Comparative analysis of the Arabidopsis pollen transcriptome

Plant Physiology

Volumn 132, Issue 2, 2003, Pages 640-652

  Honys, David ^a,b   Twell, David ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

^b INSTITUTE OF EXPERIMENTAL BOTANY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

COMPOSITION; GENES; METABOLISM; RNA;

MICROARRAYS;

PLANTS (BOTANY);

ARABIDOPSIS;

EID: 0038120839     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.020925     Document Type: Article

References (45)

1. Allen RL, Lonsdale DM (1993) Molecular characterisation of one of the maize polygalacturonase gene family members which are expressed during late pollen development. Plant J 3: 261-271
2. Bedinger P (1992) The remarkable biology of pollen. Plant Cell 4: 879-887
3. Belostotsky DA, Meagher RB (1993) Differential organ-specific expression of three poly(A) binding protein genes from Arabidopsis. Proc Natl Acad Sci USA 90: 6686-6690
4. Belostotsky DA, Meagher RB (1996) A pollen-, ovule-, and early embryospecific poly(A) binding protein from Arabidopsis complements essential functions in yeast. Plant Cell 8: 1261-1275
5. Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Gorlach J (2001) Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13: 1499-1510
6. Brander KA, Kuhlemeier C (1995) A pollen-specific DEAD-box protein related to translation initiation factor eIF-4A from tobacco. Plant Mol Biol 27: 637-649
7. Brandt S, Kloska S, Altmann T, Kehr J (2002) Using array hybridisation to monitor gene expression at the single cell level. J Exp Bot 53: 2315-2323
8. Goff SA, Goff SA, Ricke D, Lan T-H, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100
9. Goubet F, Misrahi A, Park S-K, Zhang Z, Twell D, Dupree P (2003) AtCSLA7, a cellulose-synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis. Plant Physiol 131: 547-557
10. Hepler PK, Vidali L, Cheung AY (2001) Polarized cell growth in higher plants. Annu Rev Cell Dev Biol 17: 159-187
11. Herrero J, Valencia A, Dopazo J (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17: 126-136
12. Hoekstra FA, Bruinsma J (1979) Protein synthesis of binucleate and trinucleate pollen and its relationship to tube emergence and growth. Planta 146: 559-566
13. Honys D, Combe J, Twell D, Capkova V (2000) The translationally repressed pollen-specific ntp303 mRNA is stored in non-polysomal mRNPs during pollen maturation. Sex Plant Reprod 13: 135-144
14. Huang S, McDowell JM, Weise MJ, Meagher RB (1996) The Arabidopsis profilin gene family: evidence for an ancient split between constitutive and pollen-specific profilin genes. Plant Physiol 111: 115-126
15. Institute for Genomic Research (2002) Arabidopsis Genome Annotation Release 3.0. ftp://ftp.tigr.org/pub/data/a_thaliana/athl/
16. Kim HU, Cotter R, Johnson S, Senda M, Dodds P, Kulikauskas R, Tang W, Ezcurra I, Herzmark P, McCormick S (2002) New pollen-specific receptor kinases identified in tomato, maize and Arabidopsis: The tomato kinases show overlapping but distinct localization patterns in pollen tubes. Plant Mol Biol 50: 1-16
17. Kulikauskas R, McCormick S (1997) Identification of the tobacco and Arabidopsis homologues of the pollen-expressed LAT59 gene of tomato. Plant Mol Biol 34: 809-814
18. Lee Y, Choi D, Kende H (2001) Expansins: ever-expanding numbers and functions. Curr Opin Plant Biol 4: 527-532
19. Li H, Bacic A, Read SM (1999) Role of a callose synthase zymogen in regulating wall deposition in pollen tubes of Nicotiana alata Link et Otto. Planta 208: 528-538
20. Lopez I, Anthony RG, Maciver SK, Jiang CJ, Khan S, Weeds AG, Hussey PJ (1996) Pollen specific expression of maize genes encoding actin depolymerizing factor-like proteins. Proc Natl Acad Sci USA 93: 7415-7420
21. Mascarenhas JP (1989) The male gametophyte of flowering plants. Plant Cell 1: 657-664
