Variation in transcript abundance among the four members of the Arabidopsis thaliana RIBOSOMAL PROTEIN S15a gene family

Plant Science

Volumn 169, Issue 1, 2005, Pages 267-278

  Hulm, Jacqueline L ^a   McIntosh, Kerri B ^a   Bonham Smith, Peta C ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Ribosomal protein; Ribosome; RPS15a; sqRT PCR; Transcriptional regulation

Indexed keywords

ACETIC ACID; AMINO ACIDS; CYTOLOGY; GENES; PLANTS (BOTANY); RNA; TISSUE;

MULTI-GENE FAMILIES; RIBOSOMAL PROTEIN (R-PROTEIN); RIBOSOMAL PROTEINS; RIBOSOMAL RNA (RRNA);

PROTEINS;

ACETIC ACID; AMINO ACIDS; CYTOLOGY; GENES; NUCLEIC ACIDS; PLANTS; PROTEINS; TISSUE;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 19544388230     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2005.04.001     Document Type: Article

References (60)

1. T. Uechi, T. Tanaka, and N. Kenmochi A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders Genomics 72 2001 223 230
2. I.G. Wool Extraribosomal functions of ribosomal proteins Trends Biol. Sci. 21 1996 164 165
3. R.J. Planta, and W.H. Mager The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae Yeast 14 1998 471 477
4. J. Bailey-Serres Cytoplasmic ribosomes of higher plants J. Bailey-Serres D.R. Gallie A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants 1998 American Association of Plant Physiologists Rockwell, MD 125 144
5. A. Barakat, K. Szick-Miranda, I.F. Chang, R. Guyot, G. Blanc, R. Cooke, M. Delseny, and J. Bailey-Serres The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome Plant Physiol. 127 2001 398 415
6. A. Lambertsson The Minute genes in Drosophila and their molecular functions Adv. Genet. 38 1998 69 134
7. K. Kongsuwan, Q. Yu, A. Vincent, M.C. Frisardi, M. Rosbash, J.A. Lengyel, and J. Merriam A Drosophila Minute gene encodes a ribosomal protein Nature 317 1985 555 558
8. M. Van Lijsebettens, R. Vanderhaegen, M. De Block, G. Bauw, R. Villarroel, and M. Van Montagu An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems EMBO J. 13 1994 3378 3388
9. E. Revenkova, J. Masson, C. Koncz, K. Afsar, L. Jakovleva, and J. Paszkowski Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA degradation triggered by genotoxic stress EMBO J. 18 1999 490 499
10. T. Ito, G.-T. Kim, and K. Shinozaki Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development Plant J. 22 2000 257 264
11. D. Weijers, M. Franke-van Dijk, R.-J. Vencken, A. Quint, P. Hooykaas, and R. Offringa An Arabidopsis minute-like phenotype caused by a semi-dominant mutation in a Ribosomal Protein S5 gene Development 128 2001 4289 4299
12. R.J. Planta Regulation of ribosome synthesis in yeast Yeast 13 1997 1505 1518
13. I.G. Wool, Y.-L. Chan, and A. Gluck Structure and evolution of mammalian ribosomal proteins Biochem. Cell Biol. 73 1995 933 947
14. M. Jain, S.B. Tyagi, J.K. Thakur, A.K. Tyagi, and J.P. Khurana Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica Biochim. Biophys. Acta 1676 2004 182 192
15. M. Lebrun, and G. Freyssinet Nucleotide sequence and characterization of a maize cytoplasmic ribosomal protein S11 cDNA Plant Mol. Biol. 17 1991 265 268
16. J.C. Larkin, J.P. Hunsperger, D. Culley, I. Rubenstein, and C.D. Silflow The organization and expression of a maize ribosomal protein gene family Genes Dev. 3 1989 500 509
17. P.C. Bonham-Smith, T.L. Oancia, and M.M. Moloney Cytoplasmic ribosomal protein S15a from Brassica napus: molecular cloning and developmental expression in mitotically active tissues Plant Mol. Biol. 18 1992 909 919
18. K.B. McIntosh, P.C. Bonham-Smith, Expression analysis of the two differentially transcribed ribosomal protein L23A genes in Arabidopsis thaliana. Genome, in press.
