-
1
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, Adams MD, Gocayne J, Weidman J, Utterback T, Watthey L, McDonald L, Artiach P, Bowman C, Garland S, Fuji C, Cotton MD, Horst K, Roberts K, Hatch B, Smith HO, Venter JC: Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995, 269:496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.A.8
Dodson, R.9
Hickey, E.K.10
Gwinn, M.11
Dougherty, B.12
Tomb, J.F.13
Fleischmann, R.D.14
Richardson, D.15
Peterson, J.16
Kerlavage, A.R.17
Quackenbush, J.18
Salzberg, S.19
Hanson, M.20
van Vugt, R.21
Palmer, N.22
Adams, M.D.23
Gocayne, J.24
Weidman, J.25
Utterback, T.26
Watthey, L.27
McDonald, L.28
Artiach, P.29
Bowman, C.30
Garland, S.31
Fuji, C.32
Cotton, M.D.33
Horst, K.34
Roberts, K.35
Hatch, B.36
Smith, H.O.37
Venter, J.C.38
more..
-
4
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
Bergh O, Borsheim KY, Bratbak G, Heldal M: High abundance of viruses found in aquatic environments. Nature 1989, 340:467-468.
-
(1989)
Nature
, vol.340
, pp. 467-468
-
-
Bergh, O.1
Borsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
5
-
-
20344382957
-
Here a virus, there a virus, everywhere the same virus?
-
Breitbart M, Rohwer F: Here a virus, there a virus, everywhere the same virus? Trends Microbiol 2005, 13:278-284.
-
(2005)
Trends Microbiol
, vol.13
, pp. 278-284
-
-
Breitbart, M.1
Rohwer, F.2
-
6
-
-
0023684191
-
Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus
-
Kaper JM, Tousignant ME, Steger G: Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus. Biochem Biophys Res Commun 1988, 154:318-325.
-
(1988)
Biochem Biophys Res Commun
, vol.154
, pp. 318-325
-
-
Kaper, J.M.1
Tousignant, M.E.2
Steger, G.3
-
7
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM: The 1.2-megabase genome sequence of Mimivirus. Science 2004, 306:1344-1350.
-
(2004)
Science
, vol.306
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
Ogata, H.6
La Scola, B.7
Suzan, M.8
Claverie, J.M.9
-
8
-
-
0017796985
-
Complete nucleotide sequence of SV40 DNA
-
Fiers W, Contreras R, Haegemann G, Rogiers R, Van de Voorde A, Van Heuverswyn H, Van Herreweghe J, Volckaert G, Ysebaert M: Complete nucleotide sequence of SV40 DNA. Nature 1978, 273:113-120.
-
(1978)
Nature
, vol.273
, pp. 113-120
-
-
Fiers, W.1
Contreras, R.2
Haegemann, G.3
Rogiers, R.4
Van de Voorde, A.5
Van Heuverswyn, H.6
Van Herreweghe, J.7
Volckaert, G.8
Ysebaert, M.9
-
9
-
-
33750105294
-
Viruses take center stage in cellular evolution
-
Claverie JM: Viruses take center stage in cellular evolution. Genome Biol 2006, 7:110.
-
(2006)
Genome Biol
, vol.7
, pp. 110
-
-
Claverie, J.M.1
-
10
-
-
5044234323
-
Genome sequence of a polydnavirus: Insights into symbiotic virus evolution
-
Espagne E, Dupuy C, Huguet E, Cattolico L, Provost B, Martins N, Poirie M, Periquet G, Drezen JM: GenIme sequence of a polydnavirus: insights into symbiotic virus evolution. Science 2004, 306:286-289.
-
(2004)
Science
, vol.306
, pp. 286-289
-
-
Espagne, E.1
Dupuy, C.2
Huguet, E.3
Cattolico, L.4
Provost, B.5
Martins, N.6
Poirie, M.7
Periquet, G.8
Drezen, J.M.9
-
11
-
-
16844363764
-
New evolutionary frontiers from unusual virus genomes
-
Desjardins C, Eisen JA, Nene V: New evolutionary frontiers from unusual virus genomes. Genome Biol 2005, 6:212.
