In vitro analysis of an RNA binding site within the N-terminal 30 amino acids of the Southern cowpea mosaic virus coat protein

Virology

Volumn 286, Issue 2, 2001, Pages 317-327

  Lee, Sook Kyung ^a   Hacker, David L ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; RECOMBINANT PROTEIN;

ALPHA HELIX; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CIRCULAR DICHROISM; CONTROLLED STUDY; ESCHERICHIA COLI; GENE DELETION; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN RNA BINDING; RNA BINDING; RNA SEQUENCE; VIRUS PARTICLE;

COWPEA MOSAIC VIRUS; ESCHERICHIA COLI; RNA VIRUSES; SOUTHERN COWPEA MOSAIC VIRUS;

EID: 0035422697     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2001.0979     Document Type: Article

References (41)

1. Structure of southern bean mosaic virus at 2.8 Å resolution
2. Complete nucleotide sequence of brome mosaic virus RNA3
3. α helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex
4. Arginine-mediated RNA recognition: The arginine fork
5. Molecular studies on bromovirus capsid protein. VI. Contributions of the N-terminal arginine-rich motif of BMV capsid protein to virion stability and RNA packaging
6. Molecular studies on bromovirus capsid protein. VII. Selective packaging of BMV RNA4 by specific N-terminal arginine residues
7. Crystal structure of a conserved ribosomal protein-RNA complex
8. Complete nucleotide sequences of the coat protein messenger RNAs of brome mosaic virus and cowpea chlorotic mottle virus
9. Particle polymorphism caused by deletion of a peptide molecular switch in a quasiequivalent icosahedral virus
10. Themes in RNA-protein recognition
11. Assembly and crystallization of a T = 1 icosahedral particle from trypsinized southern bean mosaic virus coat protein
12. Ordered duplex RNA controls capsid architecture in an icosahedral animal virus
13. Identification of a coat protein binding site on southern bean mosaic virus RNA
14. Tomato bushy stunt virus at 2.9 Å resolution
15. Amino acid sequence of southern bean mosaic virus coat protein and its relationship to the three-dimensional structure of the virus
16. Structure and assembly of turnip crinkle virus. I. X-ray crystallographic structure analysis at 3.2 Å resolution
17. Gene splicing by overlap extension: Tailor-made genes using the polymerase chain reaction
18. The sobemovirus group
19. A neutron scattering study of the structure of compact and swollen forms of southern bean mosaic virus
20. Rapid and efficient site-specific mutagenesis without phenotypic selection
21. NMR structure of the bacteriophage lambda N peptide/boxB RNA complex recognition of a GNRA fold by an arginine-rich motif
22. Development of the multiple sequence approximation within the AGADIR model of α-helix formation: Comparison with zimm-bragg and lifson-roig formalisms
23. Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
24. Molecular studies on bromovirus capsid protein. II. Functional analysis of the amino-terminal arginine-rich motif and its role in encapsidation, movement, and pathology
25. Subunit interactions in southern bean mosaic virus
26. Effects of deletions in the N-terminal basic arm of brome mosaic virus coat protein on RNA packaging and systemic infection
27. Identification of regions of brome mosaic virus coat protein chemically cross-linked in situ to viral RNA
28. Refined structure of southern bean mosaic virus at 2.9 Å resolution
29. The 105-kDa polyprotein of southern bean mosaic virus is translated by scanning ribosomes
30. Quantitative analysis of the binding of turnip crinkle virus coat protein to RNA fails to demonstrate binding specificity but reveals a highly cooperative assembly interaction
31. Structure and assembly of turnip crinkle virus. II. Mechanism of reassembly in vitro
32. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy
33. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
34. Conformational studies on a peptide fragment representing the RNA-binding N-terminus of a viral coat protein using circular dichroism and NMR spectroscopy
35. Conformation of a pentacosapeptide representing the RNA-binding N-terminus of cowpea chlorotic mottle virus coat protein in the presence of oligophosphates: A two-dimensional proton nuclear magnetic resonance and distance geometry study
36. Role of the N-terminal part of the coat protein in the assembly of cowpea chlorotic mottle virus. A 500 MHz proton nuclear magnetic resonance study and structural calculations
37. Evidence for specificity in the encapsidation of sindbis virus RNAs
38. The structure of cucumber mosaic virus: Cryoelectron microscopy, X-ray crystallography, and sequence analysis
39. Sequence and organization of southern bean mosaic virus genomic RNA
40. Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex
41. In vitro assembly of cowpea chlorotic mottle virus from coat protein expressed in Escherichia coli and in vitro-transcribed viral cDNA