19. I. Marty, and Y. Meyer cDNA nucleotide sequence and expression of a tobacco cytoplasmic ribosomal protein L2 gene Nucl. Acids Res. 20 1992 1517 1522
20. Z. Dai, J. Gao, K. An, J.M. Lee, G.E. Edwards, and G. An Promoter elements controlling developmental and environmental regulation of a tobacco ribosomal protein gene L34 Plant Mol. Biol. 32 1996 1055 1065
21. J. Gao, S.-R. Kim, Y.-Y. Chung, J.M. Lee, and G. An Developmental and environmental regulation of two ribosomal protein genes in tobacco Plant Mol. Biol. 25 1994 761 770
22. D.L. Moran Characterization of the structure and expression of a highly conserved ribosomal protein gene, L9, from pea Gene 253 2000 19 29
23. D. Giannino, G. Frugis, C. Ticconi, S. Florio, G. Mele, L. Santini, R. Cozza, M.B. Bitonti, A. Innocenti, and D. Mariotti Isolation and molecular characterization of the gene encoding the cytoplasmic ribosomal protein S28 in Prunus persica [L.] Batsch Mol. Gen. Genet. 263 2000 201 212
24. H.-S. Lee, J.-H. Mun, and S.-G. Kim Characterization of cDNAs encoding cytoplasmic ribosomal protein L15 and L27a in petunia (Petunia hybrida): primary structures and coordinate expression Gene 226 1999 155 163
25. M.A. Taylor, S.A. Mad Arif, S.R. Pearce, H.V. Davies, A. Kumar, and L.A. George Differential expression and sequence analysis of ribosomal protein genes induced in stolon tips of potato (Solanum tuberosum L.) during the early stages of tuberisation Plant Physiol. 100 1992 1171 1176
26. J.S. Gantt, and J.L. Key Coordinate expression of ribosomal protein mRNAs following auxin treatment of soybean hypocotyls J. Biol. Chem. 260 1985 6175 6181
27. M.E. Williams, and I.M. Sussex Developmental regulation of ribosomal protein L16 genes in Arabidopsis thaliana Plant J. 8 1995 65 76
28. S. Tishchenko, A. Nikulin, N. Fomenkova, N. Nevskaya, O. Nikonov, P. Dumas, H. Moine, B. Ehresmann, C. Ehresmann, W. Piendl, V. Lamzin, M. Garber, and S. Nikonov Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii J. Mol. Biol. 311 2001 311 324
29. D.E. Brodersen, W.M. Clemons Jr., A.P. Carter, B.T. Wimberly, and V. Ramakrishnan Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S rRNA J. Mol. Biol. 316 2002 725 768
30. J.L. Yates, A.E. Arfsten, and M. Nomura In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation Proc. Natl. Acad. Sci. U.S.A. 77 1980 1837 1841
31. D. Dean, J.L. Yates, and M. Nomura Escherichia coli ribosomal protein S8 feedback regulates part of the spc operon Nature 289 1981 89 91
32. R.J. Gregory, P.B.F. Cahill, D.L. Thurlow, and R.A. Zimmermann Interaction of Escherichia coli ribosomal protein S8 with its binding sites in ribosomal RNA and messenger RNA J. Mol. Biol. 204 1988 295 307
33. D.P. Cerretti, L.C. Mattheakis, K.R. Kearney, L. Vu, and M. Nomura Translational regulation of the spc operon in Escherichia coli: identification and structural analysis of the target site for S8 repressor protein J. Mol. Biol. 204 1988 309 325
34. S.J. Clough, and A.F. Bent Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana Plant J. 16 1998 735 743
35. T. Murashige, and F. Skoog A revised medium for rapid growth and bio-assays with tobacco tissue cultures Physiol. Plant. 15 1962 473 497
36. M.G. Kenward, and J.H. Roger Small sample inference for fixed effects from restricted maximum likelihood Biometrics 53 1997 983 997
37. K.L. Adams, D.O. Daley, J. Whelan, and J.D. Palmer Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts Plant Cell 14 2002 931 943
38. K. Higo, Y. Ugawa, M. Iwamoto, and T. Korenaga Plant cis-acting regulatory DNA elements (PLACE) database Nucl. Acids Res. 27 1999 297 300
39. T. Berberich, M. Uebeler, and J. Feierabend cDNA cloning of cytoplasmic ribosomal protein S7 of winter rye (Secale cereale) and its expression in low-temperature-treated leaves Biochim. Biophys. Acta 1492 2000 276 279
