An electrochemical sensor for single nucleotide polymorphism detection in serum based on a triple-stem DNA probe

Journal of the American Chemical Society

Volumn 131, Issue 42, 2009, Pages 15311-15316

  Xiao, Yi ^a   Lou, Xinhui ^a   Uzawa, Takanori ^b   Plakos, Kory J I ^a   Plaxco, Kevin W ^b   Soh, H Tom ^a,b  

^a University of California   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BLOOD SERUM; COMPLEX SAMPLES; DNA PROBE; FARADAIC CURRENT; METHYLENE BLUE; PERFECTLY MATCHED; REAGENT-LESS; ROOM TEMPERATURE; ROOM TEMPERATURE DETECTION; SINGLE NUCLEOTIDE POLYMORPHISM DETECTIONS; SINGLE NUCLEOTIDES; SINGLE-STEP; STEM STRUCTURES; TARGET MODIFICATION; THEORETICAL BASIS; THERMO DYNAMIC ANALYSIS; THERMODYNAMIC CHANGES;

BODY FLUIDS; DNA; GENES; NUCLEIC ACIDS; NUCLEOTIDES; POLYMORPHISM; PROBES; SENSORS; THERMOANALYSIS; THERMODYNAMICS;

ELECTROCHEMICAL SENSORS;

METHYLENE BLUE; REAGENT;

ARTICLE; BLOOD SAMPLING; CHEMICAL BINDING; CHEMICAL LABELING; CHEMICAL MODIFICATION; DNA PROBE; ELECTROCHEMICAL DETECTION; ELECTROCHEMICAL SENSOR; ENTHALPY; ENTROPY; MOLECULAR SENSOR; PROTEIN ANALYSIS; ROOM TEMPERATURE; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; THERMODYNAMICS;

ANIMALS; BIOSENSING TECHNIQUES; CATTLE; DNA; DNA PROBES; ELECTROCHEMICAL TECHNIQUES; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 70350334146     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja905068s     Document Type: Article

References (44)

