-
1
-
-
57049122976
-
Modes and cuts in metabolic networks: Complexity and algorithms
-
Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot MF, Stougie L. 2009. Modes and cuts in metabolic networks: Complexity and algorithms. Biosystems 95: 51-60.
-
(2009)
Biosystems
, vol.95
, pp. 51-60
-
-
Acuña, V.1
Chierichetti, F.2
Lacroix, V.3
Marchetti-Spaccamela, A.4
Sagot, M.F.5
Stougie, L.6
-
2
-
-
43649083387
-
Structural robustness of metabolic networks with respect to multiple knockouts
-
DOI 10.1016/j.jtbi.2007.09.043, PII S0022519307004729
-
Behre J, Wilhelm T, von Kamp A, Ruppin E, Schuster S. 2008. Structural robustness of metabolic networks with respect to multiple knockouts. J Theor Biol 252: 433-441. (Pubitemid 351681901)
-
(2008)
Journal of Theoretical Biology
, vol.252
, Issue.3
, pp. 433-441
-
-
Behre, J.1
Wilhelm, T.2
Von Kamp, A.3
Ruppin, E.4
Schuster, S.5
-
3
-
-
84856878301
-
A fixed-parameter approach for weighted cluster editing
-
Series on Advances in Bioinformatics and Computational Biology. Imperial College Press, London, UK
-
Böcker S, Briesemeister S, Bui QBA, Truß A. 2008. A fixed-parameter approach for weighted cluster editing. In Proceedings of Asia-Pacific Bioinformatics Conference (APBC 2008), volume 5, pp. 211-220. Series on Advances in Bioinformatics and Computational Biology. Imperial College Press, London, UK.
-
(2008)
Proceedings of Asia-Pacific Bioinformatics Conference (APBC 2008)
, vol.5
, pp. 211-220
-
-
Böcker, S.1
Briesemeister, S.2
Bui, Q.B.A.3
Truß, A.4
-
4
-
-
20444363124
-
From genomes to in silico cells via metabolic networks
-
DOI 10.1016/j.copbio.2005.04.008, PII S0958166905000649
-
Borodina I, Nielsen J. 2005. From genomes to in silico cells via metabolic networks. Curr Opin Biotechnol 16: 350-355. (Pubitemid 40806474)
-
(2005)
Current Opinion in Biotechnology
, vol.16
, Issue.3 SPEC. ISS
, pp. 350-355
-
-
Borodina, I.1
Nielsen, J.2
-
6
-
-
0037142769
-
Metabolic pathway analysis of a recombinant yeast for rational strain development
-
DOI 10.1002/bit.10305
-
Carlson R, Fell D, Srienc F. 2002. Metabolic pathway analysis of a recombinant yeast for rational strain development. Biotechnol Bioeng 79: 121-134. (Pubitemid 34693357)
-
(2002)
Biotechnology and Bioengineering
, vol.79
, Issue.2
, pp. 121-134
-
-
Carlson, R.1
Fell, D.2
Srienc, F.3
-
7
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
DOI 10.1006/jtbi.2001.2405
-
Covert MW, Schilling CH, Palsson BØ. 2001. Regulation of gene expression in flux balance models of metabolism. J Theor Biol 213: 73-88. (Pubitemid 33052300)
-
(2001)
Journal of Theoretical Biology
, vol.213
, Issue.1
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
8
-
-
51749113592
-
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
-
Covert MW, Xiao N, Chen TJ, Karr JR. 2008. Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. Bioinformatics 24: 2044-2050.
-
(2008)
Bioinformatics
, vol.24
, pp. 2044-2050
-
-
Covert, M.W.1
Xiao, N.2
Chen, T.J.3
Karr, J.R.4
-
9
-
-
70349638583
-
Calculating the k-shortest elementary flux modes in metabolic networks
-
eds. I Troch and F Breitenecker
-
de Figueiredo LF, Podhorski A, Rubio A, Beasley JE, Schuster S, Planes FJ. 2009. Calculating the k-shortest elementary flux modes in metabolic networks. In Proceedings MATHMOD 09 Vienna - full papers CD volume (eds. I Troch and F Breitenecker), pp. 736-747. http://www.mathmod.at/index.php?id=115.
