MiRNA and neurons

International Journal of Neuroscience

Volumn 119, Issue 11, 2009, Pages 1995-2016

  Trivedi, S ^a   Ramakrishna, G ^b  

^a JAI NARAIN VYAS UNIVERSITY   (India)

^b Center for DNA Fingerprinting and Diagnostics   (India)

Author keywords

Degeneration; Micro RNA; Neurons; Regulation; Synapse; Tissue specific

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; EXPORTIN 5; HEPATOCYTE NUCLEAR FACTOR 1ALPHA; MESSENGER RNA; MICRORNA; RNA POLYMERASE II; STAT3 PROTEIN;

ALZHEIMER DISEASE; BIOGENESIS; BRAIN DISEASE; CELL MATURATION; DENDRITE; DIGEORGE SYNDROME; DOWN SYNDROME; DRUG MECHANISM; FETUS DEVELOPMENT; FRAGILE X SYNDROME; GENE CONTROL; GENE EXPRESSION; GENE MUTATION; GENETIC TRANSCRIPTION; GILLES DE LA TOURETTE SYNDROME; HUMAN; HUNTINGTON CHOREA; MOWAT WILSON SYNDROME; NERVE CELL; NERVE CELL DIFFERENTIATION; NERVE DEGENERATION; NERVE FIBER; NERVOUS SYSTEM DEVELOPMENT; NEUROPROTECTION; NONHUMAN; PARKINSON DISEASE; PROMOTER REGION; PROTEIN BINDING; REVIEW; RNA TRANSLATION; SCHIZOPHRENIA; SYNAPSE; TRANSCRIPTION REGULATION;

ANIMALS; BRAIN; BRAIN CHEMISTRY; CELL DIFFERENTIATION; GENE EXPRESSION REGULATION; HEREDODEGENERATIVE DISORDERS, NERVOUS SYSTEM; HUMANS; MICRORNAS; NEUROGENESIS; NEURONS; RNA, MESSENGER;

EID: 70350060445     PISSN: 00207454     EISSN: 15635279     Source Type: Journal    
DOI: 10.1080/00207450903139788     Document Type: Review

References (81)

