-
1
-
-
0027234192
-
TRNA as a positive regulator of transcription antitermination in B. subtilis
-
Grundy F.J., and Henkin T.M. TRNA as a positive regulator of transcription antitermination in B. subtilis. Cell 74 (1993) 475-482
-
(1993)
Cell
, vol.74
, pp. 475-482
-
-
Grundy, F.J.1
Henkin, T.M.2
-
2
-
-
0028069482
-
Conservation of a transcription antitermination mechanism in aminoacyl-tRNA synthetase and amino acid biosynthesis genes in Gram-positive bacteria
-
Grundy F.J., and Henkin T.M. Conservation of a transcription antitermination mechanism in aminoacyl-tRNA synthetase and amino acid biosynthesis genes in Gram-positive bacteria. J. Mol. Biol. 235 (1994) 798-804
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 798-804
-
-
Grundy, F.J.1
Henkin, T.M.2
-
3
-
-
0026504685
-
Analysis of the Bacillus subtilis tyrS gene: conservation of a regulatory sequence in multiple transfer-RNA synthetase genes
-
Henkin T.M., Glass B.L., and Grundy F.J. Analysis of the Bacillus subtilis tyrS gene: conservation of a regulatory sequence in multiple transfer-RNA synthetase genes. J. Bacteriol. 174 (1992) 1299-1306
-
(1992)
J. Bacteriol.
, vol.174
, pp. 1299-1306
-
-
Henkin, T.M.1
Glass, B.L.2
Grundy, F.J.3
-
4
-
-
41649115061
-
Comparative genomic analysis of T-box regulatory systems in bacteria
-
Vitreschak A.G., Mironov A.A., Lyubetsky V.A., and Gelfand M.S. Comparative genomic analysis of T-box regulatory systems in bacteria. RNA 14 (2008) 717-735
-
(2008)
RNA
, vol.14
, pp. 717-735
-
-
Vitreschak, A.G.1
Mironov, A.A.2
Lyubetsky, V.A.3
Gelfand, M.S.4
-
5
-
-
0028025386
-
Interaction between the acceptor end of tRNA and the T-box stimulates antitermination in the Bacillus subtilis tyrS gene: a new role for the discriminator base
-
Grundy F.J., Rollins S.M., and Henkin T.M. Interaction between the acceptor end of tRNA and the T-box stimulates antitermination in the Bacillus subtilis tyrS gene: a new role for the discriminator base. J. Bacteriol. 176 (1994) 4518-4526
-
(1994)
J. Bacteriol.
, vol.176
, pp. 4518-4526
-
-
Grundy, F.J.1
Rollins, S.M.2
Henkin, T.M.3
-
6
-
-
0030795362
-
Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS gene
-
Rollins S.M., Grundy F.J., and Henkin T.M. Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS gene. Mol. Microbiol. 25 (1997) 411-421
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 411-421
-
-
Rollins, S.M.1
Grundy, F.J.2
Henkin, T.M.3
-
7
-
-
0030901060
-
Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination
-
Grundy F.J., Hodil S.E., Rollins S.M., and Henkin T.M. Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination. J. Bacteriol. 179 (1997) 2587-2594
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2587-2594
-
-
Grundy, F.J.1
Hodil, S.E.2
Rollins, S.M.3
Henkin, T.M.4
-
8
-
-
0037143628
-
TRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome
-
Grundy F.J., Winkler W.C., and Henkin T.M. TRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome. Proc. Natl. Acad. Sci. USA 99 (2002) 11121-11126
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11121-11126
-
-
Grundy, F.J.1
Winkler, W.C.2
Henkin, T.M.3
-
10
-
-
12344255940
-
Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene
-
Grundy F.J., Yousef M.R., and Henkin T.M. Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. J. Mol. Biol. 346 (2005) 73-81
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 73-81
-
-
Grundy, F.J.1
Yousef, M.R.2
Henkin, T.M.3
-
11
-
-
4344579386
-
Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA
-
Bradrick T.D., and Marino J.P. Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA. RNA 10 (2004) 1459-1468
-
(2004)
RNA
, vol.10
, pp. 1459-1468
-
-
Bradrick, T.D.1
Marino, J.P.2
-
12
-
-
33745158959
-
Catalytic core structure of the trans-acting HDV ribozyme is subtly influenced by sequence variation outside the core
-
Gondert M.E., Tinsley R.A., Rueda D., and Walter N.G. Catalytic core structure of the trans-acting HDV ribozyme is subtly influenced by sequence variation outside the core. Biochemistry 45 (2006) 7563-7573
-
(2006)
Biochemistry
, vol.45
, pp. 7563-7573
-
-
Gondert, M.E.1
Tinsley, R.A.2
Rueda, D.3
Walter, N.G.4
-
13
-
-
0037044320
-
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis
-
Harris D.A., Rueda D., and Walter N.G. Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis. Biochemistry 41 (2002) 12051-12061
-
(2002)
Biochemistry
, vol.41
, pp. 12051-12061
-
-
Harris, D.A.1
Rueda, D.2
Walter, N.G.3
-
14
-
-
0036396544
-
Functional group requirements in the probable active site of the VS ribozyme
