-
1
-
-
0004267646
-
-
Princeton: Princeton University Press
-
Rockafellar RT: Convex analysis Princeton: Princeton University Press; 1970.
-
(1970)
Convex Analysis
-
-
Rockafellar, R.T.1
-
2
-
-
0033136109
-
Metabolic pathway analysis: Basic concepts and scientific applications in the post-genomic era
-
Schilling CH, Schuster S, Palsson BO, Heinrich R: Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era. Biotechnol Prog 1999, 15:296-303.
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 296-303
-
-
Schilling, C.H.1
Schuster, S.2
Palsson, B.O.3
Heinrich, R.4
-
3
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
Schuster S, Dandekar T, Fell DA: Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol 1999, 17: 3-60.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
4
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster S, Fell DA, Dandekar T: A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat Biotechnol 2000, 18: 26-332.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
5
-
-
0037727678
-
Metabolic pathways in the post-genome era
-
Papin JA, Price ND, Wiback SJ, Fell DA, Palsson BO: Metabolic pathways in the post-genome era. Trends Biochem Sci 2003, 28:250-258.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 250-258
-
-
Papin, J.A.1
Price, N.D.2
Wiback, S.J.3
Fell, D.A.4
Palsson, B.O.5
-
6
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady tate
-
Schuster S, Hilgetag C: On elementary flux modes in biochemical reaction systems at steady tate. J Biol Syst 1994, 2:165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
7
-
-
0036691976
-
Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism
-
Schuster S, Hilgetag C, Woods JH, Fell DA: Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J Math Biol 2002, 45:153-181.
-
(2002)
J. Math. Biol.
, vol.45
, pp. 153-181
-
-
Schuster, S.1
Hilgetag, C.2
Woods, J.H.3
Fell, D.A.4
-
8
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling CH, Letscher D, Palsson BO: Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J Theor Biol 2000, 203:229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
9
-
-
3342925846
-
Comparison of network-based pathway analysis methods
-
Papin JA, Stelling J, Price ND, Klamt S, Schuster S, Palsson BO: Comparison of network-based pathway analysis methods. Trends Biotechnol 2004, 22:400-405.
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 400-405
-
-
Papin, J.A.1
Stelling, J.2
Price, N.D.3
Klamt, S.4
Schuster, S.5
Palsson, B.O.6
-
10
-
-
0037308505
-
Two approaches for metabolic pathway analysis?
-
Klamt S, Stelling J: Two approaches for metabolic pathway analysis? Trends Biotechnol 2003, 21:64-69.
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 64-69
-
-
Klamt, S.1
Stelling, J.2
-
11
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED: Metabolic network structure determines key aspects of functionality and regulation. Nature 2002, 420:190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
12
-
-
0036100243
-
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis
-
Price ND, Papin JA, Palsson BO: Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. Genome Res 2002, 12:760-769.
-
(2002)
Genome Res.
, vol.12
, pp. 760-769
-
-
Price, N.D.1
Papin, J.A.2
Palsson, B.O.3
-
13
-
-
0036350955
-
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy
-
Papin JA, Price ND, Edwards JS, Palsson BB: The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. J Theor Biol 2002, 215:67-82.
-
(2002)
J. Theor. Biol.
, vol.215
, pp. 67-82
-
-
Papin, J.A.1
Price, N.D.2
Edwards, J.S.3
Palsson, B.B.4
-
14
-
-
0035725112
-
Use of network analysis of metabolic systems in Bioengineering
-
Schuster S, Klamt S, Weckwerth W, Moldenhauer F, Pfeiffer T: Use of network analysis of metabolic systems in Bioengineering. Bioproc Biosyst Eng 2002, 24:363-372.
-
(2002)
Bioproc. Biosyst. Eng.
, vol.24
, pp. 363-372
-
-
Schuster, S.1
Klamt, S.2
Weckwerth, W.3
Moldenhauer, F.4
Pfeiffer, T.5
-
15
-
-
2342419140
-
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks
-
Cakir T, Kirdar B, Ulgen KO: Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks. Biotechnol Bioeng 2004, 86:251-260.
-
(2004)
Biotechnol. Bioeng.
, vol.86
, pp. 251-260
-
-
Cakir, T.1
Kirdar, B.2
Ulgen, K.O.3
-
16
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin JA, Price ND, Palsson BO: Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res 2002, 12:1889-1900.
-
(2002)
Genome Res.
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
17
-
-
1242274402
-
Flux coupling analysis of genome-scale metabolic network reconstructions
-
Burgard AP, Nikolaev EV, Schilling CH, Maranas CD: Flux coupling analysis of genome-scale metabolic network reconstructions. Genome Res 2004, 14:301-312.
-
(2004)
Genome Res.
, vol.14
, pp. 301-312
-
-
Burgard, A.P.1
Nikolaev, E.V.2
Schilling, C.H.3
Maranas, C.D.4
-
18
-
-
0036840340
-
Extreme pathways and Kirchhoff's second law
-
Price ND, Famili I, Beard DA, Palsson BO: Extreme pathways and Kirchhoff's second law. Biophys J 2002, 83:2879-2882.
-
(2002)
Biophys. J.
, vol.83
, pp. 2879-2882
-
-
Price, N.D.1
Famili, I.2
Beard, D.A.3
Palsson, B.O.4
-
19
-
-
0036286631
-
Energy balance for analysis of complex metabolic networks
-
Beard DA, Liang SD, Qian H: Energy balance for analysis of complex metabolic networks. Biophys J 2002, 83:79-86.
-
(2002)
Biophys. J.