40. J. Redman, J. Whitcraft, C. Johnson, and J. Arias Abiotic and biotic stress differentially stimulate as-1 element activity in Arabidopsis Plant Cell Rep. 21 2002 180 185
41. K. Baumann, A. De Paolis, P. Constantino, and G. Gualberti The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants Plant Cell. 11 1999 323 333
42. M.A. Dunn, A.J. White, S. Vural, and M.A. Hughes Identification of promoter elements in a low-temperature-responsive gene (blt4.9) from barley (Hordeum vulgare L.) Plant Mol. Biol. 38 1998 551 564
43. D.Y. Sung, E. Vierling, and C.L. Guy Comprehensive expression profile analysis of the Arabidopsis Hsp70 gene family Plant Physiol. 126 2001 789 800
44. S. Hong, E. Vierling, and S.W. Hong HSP101 is necessary for heat tolerance but dispensable for development and germination in the absence of stress Plant J. 27 2001 25 35
45. C.T. Lin, and M.F. Thomashow DNA sequence analysis of a complementary DNA for cold-regulated Arabidopsis gene cor15 and characterization of the COR15 polypeptide Plant Physiol. 99 1992 519 525
46. C. Gorenstein, and J.R. Warner Coordinate regulation of the synthesis of eukaryotic ribosomal proteins Proc. Natl. Acad. Sci. U.S.A. 73 1976 1547 1551
47. L. Taiz, and E. Zeiger Plant Physiology 1998 Sinauer Associates Sunderland, MA
48. T. Guilfoyle, G. Hagen, T. Ulmasov, and J. Murfett How does auxin turn on genes? Plant Physiol. 118 1998 341 347
49. J.S. Gantt, and J.L. Key Auxin-induced changes in the level of translatable ribosomal protein messenger ribonucleic acids in soybean hypocotyls Biochemistry 22 1983 4131 4139
50. D.L. Melanson, and J. Ingle Regulation of ribosomal RNA accumulation by auxin in Artichoke tissue Plant Physiol. 62 1978 761 765
51. G.N. Cherepneva, K-H. Schmidt, O.N. Kulaeva, R. Oelmüller, and V.V. Kusnetsov Expression of the ribosomal proteins S14, S16, L13a and L30 is regulated by cytokinin and abscisic acid; implication of the involvement of phytohormones in translational processes Plant Sci. 165 2003 925 932
52. D.N. Crowell, A.T. Kadlecek, M.C. John, and R.M. Amasing Cytokinin-induced mRNAs in cultured soybean cells Proc. Natl. Acad. Sci. U.S.A. 87 1990 8815 8819
53. P.J. Davies The plant hormones: their nature, occurrence and function P.J. Davies Plant Hormones: Physiology, Biochemistry and Molecular Biology 1995 Kluwer Academic Press Dordrecht 1 12
54. R.A. Volkov, I.I. Panchuk, and F. Schöffl Heat-stress-dependency and developmental modulation of gene expression: the potential of house-keeping genes as internal standards in mRNA expression profiling using real-time RT-PCR J. Exp. Bot. 54 2003 2343 2349
55. M.F. Thomashow Plant cold acclimation: freezing tolerance genes and regulatory mechanisms Annu. Rev. Plant Physiol. Plant Mol. Biol. 50 1999 571 599
56. T. Mizoguchi, N. Hayashida, K. Yamaguchi-Shinozaki, H. Kamada, and K. Shinozaki Two genes that encode ribosomal-protein S6 kinase homologs are induced by cold or salinity stress FEBS Lett. 358 1995 199 204
57. K.-Y. Kim, S.-W. Park, Y.-S. Chung, C.-H. Chung, J.-I. Kim, and J.-H. Lee Molecular cloning of low-temperature-inducible ribosomal proteins from soybean J. Exp. Bot. 55 2004 1153 1155
58. J. Sáez-Vásquez, P. Gallois, and M. Delseny Accumulation and nuclear targeting of BnC24, a Brassica napus ribosomal protein corresponding to a mRNA accumulating in response to cold treatment Plant Sci. 156 2000 35 46
59. 2 promoter Transgenic Res. 4 1995 388 396
60. H. Pena-Cortes, and L. Willmitzer The role of hormones in gene activation in response to wounding P.J. Davies Plant Hormones: Physiology, Biochemistry and Molecular Biology 1995 Kluwer Academic Press Dordrecht 395 414