22. Mascarenhas JP (1990) Gene activity during pollen development. Annu Rev Plant Physiol Plant Mol Biol 41: 317-338
23. Maynard Smith J (1971) What use is sex? J Theor Biol 30: 319-335
24. McDowell JM, Huang S, McKinney EC, An Y-Q, Meagher RB (1996) Structure and evolution of the actin gene family in Arabidopsis thaliana. Genetics 142: 587-602
25. Mulcahy DL (1979) The rise of the angiosperms: a genecological factor. Science 206: 20-23
26. Mulcahy DL, Sari-Gorla M, Bergamini Mulcahy G (1996) Pollen selection: past, present and future. Sex Plant Reprod 9: 353-356
27. Park S-K, Howden R, Twell D (1998) The Arabidopsis thaliana gametophytic mutation pollen1 disrupts microspore polarity, division asymmetry and pollen cell fate. Development 125: 3789-3799
28. Pedersen S, Simonsen V, Loeschcke V (1987) Overlap of gametophytic and sporophytic gene expression in barley. Theor Appl Genet 75: 200-206
29. Ruskey F (1997) A survey of Venn diagrams. Electronic Journal of Combinatorics 4: DS5
30. Sari-Gorla M, Frova C, Binelli G, Ottaviano E (1986) The extent of gametophytic-sporophytic gene expression in maize. Theor Appl Genet 72: 42-47
31. Schrauwen J, de Groot P, van Herpen M, van Lee T, Reynen W, Weterings K, Wullems G (1990) Stage-related expression of mRNAs during pollen development in lily and tobacco. Planta 182: 298-304
32. Shiu S, Bleecker AB (2001) Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA 98: 10763-10768
33. Stadler R, Truernit E, Gahrtz M, Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force for anther dehiscence and pollen tube growth in Arabidopsis. Plant J 19: 269-278
34. Stinson JR, Eisenberg AJ, Willing RP, Pe MP, Hanson DD, Mascarenhas JP (1987) Genes expressed in the male gametophyte of flowering plants and their isolation. Plant Physiol 83: 442-447
35. Tang W, Ezcurra I, Muschietti J, McCormick S (2002) A cysteine-rich extracellular protein, LAT52, interacts with the extracellular domain of the pollen receptor kinase LePRK2. Plant Cell 14: 2277-2287
36. Tanksley SD, Zamir D, Rick CM (1981) Evidence for extensive overlap of sporophytic and gametophytic gene expression in Lycopersicon esculentum. Science 213: 454-455
37. Taylor LP, Hepler PK (1997) Pollen germination and tube growth. Annu Rev Plant Physiol Plant Mol Biol 48: 461-491
38. Twell D (1994) The diversity and regulation of gene expression in the pathway of male gametophyte development. In RJ Scott, AD Stead, eds, Molecular and Cellular Aspects of Plant Reproduction. Cambridge University Press, Cambridge, UK, pp 83-135
39. Twell D (2002) Pollen developmental biology. In SD O'Neill, JA Roberts, eds, Plant Reproduction. Annual Plant Reviews, Vol 6. Sheffield Academic Press, Sheffield, UK, pp 86-153
40. Welle S, Brooks AI, Thornton CA (2002) Computational method for reducing variance with Affymetrix microarrays. BMC Bioinformatics 3: 23
41. Weterings K, Reijnen W, van Aarssen R, Kortsee A, Spijkers J, van Herpen M, Schrauwen J, Wullems G (1992) Characterisation of a pollen-specific cDNA clone from Nicotiana tabacum expressed during microgametogenesis and germination. Plant Mol Biol 18: 1101-1111
42. Willing RP, Bashe D, Mascarenhas JP (1988) An analysis of the quantity and diversity of messenger RNAs from pollen and shoots of Zea mays. Theor Appl Genet 75: 751-753
43. Willing RP, Mascarenhas JP (1984) Analysis of the complexity and diversity of mRNAs from pollen and shoots of Tradescantia. Plant Physiol 75: 865-868
44. Wing RA, Yamaguchi J, Larabell SK, Ursin VM, McCormick S (1989) Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia. Plant Mol Biol 14: 17-28
45. Xu H, Weterings K, Vriezen W, Feron R, Xue Y, Derksen J, Mariani C (2002) Isolation and characterisation of male-germ-cell transcripts in Nicotiana tabacum. Sex Plant Reprod 14: 339-346