1. Baskerville, S., & Bartel, D. P. (2005). Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA, 11(3), 241-247.
2. Beveridge,N. J., Tooney, P. A., Carroll, A. P., Gardiner, E., Bowden, N., Scott, R. J., et al. (2008). Dysregulation of miRNA 181b in the temporal cortex in schizophrenia. Human Molecular Genetics, 17(8), 1156-1168.
3. Bilen, J., Liu, N., Burnett, B. G., Pittman, R. N., & Bonini, N. M. (2006). MicroRNA pathways modulate polyglutamine-induced neurodegeneration. Molecular Cell, 24(1), 157-163.
4. Borchert, G.M., Lanier,W., & Davidson, B. L. (2006). RNA polymerase III transcribes human microRNAs. Nature Structure Molecular Biology, 13(12), 1097-1101.
5. Cao, X., Pfaff, S. L., & Gage, F. H. (2007). A functional study of miR-124 in the developing neural tube. Genes and Development, 21(5), 531-536.
6. Chang, S., Johnston, R. J., Jr., Frokjaer-Jensen, C., Lockery, S., & Hobert, O. (2004).MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode. Nature, 430, 785-789.
7. Choi, P. S., Zakhary, L., Choi, W. Y., Caron, S., Alvarez-Saavedra, E., Miska, E. A., et al. (2008). Members of the miRNA-200 family regulate olfactory neurogenesis. Neuron, 57(1), 41-55.
8. Christoffersen, N. R., Silahtaroglu, A., Orom, U. A., Kauppinen, S., & Lund, A. H. (2007). miR-200b mediates post-transcriptional repression of ZFHX1B. RNA, 13(8), 1172-1178.
9. Conaco, C., Otto, S., Han, J. J., & Mandel, G. (2006). Reciprocal actions of REST & a microRNA promote neuronal identity. Proceedings of the National Academy of Sciences of the United States of America, 103(7), 2422-2427.
10. Cuellar, T. L., Davis, T. H., Nelson, P. T., Loeb, G. B., Harfe, B. D., Ullian, E., et al. (2008). Dicer loss in striatal neurons produces behavioral and neuroanatomical phenotypes in the absence of neurodegeneration. Proceedings of the National Academy of Sciences of the United States of America, 105(14), 5614-5619.
11. Cullen, B. R. (2004). Transcription and processing of human microRNA precursors 1. Molecular Cell, 16(6), 861-865.
12. Denli, A. M., Tops, B. B., Plasterk, R. H., Ketting, R. F., & Hannon, G. J. (2004). Processing of primary microRNAs by the microprocessor complex. Nature, 432(7014), 231-235.
13. Devor, E. J. (2006). Primate microRNAs miR-220 and miR-492 lie within processed pseudogenes. Journal of Heredity, 97(2), 186-190.
14. Dogini, D. B., Ribeiro, P. A., Rocha, C., Pereira, T. C., & Lopes-Cendes, I. (2008). MicroRNA Expression Profile in Murine central nervous system development. Journal of Mollecular Neuroscience, 35(3), 331-337.
15. Esquela-Kerscher, A., Johnson, S. M., Bai, L., Saito, K., Partridge, J., Reinert, K. L., et al. (2005). Post-embryonic expression of C. elegansmicroRNAs belonging to the lin-4 and let-7 families in the hypodermis and the reproductive system. Developmental Dynamics, 234(4), 868-877.
16. Fiore,R., Siegel,G.,&Schratt, G. (2008).MicroRNAfunction in neuronal development, plasticity and disease. Biochimica et Biophysica Acta, 1779(8), 471-478.
17. Fukuda, Y., Kawasaki, H., & Taira, K. (2005). Exploration of human miRNA target genes in neuronal differentiation. Nucleic Acids Symposium Series (Oxford), 49(1), 341-342.
18. Gao, F. B. (2008). Posttranscriptional control of neuronal development by microRNA networks. Trends in Neurosciences, 31(1), 20-26.
19. Hammond, S. M. (2006). MicroRNA therapeutics, a new niche for antisense nucleic acids. Trends in Molecular Medicine, 12, 99-101.
20. Han, J., Lee, Y., Yeom, K. H., Kim, Y. K., Jin, H., & Kim, V. N. (2004). The Drosha- DGCR8 complex in primary microRNA processing. Genes and Development, 18(24), 3016-3027.
