Constrained evolution with respect to gene overlap of hepatitis B virus

Journal of Molecular Evolution

Volumn 44, Issue SUPPL. 1, 1997, Pages

  Mizokami, Masashi ^a   Orito, Etsuro ^a   Ohba, Ken Ichi ^a   Ikeo, Kazuho ^b   Lau, Johnson Y N ^c   Gojobori, Takashi ^b  

^a NAGOYA CITY UNIV MEDICAL SCHOOL   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c UNIVERSITY OF FLORIDA   (United States)

Author keywords

Constrained evolution; Genetic classification; Hepatitis B virus; Overlapping gene

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; DNA VIRUS; EVOLUTION; GENOME; HEPATITIS B VIRUS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PROTEIN ANALYSIS;

DNA VIRUSES; HEPADNAVIRIDAE; HEPATITIS B VIRUS;

EID: 0031030479     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/pl00000061     Document Type: Article

References (32)

1. Bancroft WH, Mundin FK, Russel PK (1972) Detection of additional antigenic determinants of hepatitis B antigen. J Immunol 109:842-848
2. Bichiko V, Dreilina D, Pushko P, Pumpen P, Gren E (1985) Subtype ayw variant of hepatitis B virus. FEBS Lett 185:208-212
3. Fujiyama A, Miynohara A, Nozaki C, Yoneyama T, Ohomo N, Matsubara K (1983) Cloning and structural analyses of hepatitis B virus DNA, subtype adr. Nucleic Acids Res 11:4601-4610
4. Gailbert F, Mandert E, Fitoussi I, Tiollais P, Charnay P (1979) Nucleotide sequence of the hepatitis B virus genome (subtype ayw) cloned in E. coli. Nature 281:646-650
5. Gan ZM, Chu M, Shen L, Qian S, Li Z (1987) The complete nucleotide sequence of the cloned DNA of hepatitis B virus subtype adr in pADR-1. Sci China B 30:507-521
6. Gojobori T, Yokoyama S (1985) Rates of evolution of the retroviral oncogene of Moloney murine sarcoma virus and of its cellular homologues. Proc Natl Acad Sci USA 82:4198-4201
7. Gojobori T, Ishii K, Nei M (1982) Estimation of average number of nucleotide substitutions when the rate of substitution varies with nucleotide. J Mol Evol 18:414-423
8. Gojobori T, Moriyama EN, Kimura M (1990) Molecular clock of viral evolution and neutral theory. Proc Natl Acad Sci USA 87:10015-10018
9. Kobayashi M, Koide K (1984) Complete nucleotide sequence of hepatitis B virus DNA of subtype adr its conserved gene organization. Gene 30:227-232
10. Kodama K, Ogasawara K, Yoshioka H, Murakami S (1985) Nucleotide sequence of woodchuck hepatitis virus genome: evolution relationship between hepadnaviruses. J Virol 56:978-986
11. Le Bouvier GL (1971) The heterogeneity of Australia antigen. Infect Dis 123:671-675
12. Miller RH, Robinson WS (1986) Common evolutionary origin of hepatitis B virus and retroviruses. Proc Natl Acad Sci USA 83:2531-2535
13. Miller RH, Kaneko S, Chung TC, Giron R, Purcell RH (1989) Compact organization of the hepatitis B virus genome. Hepatology 9:322-327
14. Miyata T, Yasunaga I (1978) Evolution of overlapping genes. Nature 272:532-535
15. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, pp 293-298
16. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
17. Nordenfelt E, Le Bouvier G (1973) Hepatitis B antigen with both d and y specificities on the same particles. Intervirology 2:65-74
18. Okamoto H, Mayumi M (1988) Hepatitis B virus: the genome structure of hepatitis B virus. Liver II:653-661, Dobun Shoin, Tokyo (in Japanese)
19. Okamoto H, Imai M, Shimozaki M, Hoshino Y, Iizuka H, Gotanda T, Tsuda F, Miyakawa Y, Mayumi M (1986) Nucleotide sequence of a cloned hepatitis B virus genome, subtype ayr: comparison with genomes of the other three subtypes. J Gen Virol 67:2305-2314
20. Okamoto H, Imai M, Tsuda F, Tanaka T, Miyakawa Y, Mayumi M (1987) Point mutation in the S gene of hepatitis B virus for a d/y or w/r subtypic change in two blood donors carrying a surface antigen of compound subtype adyr or adwr. J Virol 61:3030-3034
21. Okamoto H, Tsuda F, Sastrosoewignjo R, Imai M, Miyakawa Y, Mayumi M (1988) Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J Gen Virol 69:2575-2583
22. Ono Y, Onda H, Sasada R, Igarashi K, Sugino Y, Nishioka K (1983) The complete nucleotide sequences of the cloned hepatitis B virus DNA; subtype adr and adw. Nucleic Acids Res 11:1747-1757
23. Onto E, Mizokami M, Ina Y, Moriyama NE, Kameshima N, Yamamoto M, Gojobori T (1989) Host-independent evolution and a genetic classification of the hepadnavirus family based on nucleotide sequences. Proc Natl Acad Sci USA 86:7059-7062
24. Pasek M, Goto T, Giabert W, Zink B, Schaller H, Mackay P, Leadbetter G, Murray K (1979) Hepatitis B virus genes and their expression in E. coli. Nature 282:575-579
25. Pugh JC, Weber C, Houston H, Murray K (1986) Expression of the X gene of hepatitis B virus. J Med Virol 20:229-246
26. Qi Z, Van J, Xiong W, Juan J, Sun S, Shue C, Cai LAN (1988) The complete nucleotide sequence of hepatitis B virus subtype adr in clone NC-1. Sci China B 31:1300-1304 (in Chinese)
27. Radziwill G, Tucker W, Schaller H (1990) Mutational analysis of the hepatitis B virus P gene product: domain structure and RNase H activity. J Virol 64:613-620
28. Rho H, Kim K, Hyun S, Kim Y (1989) The nucleotide sequence and reading frames of a mutant hepatitis B virus subtype adr. Nucleic Acids Res 17:2124
29. Saitou N, Nei M (1987) The neighbour-joining methods: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406-425
30. Toh H, Hayashida H, Miyata T (1983) Sequence homology between retroviral reverse transcriptase and putative polymerase of hepatitis B virus and cauliflower mosaic virus. Nature 305:827-829
31. Valenzuela P, Quiroga M, Zalaivar J, Gray P, Rutter WJ (1980) The nucleoride sequence of the hepatitis B viral genome and the identification of the major viral genes. In: Fields B, Jaenisch R, Fox CF (eds) Animal virus genetics. Academic Press, New York, pp 57-70
32. Vaudin M, Wolstenholme AJ, Tsiquaye KN, Zuckerman AJ, Harison TJ (1988) The complete nucleotide sequence of the genome of a hepatitis B virus isolated from a naturally infected chimpanzee. J Gen Virol 69:1383-1389