-
1
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
-
Karas, M., Hillenkamp, F., Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal. Chem. 1988, 60, 2299-2301.
-
(1988)
Anal. Chem.
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
2
-
-
0024438708
-
Electrospray ionization for mass spectrometry of large biomolecules
-
Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F., Whitehouse, C. M., Electrospray ionization for mass spectrometry of large biomolecules. Science 1989, 246, 64-71. (Pubitemid 19252085)
-
(1989)
Science
, vol.246
, Issue.4926
, pp. 64-71
-
-
Fenn, J.B.1
Mann, M.2
Meng, C.K.3
Wong, S.F.4
Whitehouse, C.M.5
-
3
-
-
0028575316
-
Error-tolerant identification of peptides in sequence databases by peptide sequence tags
-
Mann, M., Wilm, M., Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 1994, 66, 4390-4399. (Pubitemid 124006101)
-
(1994)
Analytical Chemistry
, vol.66
, Issue.24
, pp. 4390-4399
-
-
Mann, M.1
Wilm, M.2
-
4
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., Yates, J. R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
5
-
-
0029644596
-
A method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates, J. R., Eng, J. K., McCormack, A. L., Schieltz, D., A method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem. 1995, 67, 1426-1436.
-
(1995)
Anal. Chem.
, vol.67
, pp. 1426-1436
-
-
Yates, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
6
-
-
0030026070
-
Femtomole sequencing of proteins from polyacrylamide by nano-electrospray mass spectromtry
-
DOI 10.1038/379466a0
-
Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S. et al., Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 1996, 379, 466-469. (Pubitemid 26039530)
-
(1996)
Nature
, vol.379
, Issue.6564
, pp. 466-469
-
-
Wilm, M.1
Shevchenko, A.2
Houthaeve, T.3
Breit, S.4
Schweigerer, L.5
Fotsis, T.6
Mann, M.7
-
7
-
-
0029927505
-
Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels
-
DOI 10.1021/ac950914h
-
Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal. Chem. 1996, 68, 850-858. (Pubitemid 26101214)
-
(1996)
Analytical Chemistry
, vol.68
, Issue.5
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
8
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
DOI 10.1038/415141a
-
Gavin, A. C., Bosche, M., Krause, R., Grandi, P. et al., Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415, 141-147. (Pubitemid 34059510)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.-C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.-M.9
Cruciat, C.-M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.-A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
9
-
-
0036674269
-
Large-scale proteomic analysis of the human spliceosome
-
DOI 10.1101/gr.473902
-
Rappsilber, J., Ryder, U., Lamond, A. I., Mann, M., Large-scale proteomic analysis of the human spliceosome. Genome Res. 2002, 12, 1231-1245. (Pubitemid 41264425)
-
(2002)
Genome Research
, vol.12
, Issue.8
, pp. 1231-1245
-
-
Rappsilber, J.1
Ryder, U.2
Lamond, A.I.3
Mann, M.4
-
10
-
-
0037039159
-
Directed proteomic analysis of the human nucleolus
-
DOI 10.1016/S0960-9822(01)00650-9, PII S0960982201006509
-
Andersen, J. S., Lyon, C. E., Fox, A. H., Leung, A. K. et al., Directed proteomic analysis of the human nucleolus. Curr. Biol. 2002, 12, 1-11. (Pubitemid 34063348)
-
(2002)
Current Biology
, vol.12
, Issue.1
, pp. 1-11
-
-
Andersen, J.S.1
Lyon, C.E.2
Fox, A.H.3
Leung, A.K.L.4
Lam, Y.W.5
Steen, H.6
Mann, M.7
Lamond, A.I.8
-
11
-
-
33846051741
-
MAPU: Max-planck unified database of organellar, cellular, tissue and body fluid proteomes
-
DOI 10.1093/nar/gkl784
-
Zhang, Y., Adachi, J., Olsen, J. V., Shi, R. et al., MAPU: Max- Planck unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Res. 2007, 35, D771-D779. (Pubitemid 46056308)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Zhang, Y.1
Zhang, Y.2
Adachi, J.3
Olsen, J.V.4
Shi, R.5
De Souza, G.6
Pasini, E.7
Foster, L.J.8
Macek, B.9
Zougman, A.10
Kumar, C.11
Wisniewski, J.R.12
Jun, W.13
Mann, M.14
-
12
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M., Olsen, J. V., Cox, J., Nielsen, M. L. et al., Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455, 1251-1254.