1. (a) Schork, N. J.; Fallin, D.; Lanchbury, J. S. Clin. Genet. 2000, 58, 250-264.
2. (b) McCarthy, J. J.; Hilfiker, R. Nat. Biotechnol. 2000, 18, 505-508.
3. (c) Naylo, S. L. Front. Biosci. 2007, 12, 4111-4131.
4. (d) Akerman, B. R.; Natowicz, M. R.; Kaback, M. M.; Loyer, M.; Campeau, E.; Gravel, R. A. Am. J. Hum. Genet. 1997, 60, 1099-1106.
5. (e) Luo, J. D.; Chan, E. C.; Shih, C. L.; Chen, T. L.; Liang, Y.; Hwang, T. L.; Chiou, C. C. Nucleic Acids Res. 2006, 34, e12.
6. (a) Livak, K. J.; Marmaro, J.; Todd, J. A. Nat. Genet. 1995, 9, 341-342.
7. (b) Landegren, U.; Kaiser, R.; Sanders, J.; Hood, L. Science 1988, 241, 1077-1080.
8. (c) Ficht, S.; Mattes, A.; Seitz, O. J. Am. Chem. Soc. 2004, 126, 9970-9981.
9. (a) Tyagi, S.; Kramer, F. R. Nat. Biotechnol. 1996, 14, 303-308.
10. (b) Nutiu, R.; Li, Y. F. Nucleic Acids Res. 2002, 30, e94.
11. Grossmann, T. N.; Roglin, L.; Seitz, O. Angew. Chem., Int. Ed. 2007, 46, 5223-5225.
12. (a) Xu, Y. Z.; Karalkar, N. B.; Kool, E. T. Nat. Biotechnol. 2001, 19, 148-152.
13. (b) Kolpashchikov, D. M. J. Am. Chem. Soc. 2005, 127, 12442-12443.
14. (c) Kolpashchikov, D. M. J. Am. Chem. Soc. 2006, 128, 10625-10628.
15. Bowtell, D. D. L. Nat. Genet. 1999, 21, 25-32.
16. Willner, I. Science 2002, 298, 2407-2408.
17. (a) Kelley, S. O.; Boon, E. M.; Barton, J. K.; Jackson, N. M.; Hill, M. G. Nucleic Acids Res. 1999, 27, 4830-4837.
18. (b) Boon, E. M.; Ceres, D. M.; Drummond, T. G.; Hill, M. G.; Barton, J. K. Nat. Biotechnol. 2000, 18, 1096-1100.
19. (c) Wong, E. L. S.; Gooding, J. J. Anal. Chem. 2006, 78, 2138-2144.
20. (d) Inouye, M.; Ikeda, R.; Takase, M.; Tsuri, T.; Chiba, J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 11606-11610.
21. Wakai, J.; Takagi, A.; Nakayama, M.; Miya, T.; Miyahara, T.; Iwanaga, T.; Takenaka, S.; Ikeda, Y.; Amano, M. Nucleic Acids Res. 2004, 32, e141.
22. (a) Yu, C. J.; Wan, Y. J.; Yowanto, H.; Li, J.; Tao, C. L.; James, M. D.; Tan, C. L.; Blackburn, G. F.; Meade, T. J. J. Am. Chem. Soc. 2001, 123, 11155-11161.
23. (b) Xiao, Y.; Lubin, A. A.; Baker, B. R.; Plaxco, K. W.; Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 16677-16680.
24. (c) Yamana, K.; Mitsui, T.; Yoshioka, J.; Isuno, T.; Nakano, H. Bioconjugate Chem. 1996, 7, 715-720.
25. Lubin, A. A.; Lai, R. Y.; Baker, B. R.; Heeger, A. J.; Plaxco, K. W. Anal. Chem. 2006, 78, 5671-5677.
26. (a) Xiao, Y.; Qu, X. G.; Plaxco, K. W.; Heeger, A. J. J. Am. Chem. Soc. 2007, 129, 11896-11897.
27. (b) Cash, K. J.; Heeger, A. J.; Plaxco, K. W.; Xiao, Y. Anal. Chem. 2009, 81, 656-661.
28. Sperschneider, J.; Datta, A. RNA 2008, 14, 630-640.
29. Porter, M. D.; Bright, T. B.; Allara, D. L.; Chidsey, C. E. D. J. Am. Chem. Soc. 1987, 109, 3559-3568.
30. Ricci, F.; Lai, R. Y.; Heeger, A. J.; Plaxco, K. W.; Sumner, J. J. Langmuir 2007, 23, 6827-6834.
31. Du, H.; Strohsahl, C. M.; Camera, J.; Miller, B. L.; Krauss, T. D. J. Am. Chem. Soc. 2005, 127, 7932-7940.
32. Jin, R. C.; Wu, G. S.; Li, Z.; Mirkin, C. A.; Schatz, G. C. J. Am. Chem. Soc. 2003, 125, 1643-1654.
33. Frutos, A. G.; Pal, S.; Quesada, M.; Lahiri, J. J. Am. Chem. Soc. 2002, 124, 2396-2397.
34. Aboul-ela, F.; Koh, D.; Tinoco, I.; Martin, F. H., Jr. Nucleic Acids Res. 1985, 13, 4811-4824.
35. Petruska, J.; Goodman, M. F. J. Biol. Chem. 1995, 270, 746-750.
36. Kushon, S. A.; Jordan, J. P.; Seifert, J. L.; Nielsen, H.; Nielsen, P. E.; Armitage, B. A. J. Am. Chem. Soc. 2001, 123, 10805-10813.
37. Fan, C. H.; Plaxco, K. W.; Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9134-9137.
38. Bonnet, G.; Tyagi, S.; Libchaber, A.; Kramer, F. R. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6171-6176.
39. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601-1620.
40. Xiao, Y.; Plakos, K. J. I.; Lou, X. H.; White, R. J.; Qian, J. R.; Plaxco, K. W.; Soh, H. T. Angew. Chem., Int. Ed. 2009, 48, 4354-4358.
41. Tsourkas, A.; Behlke, M. A.; Rose, S. D.; Bao, G. Nucleic Acids Res. 2003, 31, 1319-1330.
42. Pleij, C. W. A.; Rietveld, K.; Bosch, L. Nucleic Acids Res. 1985, 13, 1717-1731.
43. Bock, L. C.; Griffin, L. C.; Latham, J. A.; Vermaas, E. H.; Toole, J. J. Nature 1992, 355, 564-566.
44. Xiao, Y.; Lai, R.; Plaxco, K. W. Nat. Protoc. 2007, 2, 2875-2880.