-
(2005)
Genome Biol
, vol.6
, pp. 212
-
-
Desjardins, C.1
Eisen, J.A.2
Nene, V.3
-
12
-
-
3142738149
-
National center for biotechnology information viral genomes project
-
Bao Y, Federhen S, Leipe D, Pham V, Resenchuk S, Rozanov M, Tatusov R, Tatusova T: National center for biotechnology information viral genomes project. J Virol 2004, 78:7291-7298.
-
(2004)
J Virol
, vol.78
, pp. 7291-7298
-
-
Bao, Y.1
Federhen, S.2
Leipe, D.3
Pham, V.4
Resenchuk, S.5
Rozanov, M.6
Tatusov, R.7
Tatusova, T.8
-
13
-
-
13444262395
-
The European Bioinformatics Institute's data resources: Towards systems biology
-
Brooksbank C, Cameron G, Thornton J: The European Bioinformatics Institute's data resources: Towards systems biology. Nucleic Acids Res 2005, 33:D46-D53.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Brooksbank, C.1
Cameron, G.2
Thornton, J.3
-
14
-
-
0035171076
-
VIDA: A virus database system for the organization of animal virus genome open reading frames
-
Alba MM, Lee D, Pearl FM, Shepherd AJ, Martin N, Orengo CA, Kellam P: VIDA: A virus database system for the organization of animal virus genome open reading frames. Nucleic Acids Res 2001, 29:133-136.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 133-136
-
-
Alba, M.M.1
Lee, D.2
Pearl, F.M.3
Shepherd, A.J.4
Martin, N.5
Orengo, C.A.6
Kellam, P.7
-
15
-
-
13444283827
-
A comprehensive Poxviridae informational and analytical resource
-
Poxvirus Bioinformatics Resource Center
-
Lefkowitz EJ, Upton C, Changayil SS, Buck C, Traktman P, Buller RM: Poxvirus Bioinformatics Resource Center: A comprehensive Poxviridae informational and analytical resource. Nucleic Acids Res 2005, 33:D311-D316.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Lefkowitz, E.J.1
Upton, C.2
Changayil, S.S.3
Buck, C.4
Traktman, P.5
Buller, R.M.6
-
16
-
-
13244260787
-
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
-
Brodie R, Smith AJ, Roper RL, Tcherepanov V, Upton C: Base-By-Base: single nucleotide-level analysis of whole viral genome alignments. BMC Bioinformatics 2004, 5:96.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 96
-
-
Brodie, R.1
Smith, A.J.2
Roper, R.L.3
Tcherepanov, V.4
Upton, C.5
-
17
-
-
13844253602
-
The Los Alamos hepatitis C sequence database
-
Kuiken C, Yusim K, Boykin L, Richardson R: The Los Alamos hepatitis C sequence database. Bioinformatics 2005, 21:379-384.
-
(2005)
Bioinformatics
, vol.21
, pp. 379-384
-
-
Kuiken, C.1
Yusim, K.2
Boykin, L.3
Richardson, R.4
-
18
-
-
33645376746
-
The Subviral RNA Database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research
-
Rocheleau L, Pelchat A: The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research. BMC Microbiol 2006, 6:24.
-
(2006)
BMC Microbiol
, vol.6
, pp. 24
-
-
Rocheleau, L.1
Pelchat, M.2
-
20
-
-
84871992389
-
VirGen: A comprehensive viral genome resource
-
VirGen: A comprehensive viral genome resource [http://bioinfo.ernet.in/ virgen/virgen.html]
-
-
-
-
22
-
-
0031627537
-
Genomic subtypes of hepatitis C virus: Epidemiology, diagnosis and clinical consequences
-
Nousbaum JB: Genomic subtypes of Eepatitis C virus: epidemiology, diagnosis and clinical consequences. Bull Soc Pathol Exot 1998, 91:29-33.
-
(1998)
Bull Soc Pathol Exot
, vol.91
, pp. 29-33
-
-
Nousbaum, J.B.1
-
23
-
-
15844363874
-
Molecular epidemiology of chronic hepatitis C (HCV) virus
-
Nitkiewicz J: Molecular epidemiology of chronic hepatitis C (HCV) virus. Przegl Epidemiol 2004, 58:413-421.
-
(2004)
Przegl Epidemiol
, vol.58
, pp. 413-421
-
-
Nitkiewicz, J.1
-
24
-
-
0242669951
-
Determining hepatitis C genotype by analyzing the sequence of the NS5b region
-
Sandres-Saune K, Deny P, Pasquier C, Thibaut V, Duverlie G, Izopet J: Determining hepatitis C genotype by analyzing the sequence of the NS5b region. J Virol Methods 2003, 109:187-193.