21. Hansen, T., Olsen, L., Lindow, M., Jakobsen, K. D., Ullum, H., Jonsson, E., et al. (2007). Brain expressed microRNAs implicated in schizophrenia etiology. PLoS One, 2(9), e873.
22. H́ebert, S. S., Horŕe, K., Nicoläi, L., Papadopoulou, A. S., Mandemakers, W., Silahtaroglu, A. N., et al. (2008). Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proceedings of the National Academy of Sciences of the United States of America, 105(17), 6415-6420.
23. Hino, K., Fukao, T., & Watanabe, M. (2007). Regulatory interaction of HNF1-alpha to microRNA-194 gene during intestinal epithelial cell differentiation. Nucleic Acids Symposium Series (Oxford), (51), 415-416.
24. Inaoka, H., Fukuoka, Y., & Kohane, I. S. (2006). Lower expression of genes near microRNA in C. elegans germline. BMC Bioinformatics, 7, 112. http://dx.doi.org/10.1186/1471-2105-7-112
25. Jin, P., Alisch, R. S., & Warren, S. T. (2004). RNA and microRNAs in fragile X mental retardation. Nature Cell Biology, 6, 1048-1053.
26. John, B., Enright, A. J., Aravin, A., Tuschl, T., Sander, C., & Marks, D. S. (2004). Human MicroRNA targets. PLoS Biology, 2(11), e363.
27. Johnson, R., Zuccato, C., Belyaev, N. D., Guest, D. J., Cattaneo, E., & Buckley, N. J. (2008). A microRNA-based gene dysregulation pathway in Huntington's disease. Neurobiology of Disease, 29(3), 438-445.
28. Johnston, R. J., & Hobert, O. (2003). A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature, 426, 845-849.
29. Johnston, R. J., Jr., & Hobert, O. (2005). A novel C. elegans zinc finger transcription factor, lsy-2., required for the cell type-specific expression of the lsy-6 microRNA. Development, 132(24), 5451-5460.
30. Kapsimali, M., Kloosterman, W. P., de Bruijn, E., Rosa, F., Plasterk, R. H., & Wilson, S. W. (2007). MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system. Genome Biology, 8(8), R173.
31. Kawahara, Y., Zinshteyn, B., Chendrimada, T. P., Shiekhattar, R., & Nishikura, K. (2007). RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex. EMBO Reports, 8(8), 763-769.
32. Kiefer, J. C. (2006). microRNAs under the microscope. Developmental Dynamics, 235(3), 846-853.
33. Kim, J., Inoue, K., Ishii, J., Vanti,W. B., Voronov, S. V., Murchison, E., et al. (2007). A MicroRNA feedback circuit in midbrain dopamine neurons. Science, 317(5842), 1220-1224.
34. Kosik, K. S. (2006). The neuronal microRNA system. Nature Reviews Neuroscience, 7(12), 911-920.
35. Kosik, K. S., & Krichevsky, A.M. (2005). The elegance of theMicroRNAs: A neuronal perspective. Neuron, 47(6), 779-782.
36. Krichevsky, A. M., Sonntag, K. C., Isacson, O., & Kosik, K. S. (2006). Specific microRNAs modulate embryonic stem cell-derived neurogenesis. Stem Cells, 24(4), 857-864.
37. Kuhn, D. E., Nuovo, G. J., Martin, M. M., Malana, G. E., Pleister, A. P., Jiang, J., et al. (2008). Human chromosome 21-derived miRNAs are overexpressed in down syndrome brains and hearts. Biochemical and Biophysical Research Communications, 370(3), 473-477.
38. Kuss, A. W., & Chen, W. (2008). MicroRNAs in brain function and disease. Current Neurology and Neuroscience Reports, 8(3), 190-197.
39. Lee, R. C., Feinbaum, R. L., & Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75(5), 843-854.
40. Lee, Y., Jeon, K., Lee, J. T., Kim, S., & Kim, V. N. (2002). MicroRNA maturation, stepwise processing and subcellular localization. The EMBO Journal, 21(17), 4663-4670.
41. Lee, J., Li, Z., Brower-Sinning, R., & John, B. (2007). Regulatory circuit of human microRNA biogenesis. PLoS Computational Biology, 3(4), e67.
42. Li, L. C., Okino, S. T., Zhao, H., Pookot, D., Place, R. F., Urakami, S., et al. (2006). Small dsRNAs induce transcriptional activation in human cells. Proceedings of the National Academy of Sciences of the United States of America, 103(46), 17337-17342.