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy, L.M.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
-
13
-
-
34547572949
-
Is Proteomics the New Genomics?
-
DOI 10.1016/j.cell.2007.07.032, PII S0092867407009701
-
Cox, J., Mann, M., Is proteomics the new genomics? Cell 2007, 130, 395-398. (Pubitemid 47198310)
-
(2007)
Cell
, vol.130
, Issue.3
, pp. 395-398
-
-
Cox, J.1
Mann, M.2
-
15
-
-
0037227959
-
An efficient protein complex purification method for functional proteomics in higher eukaryotes
-
DOI 10.1038/nbt773
-
Forler, D., Kocher, T., Rode, M., Gentzel, M. et al., An efficient protein complex purification method for functional proteomics in higher eukaryotes. Nat. Biotechnol. 2003, 21, 89-92. (Pubitemid 36055834)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.1
, pp. 89-92
-
-
Forler, D.1
Kocher, T.2
Rode, M.3
Gentzel, M.4
Izaurralde, E.5
Wilm, M.6
-
16
-
-
33750456519
-
Global, in Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
-
DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
-
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B. et al., Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127, 635-648. (Pubitemid 44647421)
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
17
-
-
84934439747
-
Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins
-
Yan, W., Hwang, D., Aebersold, R., Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins. Meth. Mol. Biol. 2008, 432, 389-401.
-
(2008)
Meth. Mol. Biol.
, vol.432
, pp. 389-401
-
-
Yan, W.1
Hwang, D.2
Aebersold, R.3
-
18
-
-
0037370399
-
The study of macromolecular complexes by quantitative proteomics
-
Ranish, J. A., Yi, E. C., Leslie, D. M., Purvine, S. O. et al., The study of macromolecular complexes by quantitative proteomics. Nat. Genet. 2003, 33, 349-355.
-
(2003)
Nat. Genet.
, vol.33
, pp. 349-355
-
-
Ranish, J.A.1
Yi, E.C.2
Leslie, D.M.3
Purvine, S.O.4
-
19
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
DOI 10.1038/415180a
-
Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D. et al., Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415, 180-183. (Pubitemid 34059520)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.-L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.V.44
Figeys, D.45
Tyers, M.46
more..
-
20
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A. C., Aloy, P., Grandi, P., Krause, R. et al., Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
-
21
-
-
0347364646
-
Genome evolution reveals biochemical networks and functional modules
-
von Mering, C., Zdobnov, E. M., Tsoka, S., Ciccarelli, F. D. et al., Genome evolution reveals biochemical networks and functional modules. Proc. Natl. Acad. Sci. USA 2003, 100, 15428-15433.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15428-15433
-
-
Von Mering, C.1
Zdobnov, E.M.2
Tsoka, S.3
Ciccarelli, F.D.4
-
22
-
-
2942544498
-
Protein interaction networks from yeast to human
-
DOI 10.1016/j.sbi.2004.05.003, PII S0959440X04000776
-
Bork, P., Jensen, L. J., von Mering, C., Ramani, A. K. et al., Protein interaction networks from yeast to human. Curr. Opin. Struct. Biol. 2004, 14, 292-299. (Pubitemid 38749056)
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.3
, pp. 292-299
-
-
Bork, P.1
Jensen, L.J.2
Von Mering, C.3
Ramani, A.K.4
Lee, I.5
Marcotte, E.M.6
-
23
-
-
50249158005
-
A novel chromatographic method allows on-line reanalysis of the proteome
-
Waanders, L. F., Almeida, R., Prosser, S., Cox, J. et al., A novel chromatographic method allows on-line reanalysis of the proteome. Mol. Cell Proteomics 2008, 7, 1452-1459.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 1452-1459
-
-
Waanders, L.F.1
Almeida, R.2
Prosser, S.3
Cox, J.4
-
24
-
-
63049110388
-
Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions
-
Pan, C., Kumar, C., Bohl, S., Klingmueller, U., Mann, M., Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions. Mol. Cell Proteomics 2009, 8, 443-450.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 443-450
-
-
Pan, C.1
Kumar, C.2
Bohl, S.3
Klingmueller, U.4
Mann, M.5
-
25
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach, M., Schwanhausser, B., Thierfelder, N., Fang, Z. et al., Widespread changes in protein synthesis induced by microRNAs. Nature 2008, 455, 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
-
26
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek, D., Villen, J., Shin, C., Camargo, F. D. et al., The impact of microRNAs on protein output. Nature 2008, 455, 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
-
27
-
-
37648998629
-
Getting to the root of miRNA-mediated gene silencing
-
Eulalio, A., Huntzinger, E., Izaurralde, E., Getting to the root of miRNA-mediated gene silencing. Cell 2008, 132, 9-14.