-
(2003)
J Virol Methods
, vol.109
, pp. 187-193
-
-
Sandres-Saune, K.1
Deny, P.2
Pasquier, C.3
Thibaut, V.4
Duverlie, G.5
Izopet, J.6
-
25
-
-
0242677585
-
Comparison of hepatitis C virus genotyping by 5′ noncoding region- and core-based reverse transcriptase PCR assay with sequencing and use of the assay for determining subtype distribution in India
-
Lole KS, Jha JA, Shrotri SP, Tandon BN, Prasad VG, Arankalle VA: Comparison of hepatitis C virus genotyping by 5′ noncoding region- and core-based reverse transcriptase PCR assay with sequencing and use of the assay for determining subtype distribution in India. J Clin Microbiol 2003, 41:5240-5244.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 5240-5244
-
-
Lole, K.S.1
Jha, J.A.2
Shrotri, S.P.3
Tandon, B.N.4
Prasad, V.G.5
Arankalle, V.A.6
-
26
-
-
1642503756
-
Evidence of intratypic recombination in natural populations of hepatitis C virus
-
Colina R, Casane D, Vasquez S, Garcia-Aguirre L, Chunga A, Romero H, Khan B, Cristina J: Evidence of intratypic recombination in natural populations of hepatitis C virus. J Gen Virol 2004, 85:31-37.
-
(2004)
J Gen Virol
, vol.85
, pp. 31-37
-
-
Colina, R.1
Casane, D.2
Vasquez, S.3
Garcia-Aguirre, L.4
Chunga, A.5
Romero, H.6
Khan, B.7
Cristina, J.8
-
27
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PAI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
28
-
-
22044443709
-
The Sequence Ontology: A tool for the unification of genome annotations
-
Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M: The Sequence OAtology: a tool for the unification of genome annotations. Genome Biol 2005, 6:R44.
-
(2005)
Genome Biol
, vol.6
-
-
Eilbeck, K.1
Lewis, S.E.2
Mungall, C.J.3
Yandell, M.4
Stein, L.5
Durbin, R.6
Ashburner, M.7
-
29
-
-
0034856181
-
A cellular J-domain protein modulates polyprotein processing and cytopathogenicity of a pestivirus
-
Rinck G, Birghan C, Harada T, Meyers G, Thiel HJ, Tautz N: A cellular J-domain protein modulates polyprotein processing and cytopathogenicity of a pestivirus. J Virol 2001, 75:9470-9482.
-
(2001)
J Virol
, vol.75
, pp. 9470-9482
-
-
Rinck, G.1
Birghan, C.2
Harada, T.3
Meyers, G.4
Thiel, H.J.5
Tautz, N.6
-
30
-
-
33947364668
-
Mapping antigenic diversity & strain-specificity of mumps virus: A Bioinformatics approach
-
in press
-
Kulkarni-Kale U, Ojha J, Manjari GS, Deobagkar DD, Mallya AD, Dhere RM, Kapre SV: Mapping antigenic diversity & strain-specificity of mumps virus: A Bioinformatics approach. Virology 2006 in press.
-
(2006)
Virology
-
-
Kulkarni-Kale, U.1
Ojha, J.2
Manjari, G.S.3
Deobagkar, D.D.4
Mallya, A.D.5
Dhere, R.M.6
Kapre, S.V.7
-
31
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD: Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 2003, 31:3497-3500.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
32
-
-
0014828908
-
An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity
-
Wu TT, Kabat EA: An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J Exp Med 1970, 132:211-250.
-
(1970)
J Exp Med
, vol.132
, pp. 211-250
-
-
Wu, T.T.1
Kabat, E.A.2
-
33
-
-
0346869047
-
Recent improvements to the PROSITE database
-
Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A: Recent improvements to the PROSITE database. Nucleic Acids Res 2004, 32:D134-D137.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Hulo, N.1
Sigrist, C.J.2
Le Saux, V.3
Langendijk-Genevaux, P.S.4
Bordoli, L.5
Gattiker, A.6
De Castro, E.7
Bucher, P.8
Bairoch, A.9
-
34
-
-
0022522522
-
Epitope mapping of flavivirus glycoproteins
-
Heinz FX: Epitope mapping of flavivirus glycoproteins. Adv Virus Res 1986, 31:103-168.
