Targeting and clustering of IP3 receptors: Key determinants of spatially organized Ca2+ signals

Chaos

Volumn 19, Issue 3, 2009, Pages

  Taylor, Colin W ^a   Taufiq Ur Rahman, ^a   Pantazaka, Evangelia ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR;

ALGORITHM; ANIMAL; BIOLOGICAL MODEL; BIOLOGICAL RHYTHM; CALCIUM SIGNALING; CHANNEL GATING; COMPUTER SIMULATION; HUMAN; METHODOLOGY; NONLINEAR SYSTEM; OSCILLOMETRY; PHYSIOLOGY; REVIEW; STATISTICAL MODEL;

ALGORITHMS; ANIMALS; BIOLOGICAL CLOCKS; CALCIUM SIGNALING; COMPUTER SIMULATION; HUMANS; INOSITOL 1,4,5-TRISPHOSPHATE RECEPTORS; ION CHANNEL GATING; MODELS, BIOLOGICAL; MODELS, STATISTICAL; NONLINEAR DYNAMICS; OSCILLOMETRY;

EID: 70349633991     PISSN: 10541500     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3127593     Document Type: Article

References (110)

1. O. V. Gerasimenko, J. V. Gerasimenko, P. V. Belan, and O. H. Petersen, Cell 0092-8674 84, 473 (1996). 10.1016/S0092-8674(00)81292-1
2. D. I. Yule, S. A. Ernst, H. Ohnishi, and R. J. H. Wojcikiewicz, J. Biol. Chem. 0021-9258 272, 9093 (1997). 10.1074/jbc.272.14.9093 (Pubitemid 27154912)
3. K. J. Mitchell, P. Pinton, A. Varadi, C. Tacchetti, E. K. Ainscow, T. Pozzan, R. Rizzuto, and G. A. Rutter, J. Cell Biol. 0021-9525 155, 41 (2001). 10.1083/jcb.200103145 (Pubitemid 34286206)
4. O. V. Gerasimenko, J. V. Gerasimenko, A. V. Tepikin, and O. H. Petersen, Cell 0092-8674 80, 439 (1995). 10.1016/0092-8674(95)90494-8
5. W. Echevarria, M. F. Leite, M. T. Guerra, W. R. Zipfel, and M. H. Nathanson, Nat. Cell Biol. 1465-7392 5, 440 (2003). 10.1038/ncb980 (Pubitemid 36592267)
6. P. Pinton, T. Pozzan, and R. Rizzuto, EMBO J. 0261-4189 17, 5298 (1998). 10.1093/emboj/17.18.5298 (Pubitemid 28427045)
7. G. C. Churchill, Y. Okada, J. M. Thomas, A. A. Genazzani, S. Patel, and A. Galione, Cell 0092-8674 111, 703 (2002). 10.1016/S0092-8674(02)01082-6 (Pubitemid 35441251)
8. M. J. Berridge, P. Lipp, and M. D. Bootman, Nat. Rev. Mol. Cell Biol. 1471-0072 1, 11 (2000). 10.1038/35036035
9. R. S. Lewis, Nature (London) 0028-0836 446, 284 (2007). 10.1038/nature05637 (Pubitemid 46426160)
10. A. B. Parekh and J. W. Putney, Physiol. Rev. 0031-9333 85, 757 (2005). 10.1152/physrev.00057.2003 (Pubitemid 40404641)
11. Y. Kirichok, G. Krapavinsky, and D. E. Clapham, Nature (London) 0028-0836 427, 360 (2004). 10.1038/nature02246 (Pubitemid 38133664)
12. M. Trenker, R. Malli, I. Fertschai, S. Levak-Frank, and W. F. Graier, Nat. Cell Biol. 1465-7392 9, 445 (2007). 10.1038/ncb1556 (Pubitemid 46511078)
13. T. Hayashi, R. Rizzuto, G. Hajnoczky, and T. P. Su, Trends Cell Biol. 19, 81 (2009). 10.1016/j.tcb.2008.12.002
14. O. M. de Brito and L. Scorrano, Nature (London) 0028-0836 456, 605 (2008). 10.1038/nature07534
