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Volumn 99, Issue 2, 2009, Pages 79-92

Molecular cloning and sequence analysis of cyanovirin-N homology gene in Ceratopteris thalictroides

Author keywords

Bioinformatic analysis; Ceratopteris thalictroides; Chromosome walking; CVNH; Inverse PCR; Single oligonucleotide nested PCR; Thermal asymmetric interlaced PCR

Indexed keywords

ASCOMYCOTA; CERATOPTERIS THALICTROIDES; FILICOPHYTA; HUMAN IMMUNODEFICIENCY VIRUS;

EID: 70350050627     PISSN: 00028444     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (5)

References (34)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • (Pubitemid 27359211) Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25:3389-3402. (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 2
    • 7744234354 scopus 로고    scopus 로고
    • Single oligonucleotide nested PCR: A rapid method for the isolation of genes and their flanking regions from expressed sequence tags
    • DOI 10.1007/s00294-004-0524-6
    • (Pubitemid 39462393) Antal, Z., C. Rascle, M. Fevre and C. Bruel. 2004. Single oligonucleotide nested PCR: a rapid method for the isolation of genes and their flanking regions from expressed sequence tags. Curr. Genetics 46:240-246. (Pubitemid 39462393)
    • (2004) Current Genetics , vol.46 , Issue.4 , pp. 240-246
    • Antal, Z.1    Rascle, C.2    Fevre, M.3    Bruel, C.4
  • 3
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
    • DOI 10.1093/bioinformatics/bti770
    • (Pubitemid 43205406) Arnold, K., L. Bordoli, J. Kopp and T. Schwede. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modeling. Bioinformatics 22:195-201. (Pubitemid 43205406)
    • (2006) Bioinformatics , vol.22 , Issue.2 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 4
    • 12344293665 scopus 로고    scopus 로고
    • The highly specific carbohydrate-binding protein cyanovirin-n: Structure, anti-hiv/ebola activity and possibilities for therapy
    • Barrientos, L. G. and A. M. Gronenborn. 2005. The highly specific carbohydrate-binding protein cyanovirin-N: structure, anti-HIV/Ebola activity and possibilities for therapy. Mini Rev. Med. Chem. 5:21-31.
    • (2005) Mini Rev. Med. Chem. , vol.5 , pp. 21-31
    • Barrientos, L.G.1    Gronenborn, A.M.2
  • 5
    • 0242586063 scopus 로고    scopus 로고
    • 1,2 and inhibits infectivity of Ebola virus
    • DOI 10.1016/S0166-35420200183-3, PII S0166354202001833
    • (Pubitemid 36507221) Barrientos, L. G., B. R. O'Keefe, M. Bray, A. Sanchez, A. M. Gronenborn and M. R. Boyd. 2003. Cyanovirin-N binds to the viral surface glycoprotein, GP l, 2 and inhibits infectivity of Ebola virus. Antivir. Res. 58:47-56. (Pubitemid 36507221)
    • (2003) Antiviral Research , vol.58 , Issue.1 , pp. 47-56
    • Barrientos, L.G.1    O'Keefe, B.R.2    Bray, M.3    Sanchez, A.4    Gronenborn, A.M.5    Boyd, M.R.6
  • 7
    • 0035028207 scopus 로고    scopus 로고
    • Cyanovirin-N defines a new class of antiviral agent targeting n-linked, high-mannose glycans in an oligosaccharide-specific manner
    • Bolmstedt, A. J., B. R. O'Keefe, S. R. Shenoy, J. B. McMahon and M. R. Boyd. 2001. Cyanovirin-N defines a new class of antiviral agent targeting N-linked, high-mannose glycans in an oligosaccharide-specific manner. Mol. Pharmacol. 59:949-954.
    • (2001) Mol. Pharmacol. , vol.59 , pp. 949-954
    • Bolmstedt, A.J.1    O'Keefe, B.R.2    Shenoy, S.R.3    McMahon, J.B.4    Boyd, M.R.5
  • 11
    • 70350055881 scopus 로고    scopus 로고
    • The pymol molecular graphics system. Delano scientific
    • Ca