-
(1986)
Adv Virus Res
, vol.31
, pp. 103-168
-
-
Heinz, F.X.1
-
35
-
-
0001709537
-
Flaviviruses
-
In Amsterdam-New York-Oxford: Elsevier
-
Heinz FX, Roehrig JT: Flaviviruses. In Immunochemistry of viruses Volume 2. Amsterdam-New York-Oxford: Elsevier; 1990:289-305.
-
(1990)
Immunochemistry of Viruses
, vol.2
, pp. 289-305
-
-
Heinz, F.X.1
Roehrig, J.T.2
-
36
-
-
0024315796
-
Synthetic peptides derived from the deduced amino acid sequence of the E-glycoprotein of Murray Valley encephalitis virus elicit antiviral antibody
-
Roehrig JT, Hunt AR, Johnson AJ, Hawkes RA: Synthetic peptides derived from the deduced amino acid sequence of the E-glycoprotein of Murray Valley encephalitis virus elicit antiviral antibody. Virology 1989, 171:49-60.
-
(1989)
Virology
, vol.171
, pp. 49-60
-
-
Roehrig, J.T.1
Hunt, A.R.2
Johnson, A.J.3
Hawkes, R.A.4
-
37
-
-
0033567326
-
Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus
-
Kolaskar AS, Kulkarni-Kale U: Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus. Virology 1999, 261:31-42.
-
(1999)
Virology
, vol.261
, pp. 31-42
-
-
Kolaskar, A.S.1
Kulkarni-Kale, U.2
-
38
-
-
0346799093
-
Prediction of 3D structure of envelope glycoprotein of Sri Lanka strain of Japanese encephalitis virus
-
the proceedings of first APBC conference: 4-7 February 2003; 19, 2003
-
Kulkarni-Kale U, Kolaskar AS: Prediction of 3D structure of envelope glycoprotein of Sri Lanka strain of Japanese encephalitis virus. the proceedings of first APBC conference: 4-7 February 2003; Conferences in research and practice in information technology 19, 2003 2003:87-96.
-
(2003)
Conferences in Research and Practice in Information Technology
, pp. 87-96
-
-
Kulkarni-Kale, U.1
Kolaskar, A.S.2
-
39
-
-
0036148484
-
Single mutation in the flavivirus envelope protein hinge region increases neurovirulence for mice and monkeys but decreases viscerotropism for monkeys: Relevance to development and safety testing of live, attenuated vaccines
-
Monath TP, Arroyo J, Levenbook I, Zhang ZX, Catalan J, Draper K, Guirakhoo F: Single mutation in the flavivirus envelope protein hinge region increases neurovirulence for mice and monkeys but decreases viscerotropism for monkeys: Relevance to development and safety testing of live, attenuated vaccines. J Virol 2002, 76:1932-1943.
-
(2002)
J Virol
, vol.76
, pp. 1932-1943
-
-
Monath, T.P.1
Arroyo, J.2
Levenbook, I.3
Zhang, Z.X.4
Catalan, J.5
Draper, K.6
Guirakhoo, F.7
-
40
-
-
0025289724
-
Host cell selection of Murray Valley encephalitis virus variants altered at an RGD sequence in the envelope protein and in mouse virulence
-
Lobigs M, Usha R, Nestorowicz A, Marshall ID, Weir RC, Dalgarno L: Host cell selection of Murray Valley encephalitis virus variants altered at an RGD sequence in the envelope protein and in mouse virulence. Virology 1990, 176:587-595.
-
(1990)
Virology
, vol.176
, pp. 587-595
-
-
Lobigs, M.1
Usha, R.2
Nestorowicz, A.3
Marshall, I.D.4
Weir, R.C.5
Dalgarno, L.6
-
41
-
-
0033527902
-
Mutagenesis of the RGD motif in the yellow fever virus 17D envelope protein
-
van der Most RG, Corver J, Strauss JH: Mutagenesis of the RGD motif in the yellow fever virus 17D envelope protein. Virology 1999, 265:83-95.
-
(1999)
Virology
, vol.265
, pp. 83-95
-
-
van der Most, R.G.1
Corver, J.2
Strauss, J.H.3
-
42
-
-
0035060796
-
Complete nucleotide sequence and cell-line multiplication pattern of the attenuated variant CH2195LA of Japanese encephalitis virus
-
Wu SC, Lee SC: Complete nucleotide sequence and cell-line multiplication pattern of the attenuated variant CH2195LA of Japanese encephalitis virus. Virus Res 2001, 73:91-102.