-
Lafontaine D.A., Wilson T.J., Zhao Z.-Y., and Lilley D.M.J. Functional group requirements in the probable active site of the VS ribozyme. J. Mol. Biol. 323 (2002) 23-34
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 23-34
-
-
Lafontaine, D.A.1
Wilson, T.J.2
Zhao, Z.-Y.3
Lilley, D.M.J.4
-
15
-
-
34548761368
-
Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach
-
Lang K., Rieder R., and Micura R. Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach. Nucleic Acids Res. 35 (2007) 5370-5378
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5370-5378
-
-
Lang, K.1
Rieder, R.2
Micura, R.3
-
16
-
-
6344294088
-
Global and local dynamics of the U1A polyadenylation inhibition element (PIE) RNA and PIE RNA-U1A complexes
-
Clerte C., and Hall K.B. Global and local dynamics of the U1A polyadenylation inhibition element (PIE) RNA and PIE RNA-U1A complexes. Biochemistry 43 (2004) 13404-13415
-
(2004)
Biochemistry
, vol.43
, pp. 13404-13415
-
-
Clerte, C.1
Hall, K.B.2
-
17
-
-
1642347123
-
Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences
-
Kaul M., Barbieri C.M., and Pilch D.S. Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences. J. Am. Chem. Soc. 126 (2004) 3447-3453
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3447-3453
-
-
Kaul, M.1
Barbieri, C.M.2
Pilch, D.S.3
-
18
-
-
31144473532
-
Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes
-
Neely R.K., Daujotyte D., Grazulis S., Magennis S.W., Dryden D.T.F., Klimasauskas S., and Jones A.C. Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes. Nucleic Acids Res. 33 (2005) 6953-6960
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6953-6960
-
-
Neely, R.K.1
Daujotyte, D.2
Grazulis, S.3
Magennis, S.W.4
Dryden, D.T.F.5
Klimasauskas, S.6
Jones, A.C.7
-
19
-
-
34249890505
-
Probing DNA polymerase-DNA interactions: examining the template strand in exonuclease complexes using 2-aminopurine fluorescence and acrylamide quenching
-
Tleugabulova D., and Reha-Krantz L.J. Probing DNA polymerase-DNA interactions: examining the template strand in exonuclease complexes using 2-aminopurine fluorescence and acrylamide quenching. Biochemistry 46 (2007) 6559-6569
-
(2007)
Biochemistry
, vol.46
, pp. 6559-6569
-
-
Tleugabulova, D.1
Reha-Krantz, L.J.2
-
20
-
-
45249091527
-
Long-wavelength fluorescence from 2-aminopurine-nucleobase dimers in DNA
-
Bonnist E.Y.M., and Jones A.C. Long-wavelength fluorescence from 2-aminopurine-nucleobase dimers in DNA. ChemPhysChem 9 (2008) 1121-1129
-
(2008)
ChemPhysChem
, vol.9
, pp. 1121-1129
-
-
Bonnist, E.Y.M.1
Jones, A.C.2
-
21
-
-
0035969959
-
Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence
-
Rachofsky E.L., Osman R., and Ross J.B.A. Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence. Biochemistry 40 (2001) 946-956
-
(2001)
Biochemistry
, vol.40
, pp. 946-956
-
-
Rachofsky, E.L.1
Osman, R.2
Ross, J.B.A.3
-
22
-
-
0029762376
-
2-Aminopurine labeled RNA bulge loops. Synthesis and thermodynamics
-
Zagórowska I., and Adamiak R.W. 2-Aminopurine labeled RNA bulge loops. Synthesis and thermodynamics. Biochimie 78 (1996) 123-130
-
(1996)
Biochimie
, vol.78
, pp. 123-130
-
-
Zagórowska, I.1
Adamiak, R.W.2
-
23
-
-
0034847595
-
2-Aminopurine as a real-time probe of enzymatic cleavage and inhibition of hammerhead ribozymes
-
Kirk S.R., Luedtke N.W., and Tor Y. 2-Aminopurine as a real-time probe of enzymatic cleavage and inhibition of hammerhead ribozymes. Bioorg. Med. Chem. 9 (2001) 2295-2301
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2295-2301
-
-
Kirk, S.R.1
Luedtke, N.W.2
Tor, Y.3
-
24
-
-
0037032244
-
2-Aminopurine: a probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids
-
O'Neill M.A., and Barton J.K. 2-Aminopurine: a probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids. J. Am. Chem. Soc. 124 (2002) 13053-13066
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 13053-13066
-
-
O'Neill, M.A.1
Barton, J.K.2
-
25
-
-
0035368861
-
Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence
-
Rist M.J., and Marino J.P. Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence. Nucleic Acids Res. 29 (2001) 2401-2408
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2401-2408
-
-
Rist, M.J.1
Marino, J.P.2
-
26
-
-
33947412770
-
T box riboswitch antiterminator affinity modulated by tRNA structural elements
-
Means J.A., Wolf S., Agyeman A., Burton J.S., Simson C.M., and Hines J.V. T box riboswitch antiterminator affinity modulated by tRNA structural elements. Chem. Biol. Drug Des. 69 (2007) 139-145
-
(2007)
Chem. Biol. Drug Des.