-
(2008)
Cell
, vol.132
, pp. 9-14
-
-
Eulalio, A.1
Huntzinger, E.2
Izaurralde, E.3
-
28
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R., Weissman, J. S., Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324, 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
29
-
-
55449103144
-
Application of a translational profiling approach for the comparative analysis of CNS cell types
-
Doyle, J. P., Dougherty, J. D., Heiman, M., Schmidt, E. F. et al., Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 2008, 135, 749-762.
-
(2008)
Cell
, vol.135
, pp. 749-762
-
-
Doyle, J.P.1
Dougherty, J.D.2
Heiman, M.3
Schmidt, E.F.4
-
30
-
-
55449107738
-
A translational profiling approach for the molecular characterization of CNS cell types
-
Heiman, M., Schaefer, A., Gong, S., Peterson, J. D. et al., A translational profiling approach for the molecular characterization of CNS cell types. Cell 2008, 135, 738-748.
-
(2008)
Cell
, vol.135
, pp. 738-748
-
-
Heiman, M.1
Schaefer, A.2
Gong, S.3
Peterson, J.D.4
-
31
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B. et al., Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell Proteomics 2004, 3, 1154-1169.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
-
32
-
-
70350251827
-
Absolute quantification of proteins by LCMSE: A virtue of parallel MS acquisition
-
Silva, J. C., Gorenstein, M. V., Li, G. Z., Vissers, J. P., Geromanos, S. J., Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol. Cell Proteomics 2005.
-
(2005)
Mol. Cell Proteomics
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
Vissers, J.P.4
Geromanos, S.J.5
-
33
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
DOI 10.1073/pnas.0832254100
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., Gygi, S. P., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945. (Pubitemid 36706372)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.12
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
34
-
-
0033661851
-
Secondary ion-molecule reactions in matrix-assisted laser desorption/ionization
-
Knochenmuss, R., Stortelder, A., Breuker, K., Zenobi, R., Secondary ion-molecule reactions in matrix-assisted laser desorption/ionization. J. Mass Spectrom. 2000, 35, 1237-1245.
-
(2000)
J. Mass Spectrom.
, vol.35
, pp. 1237-1245
-
-
Knochenmuss, R.1
Stortelder, A.2
Breuker, K.3
Zenobi, R.4
-
35
-
-
0343775584
-
Ionization in matrix-assisted laser desorption/ionization: Singly charged molecular ions are the lucky survivors
-
DOI 10.1002/(SICI)1096-9888(200001)35:1<1::AID-JMS904>3.0.CO;2-0
-
Karas, M., Gluckmann, M., Schafer, J., Ionization in matrix-assisted laser desorption/ionization: singly charged molecular ions are the lucky survivors. J. Mass Spectrom. 2000, 35, 1-12. (Pubitemid 30060147)
-
(2000)
Journal of Mass Spectrometry
, vol.35
, Issue.1
, pp. 1-12
-
-
Karas, M.1
Gluckmann, M.2
Schafer, J.3
-
36
-
-
0037487098
-
Effect of different solution flow rates on analyte ion signals in nano-ESI MS, or: When does ESI turn into nano-ESI?
-
DOI 10.1016/S1044-0305(03)00128-4
-
Schmidt, A., Karas, M., Dulcks, T., Effect of different solution flow rates on analyte ion signals in nano-ESI MS, or: when does ESI turn into nano-ESI? J. Am. Soc. Mass Spectrom. 2003, 14, 492-500. (Pubitemid 36871630)
-
(2003)
Journal of the American Society for Mass Spectrometry
, vol.14
, Issue.5
, pp. 492-500
-
-
Schmidt, A.1
Karas, M.2
Dulcks, T.3
-
37
-
-
0000217562
-
Electrospray and Taylor-Cone theory, Dole's beam of macromolecules at last?