    • Delano, W. L. 2002. The PyMOL molecular graphics system. DeLano Scientific, Palo Alto, CA.http://www.pymol.org.
    • (2002) Palo Alto
    • Delano, W.L.1
  • 12
    • 0043122944 scopus 로고    scopus 로고
    • ExPASy: The proteomics server for in-depth protein knowledge and analysis
    • DOI 10.1093/nar/gkg563
    • (Pubitemid 37442246) Gasteiger, E., A. Gattiker, C. Hoogland, I. Ivanyi, R. D. Appel and A. Bairoch. 2003. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucl. Acids Res. 31:3784-3788. (Pubitemid 37442246)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3784-3788
    • Gasteiger, E.1    Gattiker, A.2    Hoogland, C.3    Ivanyi, I.4    Appel, R.D.5    Bairoch, A.6
  • 14
    • 0029595442 scopus 로고
    • SOPMA: Significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments
    • (Pubitemid 26032758) Geourjon, C. and G. Deleage. 1995. SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 11:681-684. (Pubitemid 26032758)
    • (1995) Computer Applications in the Biosciences , vol.11 , Issue.6 , pp. 681-684
    • Geourjon, C.1    Deleage, G.2
  • 16
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • DOI 10.1093/bioinformatics/15.4.305
    • (Pubitemid 29213756) Gouet, P., E. Courcelle, D. I. Stuart and F. Metoz. 1999. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15:305-308. (Pubitemid 29213756)
    • (1999) Bioinformatics , vol.15 , Issue.4 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4
  • 17
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
    • Guex, N. and M. C. Peitsch. 1997. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18:2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 18
    • 0031559765 scopus 로고    scopus 로고
    • Isolation, primary sequence determination, and disulfide bond structure of cyanovirin-N, an anti-HIV (Human Immunodeficiency Virus) protein from the cyanobacterium Nostoc ellipsosporum
    • DOI 10.1006/bbrc.1997.7203
    • (Pubitemid 27453305) Gustafson, K. R., R. C. Sovvder, L. E. Henderson, J. H. Cardellina, J. B. McMahon, U. Rajamani, L. K. Pannell and M. R. Boyd. 1997. Isolation, primary sequence determination, and disulfide bond structure of cyanovirin-N, an anti-HIV (human immunodeficiency virus) protein from the cyanobacterium Nostoc ellipsosporum. Biochem. Biophys. Res. Commun. 238:223-228. (Pubitemid 27453305)
    • (1997) Biochemical and Biophysical Research Communications , vol.238 , Issue.1 , pp. 223-228
    • Gustafson, K.R.1    Sowder II, R.C.2    Henderson, L.E.3    Cardellina II, J.H.4    McMahon, J.B.5    Rajamani, U.6    Pannell, L.K.7    Boyd, M.R.8
  • 19
    • 33748740828 scopus 로고    scopus 로고
    • Cyanovirin-N inhibits hepatitis C virus entry by binding to envelope protein glycans
    • DOI 10.1074/jbc.M602431200
    • (Pubitemid 44401904) Helle, F., C. Wychows, N. Vu-Dac, K. R. Gustafson, C. Voisset and J. Dubuisson. 2006. Cyanovirin-N inhibits hepatitis C virus entry by binding to envelope protein glycans. J. Biol. Chem. 281:25177-25183. (Pubitemid 44401904)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.35 , pp. 25177-25183
    • Helle, F.1    Wychowski, C.2    Vu-Dac, N.3    Gustafson, K.R.4    Voisset, C.5    Dubuisson, J.6
  • 20
    • 41449109826 scopus 로고    scopus 로고
    • The evolutionarily conserved family of cyanovirin-N homologs: Structures and carbohydrate specificity
    • Koharudin, L. M., A. R. Viscomi, J. G. Jee, S. Ottonello and A. M. Gronenborn. 2008. The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity. Structure 16:570-584.
    • (2008) Structure , vol.16 , pp. 570-584