, vol.69
, pp. 139-145
-
-
Means, J.A.1
Wolf, S.2
Agyeman, A.3
Burton, J.S.4
Simson, C.M.5
Hines, J.V.6
-
27
-
-
33745613531
-
TRNA regulation of gene expression: interactions of an mRNA 5′-UTR with a regulatory tRNA
-
Nelson A.R., Henkin T.M., and Agris P.F. TRNA regulation of gene expression: interactions of an mRNA 5′-UTR with a regulatory tRNA. RNA 12 (2006) 1254-1261
-
(2006)
RNA
, vol.12
, pp. 1254-1261
-
-
Nelson, A.R.1
Henkin, T.M.2
Agris, P.F.3
-
28
-
-
0037082440
-
In vitro structure-function studies of the Bacillus subtilis tyrS mRNA antiterminator: evidence for factor-independent tRNA acceptor stem binding specificity
-
Gerdeman M.S., Henkin T.M., and Hines J.V. In vitro structure-function studies of the Bacillus subtilis tyrS mRNA antiterminator: evidence for factor-independent tRNA acceptor stem binding specificity. Nucleic Acids Res. 30 (2002) 1065-1072
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1065-1072
-
-
Gerdeman, M.S.1
Henkin, T.M.2
Hines, J.V.3
-
30
-
-
33646846818
-
Structure-activity studies of oxazolidinone analogs as RNA-binding agents
-
Means J.A., Katz S., Nayek A., Anupam R., Hines J.V., and Bergmeier S.C. Structure-activity studies of oxazolidinone analogs as RNA-binding agents. Bioorg. Med. Chem. Lett. 16 (2006) 3600-3604
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 3600-3604
-
-
Means, J.A.1
Katz, S.2
Nayek, A.3
Anupam, R.4
Hines, J.V.5
Bergmeier, S.C.6
-
31
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3′ terminus of RNAs transcribed by T7 RNA polymerase
-
Kao C., Zheng M., and Rudisser S. A simple and efficient method to reduce nontemplated nucleotide addition at the 3′ terminus of RNAs transcribed by T7 RNA polymerase. RNA 5 (1999) 1268-1272
-
(1999)
RNA
, vol.5
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rudisser, S.3
-
32
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA-polymerase and synthetic DNA templates
-
Milligan J.F., Groebe D.R., Witherell G.W., and Uhlenbeck O.C. Oligoribonucleotide synthesis using T7 RNA-polymerase and synthetic DNA templates. Nucleic Acids Res. 15 (1987) 8783-8798
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
33
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA-polymerase
-
Milligan J.F., and Uhlenbeck O.C. Synthesis of small RNAs using T7 RNA-polymerase. Methods Enzymol. 180 (1989) 51-62
-
(1989)
Methods Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
35
-
-
0020479347
-
Synthesis and physicochemical properties of two analogs of poly(dA): poly(2-aminopurine-9-β-d-deoxyribonucleotide) and poly 2-amino-deoxyadenylic acid
-
Scheit K.H., and Rackwitz H.R. Synthesis and physicochemical properties of two analogs of poly(dA): poly(2-aminopurine-9-β-d-deoxyribonucleotide) and poly 2-amino-deoxyadenylic acid. Nucleic Acids Res. 10 (1982) 4059-4069
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 4059-4069
-
-
Scheit, K.H.1
Rackwitz, H.R.2
-
36
-
-
0014669561
-
Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2, 6-diaminopurine riboside, and their derivatives
-
Ward D.C., Reich E., and Stryer L. Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2, 6-diaminopurine riboside, and their derivatives. J. Biol. Chem. 244 (1969) 1228-1237
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1228-1237
-
-
Ward, D.C.1
Reich, E.2
Stryer, L.3
-
37
-
-
33845590143
-
Influence of base dynamics on the conformational properties of DNA: observation of static conformational states in rigid duplexes at 77 K
-