-
Wilm, M., Mann, M., Electrospray and Taylor-Cone theory, Dole's beam of macromolecules at last? Int. J. Mass Spectrom. Ion Proc. 1994, 136, 167-180.
-
(1994)
Int. J. Mass Spectrom. Ion Proc.
, vol.136
, pp. 167-180
-
-
Wilm, M.1
Mann, M.2
-
38
-
-
0035566777
-
Physical/chemical separations in the break-up of highly charged droplets from electrosprays
-
DOI 10.1016/S1044-0305(01)00222-7, PII S1044030501002227
-
Tang, K., Smith, R. D., Physical/chemical separations in the break-up of highly charged droplets from electrosprays. J. Am. Soc. Mass Spectrom. 2001, 12, 343-347. (Pubitemid 34546629)
-
(2001)
Journal of the American Society for Mass Spectrometry
, vol.12
, Issue.3
, pp. 343-347
-
-
Tang, K.1
Smith, R.D.2
-
39
-
-
0035497781
-
Practical implications of some recent studies in electrospray ionization fundamentals
-
Cech, N. B., Enke, C. G., Practical implications of some recent studies in electrospray ionization fundamentals. Mass Spectrom. Rev 2001, 20, 362-387.
-
(2001)
Mass Spectrom. Rev
, vol.20
, pp. 362-387
-
-
Cech, N.B.1
Enke, C.G.2
-
40
-
-
1942439636
-
Ultrasensitive and quantitative analyses from combined separations-mass spectrometry for the characterization of proteomes
-
Smith, R. D., Shen, Y., Tang, K., Ultrasensitive and quantitative analyses from combined separations-mass spectrometry for the characterization of proteomes. Acc. Chem. Res. 2004, 37, 269-278.
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 269-278
-
-
Smith, R.D.1
Shen, Y.2
Tang, K.3
-
41
-
-
33646583172
-
More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry
-
Luo, Q., Tang, K., Yang, F., Elias, A. et al., More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry. J. Proteome Res. 2006, 5, 1091-1097.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 1091-1097
-
-
Luo, Q.1
Tang, K.2
Yang, F.3
Elias, A.4
-
42
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
DOI 10.1021/ac026468x
-
Wang, W., Zhou, H., Lin, H., Roy, S. et al., Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal. Chem. 2003, 75, 4818-4826. (Pubitemid 37139783)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.18
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
Shaler, T.A.5
Hill, L.R.6
Norton, S.7
Kumar, P.8
Anderle, M.9
Becker, C.H.10
-
43
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
44
-
-
34247363301
-
Quantitative proteomics profiling of sarcomere associated proteins in limb and extraocular muscle allotypes
-
DOI 10.1074/mcp.M600345-MCP200
-
Fraterman, S., Zeiger, U., Khurana, T. S., Wilm, M., Rubinstein, N. A., Quantitative proteomics profiling of sarcomere associated proteins in limb and extraocular muscle allotypes. Mol. Cell Proteomics 2007, 6, 728-737. (Pubitemid 46630105)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.4
, pp. 728-737
-
-
Fraterman, S.1
Zeiger, U.2
Khurana, T.S.3
Wilm, M.4
Rubinstein, N.A.5
-
45
-
-
21744435622
-
Scoring proteomes with proteotypic peptide probes
-
DOI 10.1038/nrm1683
-
Kuster, B., Schirle, M., Mallick, P., Aebersold, R., Scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol. 2005, 6, 577-583. (Pubitemid 40943048)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.7
, pp. 577-583
-
-
Kuster, B.1
Schirle, M.2
Mallick, P.3
Aebersold, R.4
-
46
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
DOI 10.1038/nbt1275, PII NBT1275
-
Mallick, P., Schirle, M., Chen, S. S., Flory, M. R. et al., Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 2007, 25, 125-131. (Pubitemid 46098780)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.1
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.S.3
Flory, M.R.4
Lee, H.5
Martin, D.6
Ranish, J.7
Raught, B.8
Schmitt, R.9
Werner, T.10
Kuster, B.11
Aebersold, R.12
-
47
-
-
34249717879
-
A high-quality catalog of the Drosophila melanogaster proteome
-
DOI 10.1038/nbt1300, PII NBT1300
-
Brunner, E., Ahrens, C. H., Mohanty, S., Baetschmann, H. et al., A high-quality catalog of the Drosophila melanogaster proteome. Nat. Biotechnol. 2007, 25, 576-583. (Pubitemid 46834841)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.5
, pp. 576-583
-
-
Brunner, E.1
Ahrens, C.H.2
Mohanty, S.3
Baetschmann, H.4
Loevenich, S.5
Potthast, F.6
Deutsch, E.W.7
Panse, C.8
De Lichtenberg, U.9
Rinner, O.10
Lee, H.11
Pedrioli, P.G.A.12
Malmstrom, J.13
Koehler, K.14
Schrimpf, S.15
Krijgsveld, J.16
Kregenow, F.17
Heck, A.J.R.18
Hafen, E.19
Schlapbach, R.20
Aebersold, R.21
more..