15. R. Rizzuto, P. Pinton, W. Carrington, F. S. Fay, K. E. Fogarty, L. M. Lifshitz, R. A. Tuft, and T. Pozzan, Science 0036-8075 280, 1763 (1998). 10.1126/science.280.5370.1763 (Pubitemid 28283502)
16. R. Rizzuto and T. Pozzan, Physiol. Rev. 0031-9333 86, 369 (2006). 10.1152/physrev.00004.2005
17. D. Poburko, C. H. Liao, C. van Breemen, and N. Demaurex, Circ. Res. 0009-7330 104, 104 (2009). 10.1161/CIRCRESAHA.108.180612
18. W. F. Graier, M. Frieden, and R. Malli, Pfluegers Arch. 0031-6768 455, 375 (2007). 10.1007/s00424-007-0296-1 (Pubitemid 47624192)
19. R. Malli, M. Frieden, M. Trenker, and W. F. Graier, J. Biol. Chem. 0021-9258 280, 12114 (2005). 10.1074/jbc.M409353200
20. D. Poburko, K. -S. Kuo, J. Dai, C.-H. Lee, and C. van Breemen, Trends Pharmacol. Sci. 0165-6147 25, 8 (2004). 10.1016/j.tips.2003.10.011 (Pubitemid 38076951)
21. M. Falcke, M. Or-Guil, and M. Bar, Phys. Rev. Lett. 0031-9007 84, 4753 (2000). 10.1103/PhysRevLett.84.4753
22. D. Willoughby and D. M. Cooper, Physiol. Rev. 0031-9333 87, 965 (2007). 10.1152/physrev.00049.2006 (Pubitemid 47084674)
23. W. -H. Li, J. Llopis, M. Whitney, G. Zlokarnik, and R. Y. Tsien, Nature (London) 0028-0836 392, 936 (1998). 10.1038/31965 (Pubitemid 28232067)
24. R. E. Dolmetsch, R. S. Lewis, C. C. Goodnow, and J. I. Healy, Nature (London) 0028-0836 386, 855 (1997). 10.1038/386855a0
25. Z. Zhou and I. Neher, J. Physiol. (London) 0022-3751 469, 245 (1993).
26. L. Fierro and I. Llano, J. Physiol. (London) 0022-3751 496, 617 (1996).
27. N. L. Allbritton, T. Meyer, and L. Stryer, Science 0036-8075 258, 1812 (1992). 10.1126/science.1465619
28. C. W. Taylor, A. A. Genazzani, and S. A. Morris, Cell Calcium 0143-4160 26, 237 (1999). 10.1054/ceca.1999.0090 (Pubitemid 30037825)
29. I. Bosanac, J. -R. Alattia, T. K. Mal, J. Chan, S. Talarico, F. K. Tong, K. I. Tong, F. Yoshikawa, T. Furuichi, M. Iwai, T. Michikawa, K. Mikoshiba, and M. Ikura, Nature (London) 0028-0836 420, 696 (2002). 10.1038/nature01268 (Pubitemid 36764504)
30. I. Bosanac, H. Yamazaki, T. Matsu-ura, M. Michikawa, K. Mikoshiba, and M. Ikura, Mol. Cell 1097-2765 17, 193 (2005). 10.1016/j.molcel.2004.11.047 (Pubitemid 40138615)
31. Z. T. Schug, P. C. da Fonseca, C. D. Bhanumathy, L. Wagner II, X. Zhang, B. Bailey, E. P. Morris, D. I. Yule, and S. K. Joseph, J. Biol. Chem. 0021-9258 283, 2939 (2008). 10.1074/jbc.M706645200
32. R. MacKinnon, Angew. Chem., Int. Ed. Engl. 43, 4265 (2004). 10.1002/anie.200400662 (Pubitemid 39257401)
33. C. W. Taylor, P. C. A. da Fonseca, and E. P. Morris, Trends Biochem. Sci. 0167-7640 29, 210 (2004). 10.1016/j.tibs.2004.02.010 (Pubitemid 38472026)
34. J. Chan, A. E. Whitten, C. M. Jeffries, I. Bosanac, T. K. Mal, J. Ito, H. Porumb, T. Michikawa, K. Mikoshiba, J. Trewhella, and M. Ikura, J. Mol. Biol. 0022-2836 373, 1269 (2007). 10.1016/j.jmb.2007.08.057 (Pubitemid 47539486)
35. 3 receptor activation.," Nat. Chem. Biol. (unpublished).