43. Lin, S. L., Miller, J. D., & Ying, S. Y. (2006). Intronic MicroRNA (miRNA). Journal of Biomedicine and Biotechnology, (4), 26818. 1-13.
44. Louro, R., Nakaya, H. I., Amaral, P. P., Festa, F., Sogayar, M. C., da Silva, A. M., et al. (2007). Androgen responsive intronic non-coding RNAs. BMC Biology, 30(5), 4. http://www.biomedcentral.com/1741-7007/5/4
45. Lugli, G., Torvik,V. I., Larson, J.,&Smalheiser, N. R. (2008). Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain. Journal of Neurochemistry, 106(2), 650-661.
46. Lytle, J. R., Yario, T. A., & Steitz, J. A. (2007). Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5- UTR as in the 3- UTR. Proceedings of the National Academy of Sciences of the United States of America, 104(23), 9667-9672.
47. Makeyev, E. V., Zhang, J., Carrasco, M. A., & Maniatis, T. (2007). The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Molecular Cell, 27(3), 435-448.
48. Mattick, J. S., & Makunin, I. V. (2006). Non-coding RNA. Human Molecular Genetics, 15(1), R17-R29.
49. McBride, J. L., Boudreau, R. L., Harpe, S. Q., Staber, P. D., Monteys, A. M., Martins, I., et al. (2008). Artificial miRNAs mitigate shRNA-mediated toxicity in the brain: Implications for the therapeutic development ofRNAi. Proceedings of the National Academy of Sciences of the United States of America, 105(15), 5868-5873.
50. Michalak, P. (2006). RNA world-the dark matter of evolutionary genomics. Journal of Evolutionary Biology, 19(6), 1768-1774.
51. Nelson, P. T., & Keller, J. N. (2007). RNA in brain disease, no longer just "the messenger in the middle." Journal of Neuropathol and Experimental Neurology, 66(6), 461-468.
52. Nelson, P. T., Wang, W. X., & Rajeev, B. W. (2008). MicroRNAs (miRNAs) in neurodegenerative diseases. Brain Pathology, 18(1), 130-138.
53. Niwa, R., Zhou, F., Li, C., & Slack, F. J. (2008). The expression of the Alzheimer's amyloid precursor protein-like gene is regulated by developmental timing microRNAs and their targets in Caenorhabditis elegans. Developmental Biology, 315(2), 418-425.
54. Obernosterer, G., Leuschner, P. J., Alenius, M., & Martinez, J. (2006). Posttranscriptional regulation of microRNA expression. RNA, 12(7), 1161-1167.
55. O'Donnell, W. T., & Warren, S. T. (2002). A decade of molecular studies of fragile X syndrome. Annual Review of Neuroscience, 25, 315-338.
56. Siman U. A., Nielsen, F. C., & Lund, A. H. (2008). MicroRNA-10a binds the 5-UTR of ribosomal protein mRNAs and enhances their translation. Molecular Cell, 30(4), 460-471.
57. Perkins, D. O., Jeffries, C. D., Jarskog, L. F., Thomson, J. M., Woods, K., Newman, M. A., et al. (2007). MicroRNA expression in the prefrontal cortex of individuals with schizophrenia & schizoaffective disorder. Genome Biology, 8(2), R27.
58. Place, R. F., Li, L. C., Pookot, D., Noonan, E. J., & Dahiya, R. (2008). MicroRNA- 373 induces expression of genes with complementary promoter sequences. Proceedings of the National Academy of Sciences of the United States of America, 105(5), 1608-1613.
59. Presutti, C., Rosati, J., Vincenti, S., & Nasi, S. (2006). Non coding RNA and brain. BMC Neuroscience, 7(1), S5.
60. Rajagopalan, R., Vaucheret, H., Trejo, J., & Bartel, D. P. (2006). A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes and Development, 20(24), 3407-3425.
61. Ramachandra, R. K., Salem,M., Gahr, S., Rexroad, C. E., III.,&Yao, J. (2008). Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss), their expression during early embryonic development. BMC Developmental Biology, 8, 41. http://www.biomedcentral.com/1471-213X/8/41