-
48
-
-
54049095667
-
A database of mass spectrometric assays for the yeast proteome
-
Picotti, P., Lam, H., Campbell, D., Deutsch, E. W. et al., A database of mass spectrometric assays for the yeast proteome. Nat. Meth. 2008, 5, 913-914.
-
(2008)
Nat. Meth.
, vol.5
, pp. 913-914
-
-
Picotti, P.1
Lam, H.2
Campbell, D.3
Deutsch, E.W.4
-
49
-
-
21244443812
-
The use of proteotypic peptide libraries for protein identification
-
DOI 10.1002/rcm.1992
-
Craig, R., Cortens, J. P., Beavis, R. C., The use of proteotypic peptide libraries for protein identification. Rapid Commun. Mass Spectrom. 2005, 19, 1844-1850. (Pubitemid 40886710)
-
(2005)
Rapid Communications in Mass Spectrometry
, vol.19
, Issue.13
, pp. 1844-1850
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
50
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
DOI 10.1021/ac0498563
-
Liu, H., Sadygov, R. G., Yates, J. R., , A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201. (Pubitemid 38943698)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
51
-
-
3042781670
-
A new, tenth subunit TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group a
-
DOI 10.1038/ng1387
-
Giglia-Mari, G., Coin, F., Ranish, J. A., Hoogstraten, D. et al., A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A. Nat. Genet. 2004, 36, 714-719. (Pubitemid 38886632)
-
(2004)
Nature Genetics
, vol.36
, Issue.7
, pp. 714-719
-
-
Giglia-Mari, G.1
Coin, F.2
Ranish, J.A.3
Hoogstraten, D.4
Theil, A.5
Wijgers, N.6
Jaspers, N.G.J.7
Raams, A.8
Argentini, M.9
Van Der Spek, P.J.10
Botta, E.11
Stefanini, M.12
Egly, J.-M.13
Aebersold, R.14
Hoeijmakers, J.H.J.15
Vermeulen, W.16
-
52
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
53
-
-
43049090085
-
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
-
Lange, V., Malmstrom, J. A., Didion, J., King, N. L. et al., Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol. Cell Proteomics 2008, 7, 1489-1500.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 1489-1500
-
-
Lange, V.1
Malmstrom, J.A.2
Didion, J.3
King, N.L.4
-
54
-
-
30744459634
-
Quantitative proteomic analysis of drug-induced changes in mycobacteria
-
DOI 10.1021/pr050248t
-
Hughes, M. A., Silva, J. C., Geromanos, S. J., Townsend, C. A., Quantitative proteomic analysis of drug-induced changes in mycobacteria. J. Proteome Res. 2006, 5, 54-63. (Pubitemid 43100797)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.1
, pp. 54-63
-
-
Hughes, M.A.1
Silva, J.C.2
Geromanos, S.J.3
Townsend, C.A.4
-
55
-
-
65949098656
-
Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum
-
Gilar, M., Olivova, P., Chakraborty, A. B., Jaworski, A. et al., Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum. Electrophoresis 2009.