    • Koharudin, L.M.1    Viscomi, A.R.2    Jee, J.G.3    Ottonello, S.4    Gronenborn, A.M.5
  • 21
    • 0033061571 scopus 로고    scopus 로고
    • Initiation of translation in prokaryotes and eukaryotes
    • DOI 10.1016/S0378-1119(99)00210-3, PII S0378111999002103
    • (Pubitemid 29298181) Kozak, M. 1999. Initiation of translation in prokaryotes and eukaryotes. Gene 234:187-208. (Pubitemid 29298181)
    • (1999) Gene , vol.234 , Issue.2 , pp. 187-208
    • Kozak, M.1
  • 22
    • 0028949381 scopus 로고
    • Thermal asymmetric interlaced pcr: Automatable amplification and sequencing of insert end fragments from PI and yac clones for chromosome walking
    • Liu, Y. G. and R. F. Whittier. 1995. Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from Pi and YAC clones for chromosome walking. Genomics 25:674-681.
    • (1995) Genomics , vol.25 , pp. 674-681
    • Liu, Y.G.1    Whittier, R.F.2
  • 26
    • 0030203863 scopus 로고    scopus 로고
    • Tree view: An application to display Phylogenetic trees on personal computers
    • Page, R. D. 1996. Tree View: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 27
    • 24644437812 scopus 로고    scopus 로고
    • The anti-HIV cyanovirin-N domain is evolutionarily conserved and occurs as a protein module in eukaryotes
    • Percudani, R., B. Montanini and S. Ottonello. 2005. The anti-HIV cyanovirin-N domain is evolutionarily conserved and occurs as a protein module in eukaryotes. Proteins 60:670-678.
    • (2005) Proteins , vol.60 , pp. 670-678
    • Percudani, R.1    Montanini, B.2    Ottonello, S.3
  • 28
    • 13244272406 scopus 로고    scopus 로고
    • Modeling the tertiary structure of a maize (zea mays ssp. Mays) non-symbiotic hemoglobin
    • Saenz-Rivera, J., G. Sarath and R. Arredondo-Peter. 2004. Modeling the tertiary structure of a maize (Zea mays ssp. mays) non-symbiotic hemoglobin. Plant Physiol. Biochem. 42:891-897.
    • (2004) Plant Physiol. Biochem. , vol.42 , pp. 891-897
    • Saenz-Rivera, J.1    Sarath, G.2    Arredondo-Peter, R.3
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing Phylogenetic trees
    • Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: An automated protein homology-modeling server
    • DOI 10.1093/nar/gkg520
    • (Pubitemid 37442164) Schwede, T., J. Kopp, N. Guex and M. C. Peitsch. 2003. SWISS-MODEL: an automated protein homology-modeling server. Nucl. Acids Res. 31:3381-3385. (Pubitemid 37442164)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 31
    • 0023058975 scopus 로고
    • A conserved au sequence from the 3' untranslated region of gm-csf mRNA mediates selective mRNA degradation
    • Shaw, G. and R. Kamen. 1986. A conserved AU sequence from the 3' untranslated region of GM-CSF mRNA mediates selective mRNA degradation. Cell 46:659-667.
    • (1986) Cell , vol.46 , pp. 659-667
    • Shaw, G.1    Kamen, R.2
  • 33
    • 0031574072 scopus 로고    scopus 로고
    • The clustal-x windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin and D. G. Higgins. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25:4876-4882.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 34
    • 0023787609 scopus 로고
    • A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences
    • (Pubitemid 18239883) Triglia, T., M. G. Peterson and D. J. Kemp. 1988. A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucl. Acids Res. 16:8186. (Pubitemid 18239883)
    • (1988) Nucleic Acids Research , vol.16 , Issue.16 , pp. 8186
    • Triglia, T.1    Peterson, M.G.2    Kemp, D.J.3


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