36. D. Boehning and S. K. Joseph, EMBO J. 0261-4189 19, 5450 (2000). 10.1093/emboj/19.20.5450
37. T. Meyer, D. Holowka, and L. Stryer, Science 0036-8075 240, 653 (1988). 10.1126/science.2452482
38. J. S. Marchant and C. W. Taylor, Curr. Biol. 0960-9822 7, 510 (1997). 10.1016/S0960-9822(06)00222-3
39. J. K. Foskett, C. White, K. H. Cheung, and D. O. Mak, Physiol. Rev. 0031-9333 87, 593 (2007). 10.1152/physrev.00035.2006 (Pubitemid 47084681)
40. D. Gillespie and M. Fill, Biophys. J. 0006-3495 95, 3706 (2008). 10.1529/biophysj.108.131987
41. C. W. Taylor and A. J. Laude, Cell Calcium 0143-4160 32, 321 (2002). 10.1016/S0143416002001859 (Pubitemid 36175753)
42. I. C. B. Marshall and C. W. Taylor, Biochem. J. 0264-6021 301, 591 (1994).
43. R. L. Patterson, D. Boehning, and S. H. Snyder, Annu. Rev. Biochem. 0066-4154 73, 437 (2004). 10.1146/annurev.biochem.73.071403.161303 (Pubitemid 39050376)
44. E. Vermassen, J. B. Parys, and J. -P. Mauger, Biol. Cell 0248-4900 96, 3 (2004). 10.1016/j.biolcel.2003.11.004 (Pubitemid 38240394)
45. R. J. H. Wojcikiewicz, J. Biol. Chem. 0021-9258 270, 11678 (1995). 10.1074/jbc.270.19.11678
46. H. De Smedt, L. Missiaen, J. B. Parys, R. H. Henning, I. Sienaert, S. Vanlingen, A. Gijsens, B. Himpens, and R. Caseels, Biochem. J. 0264-6021 322, 575 (1997).
47. O. Blondel, J. Takeda, H. Janssen, S. Seino, and G. I. Bell, J. Biol. Chem. 0021-9258 268, 11356 (1993).
48. P. N. Tasker, F. Michelangeli, and G. F. Nixon, Circ. Res. 0009-7330 84, 536 (1999).
49. C. Rosker, G. Meur, E. J. A. Taylor, and C. W. Taylor, J. Biol. Chem. 0021-9258 284, 5186 (2009). 10.1074/jbc.M805587200
50. M. R. Regan, D. D. Lin, M. C. Emerick, and W. S. Agnew, Proteins 0887-3585 59, 312 (2005). 10.1002/prot.20225 (Pubitemid 40471569)
51. V. Goder, P. Crottet, and M. Spiess, EMBO J. 0261-4189 19, 6704 (2000). 10.1093/emboj/19.24.6704 (Pubitemid 32011663)
52. A. K. T. Parker, F. V. Gergely, and C. W. Taylor, J. Biol. Chem. 0021-9258 279, 23797 (2004). 10.1074/jbc.M402098200 (Pubitemid 38685697)
53. L. G. Sayers, A. Miyawaki, A. Muto, H. Takeshita, A. Yamamoto, T. Michikawa, T. Furuichi, and K. Mikoshiba, Biochem. J. 0264-6021 323, 273 (1997).