-
(2009)
Electrophoresis
-
-
Gilar, M.1
Olivova, P.2
Chakraborty, A.B.3
Jaworski, A.4
-
56
-
-
31344449923
-
A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation
-
DOI 10.1002/pmic.200501332
-
Niggeweg, R., Kocher, T., Gentzel, M., Buscaino, A. et al., A general precursor ion-like scanning mode on quadrupole- TOF instruments compatible with chromatographic separation. Proteomics 2006, 6, 41-53. (Pubitemid 43142932)
-
(2006)
Proteomics
, vol.6
, Issue.1
, pp. 41-53
-
-
Niggeweg, R.1
Kocher, T.2
Gentzel, M.3
Buscaino, A.4
Taipale, M.5
Akhtar, A.6
Wilm, M.7
-
57
-
-
33751230224
-
Protein interaction screening by quantitative immunoprecipitation combined with knock-down (QUICK)
-
Selbach, M., Mann, M., Protein interaction screening by quantitative immunoprecipitation combined with knock-down (QUICK). Nat. Methods 2006.
-
(2006)
Nat. Methods
-
-
Selbach, M.1
Mann, M.2
-
58
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
DOI 10.1038/13732
-
Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M. et al., A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 1999, 17, 1030-1032. (Pubitemid 29474865)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
59
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
DOI 10.1006/meth.2001.1183
-
Puig, O., Caspary, F., Rigaut, G., Rutz, B. et al., The tandem affinity purification (tap) method: a general procedure of protein complex purification. Methods 2001, 24, 218-229. (Pubitemid 32846428)
-
(2001)
Methods
, vol.24
, Issue.3
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
60
-
-
34250349980
-
Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition
-
Ranish, J. A., Brand, M., Aebersold, R., Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition. Meth. Mol. Biol. 2007, 359, 17-35.
-
(2007)
Meth. Mol. Biol.
, vol.359
, pp. 17-35
-
-
Ranish, J.A.1
Brand, M.2
Aebersold, R.3
-
61
-
-
1642314524
-
A Novel Proteomic Screen for Peptide-Protein Interactions
-
DOI 10.1074/jbc.M309909200
-
Schulze, W. X., Mann, M., A novel proteomic screen for peptide-protein interactions. J. Biol. Chem. 2004, 279, 10756-10764. (Pubitemid 38372689)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.11
, pp. 10756-10764
-
-
Schulze, W.X.1
Mann, M.2
-
62
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
DOI 10.1038/nbt790
-
Blagoev, B., Kratchmarova, I., Ong, S. E., Nielsen, M. et al., A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat. Biotechnol. 2003, 21, 315-318. (Pubitemid 36314817)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.3
, pp. 315-318
-
-
Blagoev, B.1
Kratchmarova, I.2
Ong, S.-E.3
Nielsen, M.4
Foster, L.J.5
Mann, M.6
-
63
-
-
3042703022
-
Identification of TFB5, a new component of general transcription and DNA repair factor IIH
-
DOI 10.1038/ng1385
-
Ranish, J. A., Hahn, S., Lu, Y., Yi, E. C. et al., Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nat. Genet. 2004, 36, 707-713. (Pubitemid 38886631)
-
(2004)
Nature Genetics
, vol.36
, Issue.7
, pp. 707-713
-
-
Ranish, J.A.1
Hahn, S.2
Lu, Y.3
Yi, E.C.4
Li, X.-J.5
Eng, J.6
Aebersold, R.7
-
64
-
-
60649097712
-
Evolution of organelle-associated protein profiling
-
Yan, W., Aebersold, R., Raines, E. W., Evolution of organelle-associated protein profiling. J. Proteomics 2009, 72, 4-11.