Neely R.K., and Jones A.C. Influence of base dynamics on the conformational properties of DNA: observation of static conformational states in rigid duplexes at 77 K. J. Am. Chem. Soc. 128 (2006) 15952-15953
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 15952-15953
-
-
Neely, R.K.1
Jones, A.C.2
-
38
-
-
23944512612
-
Structural heterogeneity in DNA: temperature dependence of 2-aminopurine fluorescence in dinucleotides
-
Somsen O.J.G., Keukens L.B., de Keijzer M.N., van Hoek A., and van Amerongen H. Structural heterogeneity in DNA: temperature dependence of 2-aminopurine fluorescence in dinucleotides. ChemPhysChem 6 (2005) 1622-1627
-
(2005)
ChemPhysChem
, vol.6
, pp. 1622-1627
-
-
Somsen, O.J.G.1
Keukens, L.B.2
de Keijzer, M.N.3
van Hoek, A.4
van Amerongen, H.5
-
39
-
-
0037168467
-
RNA polymerase alters the mobility of an A-residue crucial to polymerase-induced melting of promoter DNA
-
Tsujikawa L., Strainic M.G., Watrob H., Barkley M.D., and DeHaseth P.L. RNA polymerase alters the mobility of an A-residue crucial to polymerase-induced melting of promoter DNA. Biochemistry 41 (2002) 15334-15341
-
(2002)
Biochemistry
, vol.41
, pp. 15334-15341
-
-
Tsujikawa, L.1
Strainic, M.G.2
Watrob, H.3
Barkley, M.D.4
DeHaseth, P.L.5
-
40
-
-
0037423679
-
Solution structure of the Bacillus subtilis T-box antiterminator RNA: seven nucleotide bulge characterized by stacking and flexibility
-
Gerdeman M.S., Henkin T.M., and Hines J.V. Solution structure of the Bacillus subtilis T-box antiterminator RNA: seven nucleotide bulge characterized by stacking and flexibility. J. Mol. Biol. 326 (2003) 189-201
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 189-201
-
-
Gerdeman, M.S.1
Henkin, T.M.2
Hines, J.V.3
-
41
-
-
34249283102
-
Photophysics and X-ray structure of crystalline 2-aminopurine
-
Neely R.K., Magennis S.W., Parsons S., and Jones A.C. Photophysics and X-ray structure of crystalline 2-aminopurine. ChemPhysChem 8 (2007) 1095-1102
-
(2007)
ChemPhysChem
, vol.8
, pp. 1095-1102
-
-
Neely, R.K.1
Magennis, S.W.2
Parsons, S.3
Jones, A.C.4
-
42
-
-
0037118897
-
Exciton and excimer formation in DNA at room temperature
-
Rist M., Wagenknecht H.A., and Fiebig T. Exciton and excimer formation in DNA at room temperature. ChemPhysChem 3 (2002) 704-707
-
(2002)
ChemPhysChem
, vol.3
, pp. 704-707
-
-
Rist, M.1
Wagenknecht, H.A.2
Fiebig, T.3
-
43
-
-
2342479085
-
Unusual 2-aminopurine fluorescence from a complex of DNA and the EcoKI methyltransferase
-
Su T.J., Connolly B.A., Darlington C., Mallin R., and Dryden D.T.F. Unusual 2-aminopurine fluorescence from a complex of DNA and the EcoKI methyltransferase. Nucleic Acids Res. 32 (2004) 2223-2230
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2223-2230
-
-
Su, T.J.1
Connolly, B.A.2
Darlington, C.3
Mallin, R.4
Dryden, D.T.F.5
-
44
-
-
34249046986
-
2-Aminopurine flipped into the active site of the adenine-specific DNA methyltransferase M.Taql: crystal structures and time-resolved fluorescence
-
Lenz T., Bonnist E.Y.M., Pljevaljčić G., Neely R.K., Dryden D.T.F., Scheidig A.J., Jones A.C., and Weinhold E. 2-Aminopurine flipped into the active site of the adenine-specific DNA methyltransferase M.Taql: crystal structures and time-resolved fluorescence. J. Am. Chem. Soc. 129 (2007) 6240-6248
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 6240-6248
-
-
Lenz, T.1
Bonnist, E.Y.M.2
Pljevaljčić, G.3
Neely, R.K.4
Dryden, D.T.F.5
Scheidig, A.J.6
Jones, A.C.7
Weinhold, E.8
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