-
(2009)
Proceedings MATHMOD 09 Vienna - Full Papers CD Volume
, pp. 736-747
-
-
De Figueiredo, L.F.1
Podhorski, A.2
Rubio, A.3
Beasley, J.E.4
Schuster, S.5
Planes, F.J.6
-
11
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
DOI 10.1101/gr.2250904
-
Duarte NC, Herrgård MJ, Palsson BØ. 2004. Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genomescale metabolic model. Genome Res 14: 1298-1309. (Pubitemid 39036129)
-
(2004)
Genome Research
, vol.14
, Issue.7
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.O.3
-
12
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
DOI 10.1073/pnas.0610772104
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ. 2007. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci 104: 1777-1782. (Pubitemid 46239855)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
13
-
-
37849054223
-
Highway or byway: The metabolic role of the GABA shunt in plants
-
Fait A, FrommH,Walter D, Galili G, Fernie AR. 2008. Highway or byway: The metabolic role of the GABA shunt in plants. Trends Plant Sci 13: 14-19.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 14-19
-
-
Fait, A.1
Fromm, H.2
Walter, D.3
Galili, G.4
Fernie, A.R.5
-
14
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
DOI 10.1038/nbt1401, PII NBT1401
-
Feist AM, Palsson BØ. 2008. The growing scope of applications of genomescale metabolic reconstructions using Escherichia coli. Nat Biotechnol 26: 659-667. (Pubitemid 351824691)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.6
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
15
-
-
33645462347
-
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
-
DOI 10.1038/msb4100046, PII M4100046, msb4100046
-
Feist AM, Scholten JCM, Palsson BØ, Brockman FJ, Ideker T. 2006. Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Mol Syst Biol 2: 2006.0004. doi: 10.1038/msb4100046. (Pubitemid 43948148)
-
(2006)
Molecular Systems Biology
, vol.2
-
-
Feist, A.M.1
Scholten, J.C.M.2
Palsson, B.O.3
Brockman, F.J.4
Ideker, T.5
-
16
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
DOI 10.1038/msb4100155, PII MSB4100155
-
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. 2007. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 3: 121. doi: 10.1038/msb4100155. (Pubitemid 47013445)
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
17
-
-
0037335931
-
Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
-
DOI 10.1046/j.1432-1033.2003.03448.x
-
Fischer E, Sauer U. 2003. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem 270: 880-891. (Pubitemid 36315331)
-
(2003)
European Journal of Biochemistry
, vol.270
, Issue.5
, pp. 880-891
-
-
Fischer, E.1
Sauer, U.2
-
18
-
-
13244292328
-
Computation of elementary modes: A unifying framework and the new binary approach
-
DOI 10.1186/1471-2105-5-175
-
Gagneur J, Klamt S. 2004. Computation of elementary modes: A unifying framework and the new binary approach. BMC Bioinformatics 5: 175. doi: 10.1186/1471-2105-5-175. (Pubitemid 40195334)
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 175
-
-
Gagneur, J.1
Klamt, S.2
-
19
-
-
0001301980
-
Glycolate metabolism in Escherichia coli
-
Hansen RW, Hayashi JA. 1962. Glycolate metabolism in Escherichia coli. J Bacteriol 83: 679-687.