54. G. A. Mignery and T. C. Südhof, EMBO J. 0261-4189 9, 3893 (1990).
55. S. K. Joseph, D. Boehning, S. Pierson, and C. V. Nicchitta, J. Biol. Chem. 0021-9258 272, 1579 (1997). 10.1074/jbc.272.3.1579 (Pubitemid 27043238)
56. D. L. Galvan, E. Borrego-Diaz, P. J. Perez, and G. A. Mignery, J. Biol. Chem. 0021-9258 274, 29483 (1999). 10.1074/jbc.274.41.29483 (Pubitemid 29477121)
57. M. Halic, M. Gartmann, O. Schlenker, T. Mielke, M. R. Pool, I. Sinning, and R. Beckmann, Science 0036-8075 312, 745 (2006). 10.1126/science.1124864
58. T. A. Rapoport, Nature (London) 0028-0836 450, 663 (2007). 10.1038/nature06384 (Pubitemid 350207698)
59. R. D. Teasdale and M. R. Jackson, Annu. Rev. Cell Dev. Biol. 1081-0706 12, 27 (1996). 10.1146/annurev.cellbio.12.1.27 (Pubitemid 26422708)
60. E. Szczesna-Skorupa and B. Kemper, J. Biol. Chem. 0021-9258 275, 19409 (2000). 10.1074/jbc.M002394200 (Pubitemid 30422917)
61. M. Scott, G. Lu, M. Hallett, and D. Y. Thomas, Bioinformatics 1367-4803 20, 937 (2004). 10.1093/bioinformatics/bth010 (Pubitemid 38559736)
62. S. Zhang, A. Mizutani, C. Hisatsune, T. Higo, H. Bannai, T. Nakayama, M. Hattori, and K. Mikoshiba, J. Biol. Chem. 0021-9258 278, 4048 (2003). 10.1074/jbc.M209960200 (Pubitemid 36801139)
63. L. Fagni, P. F. Worley, and F. Ango, Sci. STKE 1525-8882 2002, RE8 (2002). 10.1126/stke.2002.137.re8
64. J. A. Allen, R. A. Halverson-Tamboli, and M. M. Rasenick, Nat. Rev. Neurosci. 1471-003X 8, 128 (2007). 10.1038/nrn2059 (Pubitemid 46146951)
65. M. Prakriya, S. Feske, Y. Gwack, S. Srikanth, A. Rao, and P. G. Hogan, Nature (London) 0028-0836 443, 230 (2006). 10.1038/nature05122 (Pubitemid 44387613)
66. P. G. Hogan and A. Rao, Trends Biochem. Sci. 0167-7640 32, 235 (2007). 10.1016/j.tibs.2007.03.009 (Pubitemid 46694334)
67. A. Penna, A. Demuro, A. V. Yeromin, S. L. Zhang, O. Safrina, I. Parker, and M. D. Cahalan, Nature (London) 0028-0836 456, 116 (2008). 10.1038/nature07338
68. O. Dellis, S. Dedos, S. C. Tovey, T.-U. Rahman, S. J. Dubel, and C. W. Taylor, Science 0036-8075 313, 229 (2006). 10.1126/science.1125203 (Pubitemid 44066255)
69. G. Vazquez, B. J. Wedel, G. S. J. Bird, S. K. Joseph, and J. W. Putney, EMBO J. 0261-4189 21, 4531 (2002). 10.1093/emboj/cdf467 (Pubitemid 34984340)
70. O. Dellis, A. M. Rossi, S. G. Dedos, and C. W. Taylor, J. Biol. Chem. 0021-9258 283, 751 (2008). 10.1074/jbc.M706960200
71. M. D. Bootman and M. J. Berridge, Curr. Biol. 0960-9822 6, 855 (1996). 10.1016/S0960-9822(02)00609-7 (Pubitemid 26324629)
72. M. D. Bootman, M. J. Berridge, and P. Lipp, Cell 0092-8674 91, 367 (1997). 10.1016/S0092-8674(00)80420-1 (Pubitemid 27467967)
73. H. Cheng, W. J. Lederer, and M. B. Cannell, Science 0036-8075 262, 740 (1993). 10.1126/science.8235594
74. J. H. Horne and T. Meyer, Science 0036-8075 276, 1690 (1997). 10.1126/science.276.5319.1690 (Pubitemid 27421974)
75. I. Parker, J. Choi, and Y. Yao, Cell Calcium 0143-4160 20, 105 (1996). 10.1016/S0143-4160(96)90100-1 (Pubitemid 26326563)