, vol.83
, pp. 79-86
-
-
Beard, D.A.1
Liang, S.D.2
Qian, H.3
-
20
-
-
0037424661
-
Constraints-based models: Regulation of gene expression reduces the steady-state solution space
-
Covert MW, Palsson BO: Constraints-based models: regulation of gene expression reduces the steady-state solution space. J Theor Biol 2003, 221:309-325.
-
(2003)
J. Theor. Biol.
, vol.221
, pp. 309-325
-
-
Covert, M.W.1
Palsson, B.O.2
-
21
-
-
1042269472
-
Minimal cut sets in biochemical reaction networks
-
Klamt S, Gilles ED: Minimal cut sets in biochemical reaction networks. Bioinformatics 2004, 20:226-234.
-
(2004)
Bioinformatics
, vol.20
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
22
-
-
0142092727
-
Reconstructing metabolic flux vectors from extreme pathways: Defining the alphaspectrum
-
Wiback SJ, Mahadevan R, Palsson BO: Reconstructing metabolic flux vectors from extreme pathways: defining the alphaspectrum. J Theor Biol 2003, 224:313-324.
-
(2003)
J. Theor. Biol.
, vol.224
, pp. 313-324
-
-
Wiback, S.J.1
Mahadevan, R.2
Palsson, B.O.3
-
23
-
-
0036039060
-
Combinatorial complexity of pathway analysis in metabolic networks
-
Klamt S, Stelling J: Combinatorial complexity of pathway analysis in metabolic networks. Mol Biol Rep 2002, 29: 33-236.
-
(2002)
Mol. Biol. Rep.
, vol.29
, pp. 233-236
-
-
Klamt, S.1
Stelling, J.2
-
24
-
-
1442337345
-
Nullspace Approach to Determine the Elementary Modes of Chemical Reaction Systems
-
Wagner C: Nullspace Approach to Determine the Elementary Modes of Chemical Reaction Systems. J Phys Chem B 2004, 108: 425-2431.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 2425-2431
-
-
Wagner, C.1
-
25
-
-
84947909628
-
Double Description method revisited
-
Edited by: Deza M, Euler R, Manoussakis I. Springer-Verlag
-
Fukuda K, Prodon A: Double Description method revisited. In Combinatorics and Computer Science Volume 1120. Edited by: Deza M, Euler R, Manoussakis I. Springer-Verlag; 1996:91-111.
-
(1996)
Combinatorics and Computer Science Volume 1120
, pp. 91-111
-
-
Fukuda, K.1
Prodon, A.2
-
27
-
-
0023714694
-
Stoichiometric network analysis
-
Clarke BL: Stoichiometric network analysis. Cell Biophys 1988, 12:237-253.
-
(1988)
Cell Biophys.
, vol.12
, pp. 237-253
-
-
Clarke, B.L.1
-
29
-
-
0344052685
-
METATOOL: For studying metabolic networks
-
Pfeiffer T, Sanchez-Valdenebro I, Nuno JC, Montero F, Schuster S: METATOOL: for studying metabolic networks. Bioinformatics 1999, 15:251-257.
-
(1999)
Bioinformatics
, vol.15
, pp. 251-257
-
-
Pfeiffer, T.1
Sanchez-Valdenebro, I.2
Nuno, J.C.3
Montero, F.4
Schuster, S.5
-
30
-
-
0037316342
-
FluxAnalyzer: Exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps
-
Klamt S, Stelling J, Ginkel M, Gilles ED: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 2003, 19: 61-269.
-
(2003)
Bioinformatics
, vol.19
, pp. 261-269
-
-
Klamt, S.1
Stelling, J.2
Ginkel, M.3
Gilles, E.D.4
-
32
-
-
0001125440
-
Detecting strictly detailed balanced subnetwroks in open chemical reaction networks
-
Schuster S, Schuster R: Detecting strictly detailed balanced subnetwroks in open chemical reaction networks. J Math Chem 1991, 6:17-40.
-
(1991)
J. Math. Chem.
, vol.6
, pp. 17-40
-
-
Schuster, S.1
Schuster, R.2
-
33
-
-
84874654902
-
-
lrs homepage
-
lrs homepage [http://cgm.cs.mcgill.ca/~avis/C/lrs.html]
-
-
-
-
34
-
-
84874651492
-
-
FluxAnalyzer homepage
-
FluxAnalyzer homepage [http://www.mpi-magdeburg.mpg.de/project/fluxanalyzer]
-
-
-
-
36
-
-
2342627280
-
Thermodynamic constraints for biochemical networks
-
Beard DA, Babson E, Curtis E, Qian H: Thermodynamic constraints for biochemical networks. J Theor Biol 2004, 228: 27-333.
-
(2004)
J. Theor. Biol.
, vol.228
, pp. 327-333
-
-
Beard, D.A.1
Babson, E.2
Curtis, E.3
Qian, H.4
-
37
-
-
34249842390
-
A pivoting algorithm for convex hulls and vertex enumeration of arrangements and polyhedra
-
Avis D, Fukuda K: A pivoting algorithm for convex hulls and vertex enumeration of arrangements and polyhedra. Discrete Comput Geom 1992, 8:295-313.
-
(1992)
Discrete Comput. Geom.
, vol.8
, pp. 295-313
-
-
Avis, D.1
Fukuda, K.2
-
38
-
-
84874665374
-
Parallel Out-of-core Algorithm for Genome-scale Enumeration of Metabolic Systemic Pathways
-
HiCOMB 2002 Fort Lauderdale, FL, USA
-
Samatova NF, Geist A, Ostrouchov G, Melechko A: Parallel Out-of-core Algorithm for Genome-scale Enumeration of Metabolic Systemic Pathways. In HiCOMB 2002 Fort Lauderdale, FL, USA 2002.
-
(2002)
-
-
Samatova, N.F.1
Geist, A.2
Ostrouchov, G.3
Melechko, A.4
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