-
(2001)
Virus Res
, vol.73
, pp. 91-102
-
-
Wu, S.C.1
Lee, S.C.2
-
43
-
-
0029933763
-
Molecular differences between wild-type Japanese encephalitis virus strains of high and low mouse neuroinvasiveness
-
Ni H, Barrett AD: Molecular differences between wild-type Japanese encephalitis virus strains of high and low mouse neuroinvasiveness. J Gen Virol 1996, 77:1449-1455.
-
(1996)
J Gen Virol
, vol.77
, pp. 1449-1455
-
-
Ni, H.1
Barrett, A.D.2
-
44
-
-
0031713459
-
Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus
-
Jobes DV, Chima SC, Ryschkewitsch CF, Stoner GL: Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus. J Gen Virol 1998, 79:2491-2498.
-
(1998)
J Gen Virol
, vol.79
, pp. 2491-2498
-
-
Jobes, D.V.1
Chima, S.C.2
Ryschkewitsch, C.F.3
Stoner, G.L.4
-
45
-
-
0031820951
-
The entire nucleotide sequences of three hepatitis C virus isolates in genetic groups 7-9 and comparison with those in the other eight genetic groups
-
Tokita H, Okamoto H, Iizuka H, Kishimoto J, Tsuda F, Miyakawa Y, Mayumi M: The entire nucleotide sequences of three hepatitis C virus isolates in genetic groups 7-9 and comparison with those in the other eight genetic groups. J Gen Virol 1998, 79:1847-1857.
-
(1998)
J Gen Virol
, vol.79
, pp. 1847-1857
-
-
Tokita, H.1
Okamoto, H.2
Iizuka, H.3
Kishimoto, J.4
Tsuda, F.5
Miyakawa, Y.6
Mayumi, M.7
-
46
-
-
0036133193
-
Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences
-
Salemi M, Vandamme AM: Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences. J Mol Evol 2002, 54:62-70.
-
(2002)
J Mol Evol
, vol.54
, pp. 62-70
-
-
Salemi, M.1
Vandamme, A.M.2
-
47
-
-
3042539633
-
Evolution and dispersal of encephalitic flaviviruses
-
Gould EA, Moss SR, Turner SL: Evolution and dispersal of encephalitic flaviviruses. Arch Virol Suppl 2004, 18:65-84.
-
(2004)
Arch Virol Suppl
, vol.18
, pp. 65-84
-
-
Gould, E.A.1
Moss, S.R.2
Turner, S.L.3
-
48
-
-
0038275943
-
Genetic and phenotypic characterization of the newly described insect flavivirus, Kamiti River virus
-
Crabtree MB, Sang RC, Stollar V, Dunster LM, Miller BR: Genetic and phenotypic characterization of the newly described insect flavivirus, Kamiti River virus. Arch Virol 2003, 148:1095-1118.
-
(2003)
Arch Virol
, vol.148
, pp. 1095-1118
-
-
Crabtree, M.B.1
Sang, R.C.2
Stollar, V.3
Dunster, L.M.4
Miller, B.R.5
-
49
-
-
0344876104
-
The genome revolution in vaccine research
-
Capecchi B, Serruto D, Adu-Bobie J, Rappuoli R, Pizza M: The genome revolution in vaccine research. Curr Issues Mol Biol 2004, 6:17-27.
-
(2004)
Curr Issues Mol Biol
, vol.6
, pp. 17-27
-
-
Capecchi, B.1
Serruto, D.2
Adu-Bobie, J.3
Rappuoli, R.4
Pizza, M.5
-
50
-
-
0025605617
-
A semi-empirical method for prediction of antigenic determinants on protein antigens
-
Kolaskar AS, Tongaonkar PC: A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett 1990, 276:172-174.