76. Y. Yao, J. Choi, and I. Parker, J. Physiol. (London) 0022-3751 482, 533 (1995).
77. M. D. Bootman, E. Niggli, M. J. Berridge, and P. Lipp, J. Physiol. (London) 0022-3751 499, 307 (1997).
78. X. -P. Sun, N. Callamaras, J. S. Marchant, and I. Parker, J. Physiol. (London) 0022-3751 509, 67 (1998). 10.1111/j.1469-7793.1998.067bo.x (Pubitemid 28252012)
79. M. J. Berridge, J. Physiol. (London) 0022-3751 499, 291 (1997).
80. I. Parker and Y. Yao, J. Physiol. (London) 0022-3751 491, 663 (1996).
81. H. J. Rose, S. Dargan, J. Shuai, and I. Parker, Biophys. J. 0006-3495 91, 4024 (2006). 10.1529/biophysj.106.088872 (Pubitemid 44887262)
82. C. E. Adkins and C. W. Taylor, Curr. Biol. 0960-9822 9, 1115 (1999). 10.1016/S0960-9822(99)80481-3 (Pubitemid 29504482)
83. L. Ionescu, K. H. Cheung, H. Vais, D. O. Mak, C. White, and J. K. Foskett, J. Physiol. (London) 0022-3751 573, 645 (2006). 10.1113/jphysiol.2006. 109504 (Pubitemid 43842508)
84. M. D. Bootman and M. J. Berridge, Cell 0092-8674 83, 675 (1995). 10.1016/0092-8674(95)90179-5
85. N. Callamaras, J. S. Marchant, X. -P. Sun, and I. Parker, J. Physiol. (London) 0022-3751 509, 81 (1998). 10.1111/j.1469-7793.1998.081bo.x (Pubitemid 28252013)
86. P. Lipp and E. Niggli, Prog. Biophys. Mol. Biol. 0079-6107 65, 265 (1996). 10.1016/S0079-6107(96)00014-4 (Pubitemid 27164641)
87. S. Swillens, G. Dupont, L. Combettes, and P. Champeil, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 96, 13750 (1999). 10.1073/pnas.96.24.13750
88. J. -W. Shuai and P. Jung, Biophys. J. 0006-3495 83, 87 (2002). 10.1016/S0006-3495(02)75151-5
89. R. Thul and M. Falcke, Phys. Rev. E 1063-651X 73, 061923 (2006). 10.1103/PhysRevE.73.061923 (Pubitemid 43991882)
90. J. S. Marchant and I. Parker, J. Gen. Physiol. 0022-1295 116, 691 (2000). 10.1085/jgp.116.5.691
91. J. Shuai, H. J. Rose, and I. Parker, Biophys. J. 0006-3495 91, 4033 (2006). 10.1529/biophysj.106.088880 (Pubitemid 44887263)
92. M. Chalmers, M. J. Schell, and P. Thorn, Biochem. J. 0264-6021 394, 57 (2006). 10.1042/BJ20051130 (Pubitemid 43259656)
93. M. Iwai, Y. Tateishi, M. Hattori, A. Mizutani, T. Nakamura, A. Futatsugi, T. Inoue, T. Furuichi, T. Michikawa, and K. Mikoshiba, J. Biol. Chem. 0021-9258 280, 10305 (2005). 10.1074/jbc.M413824200 (Pubitemid 40395887)
94. Y. Tateishi, M. Hattori, T. Nakayama, M. Iwai, H. Bannai, T. Nakamura, T. Michikawa, T. Inoue, and K. Mikoshiba, J. Biol. Chem. 0021-9258 280, 6816 (2005). 10.1074/jbc.M405469200 (Pubitemid 40341236)
95. B. S. Wilson, J. R. Pfeiffer, A. J. Smith, J. M. Oliver, J. A. Oberdorf, and R. J. H. Wojcikiewicz, Mol. Biol. Cell 1059-1524 9, 1465 (1998).
96. P. C. A. da Fonseca, S. A. Morris, E. P. Nerou, C. W. