulation in gilts fed high-energy diets. J. Anim. Sci. 78:1598-1607.
40. Woods, I. G., P. D. Kelly, F. Chu, P. Ngo-Hazelett, Y. L. Yan, H. Huang, J. H Postlethwait, and W. S. Talbot. 2000. A comparative map of the zebrafish genome. Genome Res. 10: 1903-1914.