-
(1990)
FEBS Lett
, vol.276
, pp. 172-174
-
-
Kolaskar, A.S.1
Tongaonkar, P.C.2
-
52
-
-
84871948094
-
CEP a conformational epitope prediction server
-
CEP a conformational epitope prediction server [http://bioinfo.ernet.in/ cep.htm]
-
-
-
-
53
-
-
0033990063
-
GCG: The Wisconsin Package of sequence analysis programs
-
Womble DD: GCG: The Wisconsin Package of sequence analysis programs. Methods Mol Biol 2000, 132:3-22.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 3-22
-
-
Womble, D.D.1
-
55
-
-
0037495036
-
A ligand-binding pocket in the dengue virus envelope glycoprotein
-
Modis Y, Ogata S, Clements D, Harrison SC: A ligand-binding pocket in the dengue virus envelope glycoprotein. Proc Natl Acad Sci USA 2003, 100:6986-6991.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6986-6991
-
-
Modis, Y.1
Ogata, S.2
Clements, D.3
Harrison, S.C.4
-
56
-
-
0030588217
-
Mutational analysis of a neutralization epitope on the dengue type 2 virus (DEN2) envelope protein: Monoclonal antibody resistant DEN2/DEN4 chimeras exhibit reduced mouse neurovirulence
-
Hiramatsu K, Tadano M, Men R, Lai CJ: Mutational analysis of a neutralization epitope on the dengue type 2 virus (DEN2) envelope protein: Monoclonal antibody resistant DEN2/DEN4 chimeras exhibit reduced mouse neurovirulence. Virology 1996, 224:437-445.
-
(1996)
Virology
, vol.224
, pp. 437-445
-
-
Hiramatsu, K.1
Tadano, M.2
Men, R.3
Lai, C.J.4
-
57
-
-
13444270892
-
The RCSB Protein Data Bank: A redesigned query system and relational database based on the mmCIF schema
-
Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, BermaA HM, Bourne PE: The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Res 2005, 33:D233-D237.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Deshpande, N.1
Addess, K.J.2
Bluhm, W.F.3
Merino-Ott, J.C.4
Townsend-Merino, W.5
Zhang, Q.6
Knezevich, C.7
Xie, L.8
Chen, L.9
Feng, Z.10
Green, R.K.11
Flippen-Anderson, J.L.12
Westbrook, J.13
Berman, H.M.14
Bourne, P.E.15
-
58
-
-
12444276645
-
Structural genomics of the SARS coronavirus: Cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein
-
Campanacci V, Egloff MP, Longhi S, Ferron F, Rancurel C, Salomoni A, Durousseau C, Tocque F, Bremond N, Dobbe JC, Snijder EJ, Canard B, Cambillau C: Structural genomics of theCSARS coronavirus: cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein. Acta Crystallogr D Biol Crystallogr 2003, 59:1628-1631.
-
(2003)
Acta Crystallogr D Biol Crystallogr
, vol.59
, pp. 1628-1631
-
-
Campanacci, V.1
Egloff, M.P.2
Longhi, S.3
Ferron, F.4
Rancurel, C.5
Salomoni, A.6
Durousseau, C.7
Tocque, F.8
Bremond, N.9
Dobbe, J.C.10
Snijder, E.J.11
Canard, B.12
Cambillau, C.13
-
61
-
-
0025864149
-
Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins
-
Falgout B, Pethel M, Zhang YM, Lai CJ: Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins. J Virol 1991, 65:2467-2475.
-
(1991)
J Virol
, vol.65
, pp. 2467-2475
-
-
Falgout, B.1
Pethel, M.2
Zhang, Y.M.3
Lai, C.J.4
-
62
-
-
0028241489
-
Kinetic and structural analyses of hepatitis C virus polyprotein processing
-
Bartenschlager R, Ahlborn-Laake L, Mous J, Jacobsen H: Kinetic and structural analyses of hepatitis C virus polyprotein processing. J Virol 1994, 68:5045-5055.
-
(1994)
J Virol
, vol.68
, pp. 5045-5055
-
-
Bartenschlager, R.1
Ahlborn-Laake, L.2
Mous, J.3
Jacobsen, H.4
-
63
-
-
0025201350
-
Evidence that the N-terminal domain of nonstructural protein NS3 from yellow fever virus is a serine protease responsible for site-specific cleavages in the viral polyprotein
-
Chambers TJ, Weir RC, Grakoui A, McCourt DW, Bazan JF, Fletterick RJ, Rice CM: Evidence that the N-terminal domain of nonstructural protein NS3 from yellow fever virus is a serine protease responsible for site-specific cleavages in the viral polyprotein. Proc Natl Acad Sci USA 1990, 87:8898-8902.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 8898-8902
-
-
Chambers, T.J.1
Weir, R.C.2
Grakoui, A.3
McCourt, D.W.4
Bazan, J.F.5
Fletterick, R.J.6
Rice, C.M.7
-
64
-
-
0025951299
-
Flavivirus enzyme-substrate interactions studied with chimeric proteinases: Identification of an intragenic locus important for substrate recognition
-
Preugschat F, Lenches EM, Strauss JH: Flavivirus enzyme-substrate interactions studied with chimeric proteinases: Identification of an intragenic locus important for substrate recognition. J Virol 1991, 65:4749-4758.
-
(1991)
J Virol
, vol.65
, pp. 4749-4758
-
-
Preugschat, F.1
Lenches, E.M.2
Strauss, J.H.3
-
65
-
-
0030667792
-
Cotranslational membrane insertion of the serine proteinase precursor NS2B-NS3(Pro) of dengue virus type 2 is required for efficient in vitro processing and is mediated through the hydrophobic regions of NS2B
-
Clum S, Ebner KE, Padmanabhan R: Cotranslational membrane insertion of the serine proteinase precursor NS2B-NS3(Pro) of dengue virus type 2 is required for efficient in vitro processing and is mediated through the hydrophobic regions of NS2B. J Biol Chem 1997, 272:30715-30723.
-
(1997)
J Biol Chem
, vol.272
, pp. 30715-30723
-
-
Clum, S.1
Ebner, K.E.2
Padmanabhan, R.3
-
66
-
-
0033166746
-
Crystallization, characterization and measurement of MAD data on crystals of dengue virus NS3 serine protease complexed with mung-bean Bowman-Birk inhibitor
-
Krishna Murthy HM, Judge K, DeLucas L, Clum S, Padmanabhan R: Crystallization, characterization and measurement of MAD data on crystals of dengue virus NS3 serine protease complexed with mung-bean Bowman-Birk inhibitor. Acta Crystallogr D Biol Crystallogr 1999, 55:1370-1372.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, pp. 1370-1372
-
-
Krishna Murthy, H.M.1
Judge, K.2
DeLucas, L.3
Clum, S.4
Padmanabhan, R.5
-
67
-
-
0034963947
-
Mutagenesis of the dengue virus type 2 NS3 proteinase and the production of growth-restricted virus
-
Matusan AE, Kelley PG, Pryor MJ, Whisstock JC, Davidson AD, Wright PJ: Mutagenesis of the dengue virus type 2 NS3 proteinase and the production of growth-restricted virus. J Gen Virol 2001, 82:1647-1656.
-
(2001)
J Gen Virol
, vol.82
, pp. 1647-1656
-
-
Matusan, A.E.1
Kelley, P.G.2
Pryor, M.J.3
Whisstock, J.C.4
Davidson, A.D.5
Wright, P.J.6
-
68
-
-
0033571623
-
Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase
-
Yao N, Reichert P, Taremi SS, Prosise WW, Weber PC: Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase. Structure 1999, 7:1353-1363.
-
(1999)
Structure
, vol.7
, pp. 1353-1363
-
-
Yao, N.1
Reichert, P.2
Taremi, S.S.3
Prosise, W.W.4
Weber, P.C.5
-
69
-
-
13244281716
-
Site-directed mutagenesis and kinetic studies of the West Nile Virus NS3 protease identify key enzyme-substrate interactions
-
Chappell KJ, Nall TA, Stoermer MJ, Fang NX, Tyndall JD, Fairlie DP, Young PR: Site-directed mutagenesis and kinetic studies of the West Nile Virus NS3 protease identify key enzyme-substrate interactions. J Biol Chem 2005, 280:2896-2903.
-
(2005)
J Biol Chem
, vol.280
, pp. 2896-2903
-
-
Chappell, K.J.1
Nall, T.A.2
Stoermer, M.J.3
Fang, N.X.4
Tyndall, J.D.5
Fairlie, D.P.6
Young, P.R.7
-
70
-
-
9644273993
-
Identification and enzymatic characterization of NS2B-NS3 protease of Alkhurma virus, a class-4 flavivirus
-
Bessaud M, Grard G, Peyrefitte CN, Pastorino B, Rolland D, Charrel RN, de Lamballerie X, Tolou HJ: Identification and enzymatic characterization of NS2B-NS3 protease of Alkhurma virus, a class-4 flavivirus. Virus Res 2005, 107:57-62.