-
(1962)
J Bacteriol
, vol.83
, pp. 679-687
-
-
Hansen, R.W.1
Hayashi, J.A.2
-
20
-
-
3242795003
-
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
-
Holzhütter HG. 2004. The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. Eur J Biochem 271: 2905-2922.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2905-2922
-
-
Holzhütter, H.G.1
-
21
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
DOI 10.1093/bioinformatics/btg015
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, et al. 2003. The Systems Biology Markup Language (SBML): A medium for representation and exchange of biochemical network models. Bioinformatics 19: 524-531. (Pubitemid 36336519)
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
Cuellar, A.A.11
Dronov, S.12
Gilles, E.D.13
Ginkel, M.14
Gor, V.15
Goryanin, I.I.16
Hedley, W.J.17
Hodgman, T.C.18
Hofmeyr, J.-H.19
Hunter, P.J.20
Juty, N.S.21
Kasberger, J.L.22
Kremling, A.23
Kummer, U.24
Le Novere, N.25
Loew, L.M.26
Lucio, D.27
Mendes, P.28
Minch, E.29
Mjolsness, E.D.30
Nakayama, Y.31
Nelson, M.R.32
Nielsen, P.F.33
Sakurada, T.34
Schaff, J.C.35
Shapiro, B.E.36
Shimizu, T.S.37
Spence, H.D.38
Stelling, J.39
Takahashi, K.40
Tomita, M.41
Wagner, J.42
Wang, J.43
more..
-
22
-
-
34447317247
-
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
-
DOI 10.1186/1752-0509-1-26
-
Jamshidi N, Palsson BØ. 2007. Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol 1: 26. doi: 10.1186/1752-0509-1-26. (Pubitemid 47055088)
-
(2007)
BMC Systems Biology
, vol.1
, pp. 26
-
-
Jamshidi, N.1
Palsson, B.O.2
-
23
-
-
32144453095
-
Generalized concept of minimal cut sets in biochemical networks
-
DOI 10.1016/j.biosystems.2005.04.009, PII S0303264705001322
-
Klamt S. 2006. Generalized concept of minimal cut sets in biochemical networks. Biosystems 83: 233-247. (Pubitemid 43204329)
-
(2006)
BioSystems
, vol.83
, Issue.2-3 SPEC. ISS
, pp. 233-247
-
-
Klamt, S.1
-
24
-
-
0036039060
-
Combinatorial complexity of pathway analysis in metabolic networks
-
DOI 10.1023/A:1020390132244
-
Klamt S, Stelling J. 2002. Combinatorial complexity of pathway analysis in metabolic networks. Mol Biol Rep 29: 233-236. (Pubitemid 35021891)
-
(2002)
Molecular Biology Reports
, vol.29
, Issue.1-2
, pp. 233-236
-
-
Klamt, S.1
Stelling, J.2
-
25
-
-
31144448020
-
Algorithmic approaches for computing elementary modes in large biochemical reaction networks
-
DOI 10.1049/ip-syb:20050035
-
Klamt S, Gagneur J, von Kamp A. 2005. Algorithmic approaches for computing elementary modes in large biochemical reaction networks. Syst Biol (Stevenage) 152: 249-255. (Pubitemid 43125143)
-
(2005)
IEE Proceedings Systems Biology
, vol.152
, Issue.4
, pp. 249-255
-
-
Klamt, S.1
Gagneur, J.2
Von Kamp, A.3
-
26
-
-
33745136489
-
Metabolic pathway analysis for rational design of L-methionine production by Escherichia coli and Corynebacterium glutamicum
-
DOI 10.1016/j.ymben.2006.02.001, PII S1096717606000097
-
Krömer JO, Wittmann C, Schröder H, Heinzle E. 2006. Metabolic pathway analysis for rational design of L-methionine production by Escherichia coli and Corynebacterium glutamicum. Metab Eng 8: 353-369. (Pubitemid 43903304)
-
(2006)
Metabolic Engineering
, vol.8
, Issue.4
, pp. 353-369
-
-
Kromer, J.O.1
Wittmann, C.2
Schroder, H.3
Heinzle, E.4
-
27
-
-
33644558689
-
13C-labeling experiments
-
DOI 10.1016/j.jbiotec.2005.09.016, PII S0168165605006255
-
Li M, Ho PY, Yao S, Shimizu K. 2006. Effect of lpdA gene knockout on the metabolism in Escherichia coli based on enzyme activities, intracellular metabolite concentrations and metabolic flux analysis by 13C-labeling experiments. J Biotechnol 122: 254-266. (Pubitemid 43306691)
-
(2006)
Journal of Biotechnology
, vol.122
, Issue.2
, pp. 254-266
-
-
Li, M.1
Ho, P.Y.2
Yao, S.3
Shimizu, K.4
-
28
-
-
23844553817
-
Biochemical network models simplified by balanced truncation
-
DOI 10.1111/j.1742-4658.2005.04780.x
-
Liebermeister W, Baur U, Klipp E. 2005. Biochemical network models simplified by balanced truncation. FEBS J 272: 4034-4043. (Pubitemid 41160912)
-
(2005)
FEBS Journal
, vol.272
, Issue.16
, pp. 4034-4043
-
-
Liebermeister, W.1
Baur, U.2
Klipp, E.3
-
29
-
-
0037230473
-
The Common Optimization INterface for Operations Research: Promoting open-source software in the operations research community
-
Lougee-Heimer R. 2003. The Common Optimization INterface for Operations Research: Promoting open-source software in the operations research community. IBM J Res Develop 47: 57-66.