-
(2009)
J. Proteomics
, vol.72
, pp. 4-11
-
-
Yan, W.1
Aebersold, R.2
Raines, E.W.3
-
65
-
-
19944426486
-
Quantitative mass spectrometry reveals a role for the GTPase Rho 1 p in actin organization on the peroxisome membrane
-
DOI 10.1083/jcb.200404119
-
Marelli, M., Smith, J. J., Jung, S., Yi, E. et al., Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. J. Cell Biol. 2004, 167, 1099-1112. (Pubitemid 40066625)
-
(2004)
Journal of Cell Biology
, vol.167
, Issue.6
, pp. 1099-1112
-
-
Marelli, M.1
Smith, J.J.2
Jung, S.3
Yi, E.4
Nesvizhskii, A.I.5
Christmas, R.H.6
Saleem, R.A.7
Tam, Y.Y.C.8
Fagarasanu, A.9
Goodlett, D.R.10
Aebersold, R.11
Rachubinski, R.A.12
Aitchison, J.D.13
-
66
-
-
0346874342
-
Proteomic characterization of the human centrosome by protein correlation profiling
-
DOI 10.1038/nature02166
-
Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P. et al., Proteomic characterization of the human centrosome by protein correlation profiling. Nature 2003, 426, 570-574. (Pubitemid 37522644)
-
(2003)
Nature
, vol.426
, Issue.6966
, pp. 570-574
-
-
Andersen, J.S.1
Wilkinson, C.J.2
Mayor, T.3
Mortensen, P.4
Nigg, E.A.5
Mann, M.6
-
67
-
-
11944274520
-
Nucleolar proteome dynamics
-
Andersen, J. S., Lam, Y. W., Leung, A. K., Ong, S. E. et al., Nucleolar proteome dynamics. Nature 2005, 433, 77-83.
-
(2005)
Nature
, vol.433
, pp. 77-83
-
-
Andersen, J.S.1
Lam, Y.W.2
Leung, A.K.3
Ong, S.E.4
-
68
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
DOI 10.1074/mcp.M400219-MCP200
-
Gruhler, A., Olsen, J. V., Mohammed, S., Mortensen, P. et al., Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell Proteomics 2005, 4, 310-327. (Pubitemid 40439774)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.3
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
Mortensen, P.4
Faergeman, N.J.5
Mann, M.6
Jensen, O.N.7
-
69
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
DOI 10.1038/nbt1005
-
Blagoev, B., Ong, S. E., Kratchmarova, I., Mann, M., Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 2004, 22, 1139-1145. (Pubitemid 39166852)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.9
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.-E.2
Kratchmarova, I.3
Mann, M.4
-
70
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park, S. K., Venable, J. D., Xu, T., Yates, J. R., 3rd, A quantitative analysis software tool for mass spectrometry-based proteomics. Nat. Methods 2008, 5, 319-322.
-
(2008)
Nat. Methods
, vol.5
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates III, J.R.4
-
71
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., Mann, M., MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
72
-
-
42249108173
-
OpenMS - An open-source software framework for mass spectrometry
-
DOI 10.1186/1471-2105-9-163
-
Sturm, M., Bertsch, A., Gropl, C., Hildebrandt, A. et al., OpenMS - an open-source software framework for mass spectrometry. BMC Bioinformatics 2008, 9, 163. (Pubitemid 351546699)
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gropl, C.3
Hildebrandt, A.4
Hussong, R.5
Lange, E.6
Pfeifer, N.7
Schulz-Trieglaff, O.8
Zerck, A.9
Reinert, K.10
Kohlbacher, O.11
-
73
-
-
38349037650
-
Isotope-labeled protein standards: Toward absolute quantitative proteomics
-
Brun, V., Dupuis, A., Adrait, A., Marcellin, M. et al., Isotope-labeled protein standards: toward absolute quantitative proteomics. Mol. Cell Proteomics 2007, 6, 2139-2149.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 2139-2149
-
-
Brun, V.1
Dupuis, A.2
Adrait, A.3
Marcellin, M.4
-
74
-
-
0348014635
-
Stable-isotope dimethyl labeling for quantitative proteomics
-
Hsu, J. L., Huang, S. Y., Chow, N. H., Chen, S. H., Stable-isotope dimethyl labeling for quantitative proteomics. Anal. Chem. 2003, 75, 6843-6852.
-
(2003)
Anal. Chem.