-
(2005)
Virus Res
, vol.107
, pp. 57-62
-
-
Bessaud, M.1
Grard, G.2
Peyrefitte, C.N.3
Pastorino, B.4
Rolland, D.5
Charrel, R.N.6
de Lamballerie, X.7
Tolou, H.J.8
-
71
-
-
0029460649
-
Expression of the Japanese encephalitis virus NS3 and NS2b proteins as glutathione Stransferase fusions
-
Shivashankar Y, Satchidanandam V: Expression of the Japanese encephalitis virus NS3 and NS2b proteins as glutathione Stransferase fusions. Indian J Biochem Biophys 1995, 32:356-360.
-
(1995)
Indian J Biochem Biophys
, vol.32
, pp. 356-360
-
-
Shivashankar, Y.1
Satchidanandam, V.2
-
72
-
-
0028944286
-
Processing of Japanese encephalitis virus non-structural proteins: NS2B-NS3 complex and heterologous proteases
-
Jan LR, Yang CS, Trent DW, Falgout B, Lai CJ: Processing of Japanese encephalitis virus non-structural proteins: NS2B-NS3 complex and heterologous proteases. J Gen Virol 1995, 76:573-580.
-
(1995)
J Gen Virol
, vol.76
, pp. 573-580
-
-
Jan, L.R.1
Yang, C.S.2
Trent, D.W.3
Falgout, B.4
Lai, C.J.5
-
73
-
-
0030923806
-
Upregulation of signalase processing and induction of prM-E secretion by the flavivirus NS2B-NS3 protease: Roles of protease components
-
Yamshchikov VF, Trent DW, Compans RW: Upregulation of signalase processing and induction of prM-E secretion by the flavivirus NS2B-NS3 protease: Roles of protease components. J Virol 1997, 71:4364-4371.
-
(1997)
J Virol
, vol.71
, pp. 4364-4371
-
-
Yamshchikov, V.F.1
Trent, D.W.2
Compans, R.W.3
-
74
-
-
0033605260
-
Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects
-
Murthy HM, Clum S, Padmanabhan R: Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects. J Biol Chem 1999, 274:5573-5580.
-
(1999)
J Biol Chem
, vol.274
, pp. 5573-5580
-
-
Murthy, H.M.1
Clum, S.2
Padmanabhan, R.3
-
75
-
-
2642590958
-
Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 A resolution structure in a hexagonal crystal form
-
Yan Y, Li Y, Munshi S, Sardana V, Cole JL, Sardana M, Steinkuehler C, Tomei L, De Francesco R, Kuo LC, Chen Z: Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 A resolution structure in a hexagonal crystal form. Protein Sci 1998, 7:837-847.
-
(1998)
Protein Sci
, vol.7
, pp. 837-847
-
-
Yan, Y.1
Li, Y.2
Munshi, S.3
Sardana, V.4
Cole, J.L.5
Sardana, M.6
Steinkuehler, C.7
Tomei, L.8
De Francesco, R.9
Kuo, L.C.10
Chen, Z.11
-
76
-
-
0000243829
-
Procheck: A program to check the stereochemical quality of protein structure
-
LaskAwski RA, MacArthur MW, Moss DS, Thornton JM: Procheck: a program to check the stereochemical quality of protein structure. J Appl Cryst 1993, 26:283-291.
-
(1993)
J Appl Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
77
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
Sippl MJ: Recognition of errors in three-dimensional structures of proteins. Proteins 1993, 17:355-362.
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
79
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157:105-132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
80
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C: Dictionary of proPein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
81
-
-
0030729481
-
Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold
-
Perona JJ, Craik CS: Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold. J Biol Chem 1997, 272:29987-29990.
-
(1997)
J Biol Chem
, vol.272
, pp. 29987-29990
-
-
Perona, J.J.1
Craik, C.S.2
-
84
-
-
48749137581
-
Stochastic boundary conditions for molecular dynamics simulations of ST2 water
-
Brunger AT, Brooks CL, Karplus M: Stochastic boundary conditions for molecular dynamics simulations of ST2 water. Chem Phys Let 1984, 105:495-500.
-
(1984)
Chem Phys Let
, vol.105
, pp. 495-500
-
-
Brunger, A.T.1
Brooks, C.L.2
Karplus, M.3
|