-
(2003)
IBM J Res Develop
, vol.47
, pp. 57-66
-
-
Lougee-Heimer, R.1
-
30
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
DOI 10.1016/j.ymben.2003.09.002
-
Mahadevan R, Schilling CH. 2003. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng 5: 264-276. (Pubitemid 38122488)
-
(2003)
Metabolic Engineering
, vol.5
, Issue.4
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
31
-
-
0030917475
-
Network organization of cell metabolism: Monosaccharide interconversion
-
Nuño JC, Sánchez-Valdenebro I, Pérez-Iratxeta C, Meléndez-Hevia E, Montero F. 1997. Network organization of cell metabolism: Monosaccharide interconversion. Biochem J 324: 103-111. (Pubitemid 27229372)
-
(1997)
Biochemical Journal
, vol.324
, Issue.1
, pp. 103-111
-
-
Nuno, J.C.1
Sanchez-Valdenebro, I.2
Perez-Iratxeta, C.3
Melendez-Hevia, E.4
Montero, F.5
-
32
-
-
35348934254
-
Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data
-
DOI 10.1074/jbc.M703759200
-
Oh YK, Palsson BØ, Park SM, Schilling CH, Mahadevan R. 2007. Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. J Biol Chem 282: 28791-28799. (Pubitemid 47606013)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.39
, pp. 28791-28799
-
-
Oh, Y.-K.1
Palsson, B.O.2
Park, S.M.3
Schilling, C.H.4
Mahadevan, R.5
-
33
-
-
0344052685
-
Metatool: For studying metabolic networks
-
Pfeiffer T, Sánchez-Valdenebro I, Nuño JC, Montero F, Schuster S. 1999. Metatool: For studying metabolic networks. Bioinformatics 15: 251-257.
-
(1999)
Bioinformatics
, vol.15
, pp. 251-257
-
-
Pfeiffer, T.1
Sánchez-Valdenebro, I.2
Nuño, J.C.3
Montero, F.4
Schuster, S.5
-
34
-
-
65649105134
-
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
-
doi: 10.1186/1752-0509-3-38
-
Raghunathan A, Reed J, Shin S, Palsson B, Daefler S. 2009. Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMCSyst Biol 3: 38. doi: 10.1186/1752-0509-3-38.
-
(2009)
BMCSyst Biol
, vol.3
, pp. 38
-
-
Raghunathan, A.1
Reed, J.2
Shin, S.3
Palsson, B.4
Daefler, S.5
-
35
-
-
67449096729
-
Flux balance analysis of biological systems: Applications and challenges
-
Raman K, Chandra N. 2009. Flux balance analysis of biological systems: Applications and challenges. Brief Bioinform 10: 435-449.
