Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence

Nucleic Acids Research

Volumn 29, Issue 11, 2001, Pages 2401-2408

  Rist, M J ^a   Marino, J P ^a  

^a NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; PROTEIN; RNA;

ARTICLE; BASE PAIRING; BINDING AFFINITY; COMPLEX FORMATION; CONTROLLED STUDY; DISSOCIATION; FLUORESCENCE; ISOMERISM; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA ANALYSIS; RNA STRUCTURE;

EID: 0035368861     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.11.2401     Document Type: Article

References (30)

1. Anti-sense RNA
2. Control of ColE1 plasmid replication: The process of binding of RNA I to the primer transcript
3. Control of ColE1 plasmid replication: Initial interaction of RNA I and the primer transcript is reversible
4. Control of ColE1 plasmid replication: Binding of RNA I to RNA II and inhibition of primer formation
5. Control of ColE1 plasmid replication: Intermediates in the binding of RNA I and RNA II
6. Control of ColE1 plasmid replication: Interaction of Rom protein with an unstable complex formed by RNA I and RNA II
7. Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein
8. Complexes formed by complementary RNA stem-loops: Their formations, structures and interaction with ColE1 Rom protein
9. Determinants of RNA hairpin loop-loop complex stability
10. Bent helix formation between RNA hairpins with complementary loops
11. The solution structure of an RNA loop-loop complex: The ColE1 inverted loop sequence
12. Fluorescence studies of DNA and RNA structure and dynamics
13. 2-Aminopurine fluorescence quenching and lifetimes: Role of base stacking
14. Synthesis of small RNAs using T7 RNA polymerase
15. Oligonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
16. Deoxynucleoside phosphoramidites- a new class of key intermediates for deoxypolynucleotides synthesis
17. Dissecting RNA-protein interactions: RNA-RNA recognition by Rop
18. 2-Aminopurine fluorescence studies of base stacking interactions at basic sites in DNA: Metal-ion and base sequence effects
19. 2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferase
20. Conformations of DNA bases: 2-aminopurine fluorescence decays and NMR
21. The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage-T4 DNA-polymerase
22. Using 2-aminopurine fluorescence and mutational analysis to demonstrate an active role of bacteriophage T4 DNA polymerase in strand separation required for 3′→5′-exonuclease activity
23. Kinetic mechanism of damage site recognition and uracil flipping by Escheriachia coli uracil DNA glycosylase
24. Mechanism of neomycin and Rev peptide binding to the Rev responsive element of HIV-1 as determined by fluorescence and NMR spectroscopy
25. RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour
26. 2+- dependent conformational changes in the hammerhead ribozyme
27. Multiple conformational states of the hammerhead ribozyme, broad time range of relaxation and topology of dynamics