, vol.75
, pp. 6843-6852
-
-
Hsu, J.L.1
Huang, S.Y.2
Chow, N.H.3
Chen, S.H.4
-
75
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S., Heck, A. J., Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 2009, 4, 484-494.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
76
-
-
44449162195
-
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level
-
Hanke, S., Besir, H., Oesterhelt, D., Mann, M., Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. J. Proteome Res. 2008, 7, 1118-1130.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1118-1130
-
-
Hanke, S.1
Besir, H.2
Oesterhelt, D.3
Mann, M.4
-
77
-
-
0034234619
-
Mobility labeling for parallel CID of ion mixtures
-
DOI 10.1021/ac0000170
-
Hoaglund-Hyzer, C. S., Li, J., Clemmer, D. E., Mobility labeling for parallel CID of ion mixtures. Anal. Chem. 2000, 72, 2737-2740. (Pubitemid 30452237)
-
(2000)
Analytical Chemistry
, vol.72
, Issue.13
, pp. 2737-2740
-
-
Hoaglund-Hyzer, C.S.1
Li, J.2
Clemmer, D.E.3
-
78
-
-
44349129845
-
ITRAQPak: An R based analysis and visualization package for 8-plex isobaric protein expression data
-
DOI 10.1093/bfgp/eln007, Special Issue: Outlook and Tools to Maximize Proteomics Information
-
D'Ascenzo, M., Choe, L., Lee, K. H., iTRAQPak: an R based analysis and visualization package for 8-plex isobaric protein expression data. Brief Funct. Genom. Proteomic 2008, 7, 127-135. (Pubitemid 351728954)
-
(2008)
Briefings in Functional Genomics and Proteomics
, vol.7
, Issue.2
, pp. 127-135
-
-
D'Ascenzo, M.1
Choe, L.2
Lee, K.H.3
-
79
-
-
52649098504
-
Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer
-
Bantscheff, M., Boesche, M., Eberhard, D., Matthieson, T. et al., Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer. Mol. Cell Proteomics 2008, 7, 1702-1713.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 1702-1713
-
-
Bantscheff, M.1
Boesche, M.2
Eberhard, D.3
Matthieson, T.4
-
80
-
-
13244260803
-
A novel strategy for quantitative proteomics using isotope-coded protein labels
-
DOI 10.1002/pmic.200400873
-
Schmidt, A., Kellermann, J., Lottspeich, F., A novel strategy for quantitative proteomics using isotope-coded protein labels. Proteomics 2005, 5, 4-15. (Pubitemid 40189632)
-
(2005)
Proteomics
, vol.5
, Issue.1
, pp. 4-15
-
-
Schmidt, A.1
Kellermann, J.2
Lottspeich, F.3
-
81
-
-
0020807419
-
Preparation of stable isotope-incorporated peptide internal standards for field desorption mass spectrometry quantification of peptides in biologic tissue
-
Desiderio, D. M., Kai, M., Preparation of stable isotope-incorporated peptide internal standards for field desorption mass spectrometry quantification of peptides in biologic tissue. Biomed. Mass Spectrom. 1983, 10, 471-479.
-
(1983)
Biomed. Mass Spectrom.
, vol.10
, pp. 471-479
-
-
Desiderio, D.M.1
Kai, M.2
-
82
-
-
0038149547
-
18O exchange for comparative proteomics: Tandem mass spectrometry comparison using MALDI-TOF, ESI-QTOF, and ESI-ion trap mass spectrometers
-
DOI 10.1016/S1044-0305(03)00207-1
-
Heller, M., Mattou, H., Menzel, C., Yao, X., Trypsin catalyzed 16O-to-18O exchange for comparative proteomics: tandem mass spectrometry comparison using MALDI-TOF, ESI-QTOF, and ESI-ion trap mass spectrometers. J. Am. Soc. Mass Spectrom. 2003, 14, 704-718. (Pubitemid 36870953)
-
(2003)
Journal of the American Society for Mass Spectrometry
, vol.14
, Issue.7
, pp. 704-718
-
-
Heller, M.1
Mattou, H.2
Menzel, C.3
Yao, X.4
-
83
-
-
1942502792
-
18O labeling for relative quantification of differential protein complex composition
-
Bantscheff, M., Dumpelfeld, B., Kuster, B., Femtomol sensitivity post-digest (18)O labeling for relative quantification of differential protein complex composition. Rapid Commun. Mass Spectrom. 2004, 18, 869-876. (Pubitemid 38520251)
-
(2004)
Rapid Communications in Mass Spectrometry
, vol.18
, Issue.8
, pp. 869-876
-
-
Bantscheff, M.1
Dumpelfeld, B.2
Kuster, B.3
-
84
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick, D. S., Gerber, S. A., Gygi, S. P., The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods 2005, 35, 265-273.
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
|