62. Reinhart, B. J., Slack, F. J., Basson, M., Pasquinelli, A. E., Bettinger, J. C., Rougvie, A. E., et al. (2000). The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature, 403(6772), 901-906.
63. Rodriguez, A., Griffiths-Jones, S., Ashurst, J. L., & Bradley, A. (2004). Identification of mammalian microRNA host genes and transcription units. Genome Research, 14(10A), 1902-1910.
64. Saini, H. K., Griffiths-Jones, S., & Enright, A. J. (2007). Genomic analysis of human microRNA transcripts. Proceedings of the National Academy of Sciences of the United States of America, 104(45), 17719-17724.
65. Schratt, G. M., Tuebing, F., Nigh, E. A., Kane, C. G., Sabatini, M. E., Kiebler, M., et al. (2006). A brain-specific microRNA regulates dendritic spine development. Nature, 439(7074), 283-289.
66. Seitz, H., Royo, H., Bortolin, M. L., Lin, S. P., Ferguson-Smith, A. C., & Cavailĺe, J. (2004). A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain. Genome Research, 14(9), 1741-1748.
67. Sempere, L. F., Freemantle, S., Pitha-Rowe, I., Moss, E., Dmitrovsky, E., & Ambros, V. (2004). Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biology, 5(3), R13.
68. Silber, J., Lim, D. A., Petritsch, C., Persson, A. I., Maunakea, A. K., Yu, M., et al. (2008). miR-124 & miR-137 inhibit proliferation of glioblastoma multiforme cells & induce differentiation of brain tumor stem cells. BMC Medicine, 6, 14. http://dx.doi.org/10.1186/1741-7015-6-14
69. Singh, S. K. (2007). miRNAs, from neurogeneration to neurodegeneration. Pharmacogenomics, 8(8), 971-978.
70. Smirnova, L., Grafe, A., Seiler, A., Schumacher, S., Nitsch, R.,&Wulczyn, F. G. (2005). Regulation of miRNA expression during neural cell specification. The European Journal of Neuroscience, 21(6), 1469-1477.
71. Stark, A., Brennecke, J., Bushati, N., Russell, R. B., & Cohen, S. M. (2005). Animal MicroRNAs confer robustness to gene expression & have a significant impact on 3-UTR evolution. Cell, 123(6), 1133-1146.
72. Stark, K. L., Xu, B., Bagchi, A., Lai, W. S., Liu, H., Hsu, R., et al. (2008). Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model. Nature Genetics, 40(6), 751-760.
73. Thomson, J. M., Newman, M., Parker, J. S., Morin-Kensicki, E. M., Wright, T., & Hammond, S. M. (2006). Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes and Development, 20, 2202-2207.
74. Visvanathan, J., Lee, S., Lee, B., Lee, J. W., & Lee, S. K. (2007). The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development. Genes and Development, 21(7), 744-749.
75. Wang, W. X., Rajeev, B. W., Stromberg, A. J., Ren, N., Tang, G., Huang, Q., et al. (2008). The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. The Journal of Neuroscience, 28(5), 1213-1223.
76. Wang, B., Yanez, A., & Novina, C. D. (2008). MicroRNA-repressed mRNAs contain 40S but not 60S components. Proceedings of the National Academy of Sciences of the United States of America, 105(14), 5343-5438.
77. Weber, B., Stresemann, C., Brueckner, B., & Lyko, F. (2007). Methylation of human microRNA genes in normal and neoplastic cells. Cell Cycle, 6(9), 1001-1005.
78. Woods, K., Thomson, J. M., & Hammond, S. M. (2007). Direct regulation of an oncogenic micro-RNA cluster by E2F transcription factors. The Journal of Biological Chemistry, 282(4), 2130-2134.
79. Wu, J., & Xie, X. (2006). Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. Genome Biology, 7(9), R85.
80. Yeom, K. H., Lee, Y., Han, J., Suh, M. R., & Kim, V. N. (2006). Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing. Nucleic Acids Research, 34(16), 4622-4629.
81. Zhao, J. J., Hua, Y. J., Sun, D. G., Meng, X. X., Xiao, H. S., &Ma, X. (2006). Genomewide microRNA profiling in human fetal nervous tissues by oligonucleotide microarray. Child's Nervous System, 22(11), 1419-1425.