-
(2009)
Brief Bioinform
, vol.10
, pp. 435-449
-
-
Raman, K.1
Chandra, N.2
-
37
-
-
0347511691
-
Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration
-
Sauro HM, Hucka M, Finney A, Wellock C, Bolouri H, Doyle J, Kitano H. 2003. Next generation simulation tools: The Systems Biology Workbench and BioSPICE integration. OMICS 7: 355-372. (Pubitemid 38018642)
-
(2003)
OMICS a Journal of Integrative Biology
, vol.7
, Issue.4
, pp. 355-372
-
-
Sauro, H.M.1
Hucka, M.2
Finney, A.3
Wellock, C.4
Bolouri, H.5
Doyle, J.6
Kitano, H.7
-
38
-
-
84889776836
-
Modelling and simulating metabolic networks
-
(ed. T Lengauer), Wiley-VCH, Weinheim, Germany
-
Schuster S, Fell D. 2007. Modelling and simulating metabolic networks. In Bioinformatics: From genomes to therapies (ed. T Lengauer), Vol.2, pp. 755-806. Wiley-VCH, Weinheim, Germany.
-
(2007)
Bioinformatics: From Genomes to Therapies
, vol.2
, pp. 755-806
-
-
Schuster, S.1
Fell, D.2
-
39
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
DOI 10.1016/S0167-7799(98)01290-6, PII S0167779998012906
-
Schuster S, Dandekar T, Fell DA. 1999. Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering. Trends Biotechnol 17: 53-60. (Pubitemid 29332898)
-
(1999)
Trends in Biotechnology
, vol.17
, Issue.2
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
40
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
DOI 10.1038/73786
-
Schuster S, Fell DA, Dandekar T. 2000. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat Biotechnol 18: 326-332. (Pubitemid 30159487)
-
(2000)
Nature Biotechnology
, vol.18
, Issue.3
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
41
-
-
0036680632
-
Applying metabolic pathway analysis to make good use of methanol
-
Schuster S, Klamt S,WeckwerthW, Pfeiffer T. 2002a. Use of network analysis of metabolic systems in bioengineering. Bioprocess Biosyst Eng 24: 363-372. (Pubitemid 34804415)
-
(2002)
Trends in Biotechnology
, vol.20
, Issue.8
, pp. 322
-
-
Schuster, S.1
Klamt, S.2
-
42
-
-
0036188159
-
Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniae
-
Schuster S, Pfeiffer T, Moldenhauer F, Koch I, Dandekar T. 2002b. Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18: 351-361. (Pubitemid 34183123)
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 351-361
-
-
Schuster, S.1
Pfeiffer, T.2
Moldenhauer, F.3
Koch, I.4
Dandekar, T.5
-
43
-
-
10644266747
-
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
-
DOI 10.1038/nature03145
-
Schwender J, Goffman F, Ohlrogge JB, Shachar-Hill Y. 2004. Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432: 779-782. (Pubitemid 39656300)
-
(2004)
Nature
, vol.432
, Issue.7018
, pp. 779-782
-
-
Schwender, J.1
Goffman, F.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
44
-
-
34247183123
-
A genome-scale computational study of the interplay between transcriptional regulation and metabolism
-
DOI 10.1038/msb4100141, PII MSB4100141
-
Shlomi T, Eisenberg Y, Sharan R, Ruppin E. 2007. A genome-scale computational study of the interplay between transcriptional regulation and metabolism. Mol Syst Biol 3: 101. doi: 10.1038/msb4100141. (Pubitemid 46625181)
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 101
-
-
Shlomi, T.1
Eisenberg, Y.2
Sharan, R.3
Ruppin, E.4
-
45
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED. 2002. Metabolic network structure determines key aspects of functionality and regulation. Nature 420: 190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
46
-
-
52949098408
-
Large-scale computation of elementary flux modes with bit pattern trees
-
Terzer M, Stelling J. 2008. Large-scale computation of elementary flux modes with bit pattern trees. Bioinformatics 24: 2229-2235.
-
(2008)
Bioinformatics
, vol.24
, pp. 2229-2235
-
-
Terzer, M.1
Stelling, J.2
-
47
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- And double-deletion mutants
-
DOI 10.1128/JB.187.16.5818-5830.2005
-
Thiele I, Vo TD, Price ND, Palsson BØ. 2005. Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- and double-deletion mutants. J Bacteriol 187: 5818-5830. (Pubitemid 41134320)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.16
, pp. 5818-5830
-
-
Thiele, I.1
Vo, T.D.2
Price, N.D.3
Palsson, B.O.4
-
48
-
-
0036807780
-
Production of cephalosporin C by Acremonium chrysogenum in semisynthetic medium
-
DOI 10.1016/S0032-9592(02)00080-8, PII S0032959202000808
-
Tollnick C, Seidel G, Beyer M, Schügerl K. 2004. Investigations of the production of cephalosporin C by Acremonium chrysogenum. Adv Biochem Eng Biotechnol 86: 1-45. (Pubitemid 35301777)
-
(2002)
Process Biochemistry
, vol.38
, Issue.2
, pp. 263-272
-
-
Jurgens, M.1
Seidel, G.2
Schugerl, K.3
-
49
-
-
58149154663
-
Elementary mode analysis: A useful metabolic pathway analysis tool for characterizing cellular metabolism
-
Trinh CT, Wlaschin A, Srienc F. 2009. Elementary mode analysis: A useful metabolic pathway analysis tool for characterizing cellular metabolism. Appl Microbiol Biotechnol 81: 813-826.
-
(2009)
Appl Microbiol Biotechnol
, vol.81
, pp. 813-826
-
-
Trinh, C.T.1
Wlaschin, A.2
Srienc, F.3
-
50
-
-
0017794395
-
Amino acid biosynthesis and its regulation
-
Umbarger HE. 1978. Amino acid biosynthesis and its regulation. Annu Rev Biochem 47: 532-606.
-
(1978)
Annu Rev Biochem
, vol.47
, pp. 532-606
-
-
Umbarger, H.E.1
-
51
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
DOI 10.1038/nbt1094-994
-
Varma A, Palsson BØ. 1994. Metabolic flux balancing: Basic concepts, scientific and practical use. Technology (NY) 12: 994-998. (Pubitemid 2137400)
-
(1994)
Bio/Technology
, vol.12
, Issue.10
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
52
-
-
33747856186
-
Metatool 5.0: Fast and flexible elementary modes analysis
-
DOI 10.1093/bioinformatics/btl267
-
von Kamp A, Schuster S. 2006. METATOOL 5.0: Fast and flexible elementary modes analysis. Bioinformatics 22: 1930-1931. (Pubitemid 44283044)
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1930-1931
-
-
Von Kamp, A.1
Schuster, S.2
-
53
-
-
0000491361
-
Conversion of fatty acids to carbohydrate; application of isotopes to this problem and role of the Krebs cycle as a synthetic pathway
-
Weinman EO, Srisower EH, Chaikoff IL. 1957. Conversion of fatty acids to carbohydrate; application of isotopes to this problem and role of the Krebs cycle as a synthetic pathway. Physiol Rev 37: 252-272.
-
(1957)
Physiol Rev
, vol.37
, pp. 252-272
-
-
Weinman, E.O.1
Srisower, E.H.2
Chaikoff, I.L.3
-
54
-
-
33847691476
-
Fluxome analysis using GC-MS
-
doi: 10.1186/1475-2859-6-6
-
Wittmann C. 2007. Fluxome analysis using GC-MS. Microb Cell Fact 6: 6. doi: 10.1186/1475-2859-6-6.
-
(2007)
Microb Cell Fact
, vol.6
, pp. 6
-
-
Wittmann, C.1
-
55
-
-
35748959651
-
Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli
-
DOI 10.1016/j.jbiotec.2007.07.495, PII S0168165607009601
-
Wittmann C,Weber J, Betiku E, Krömer J, Böhm D, Rinas U. 2007. Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli. J Biotechnol 132: 375-384. (Pubitemid 350051068)
-
(2007)
Journal of Biotechnology
, vol.132
, Issue.4
, pp. 375-384
-
-
Wittmann, C.1
Weber, J.2
Betiku, E.3
Kromer, J.4
Bohm, D.5
Rinas, U.6
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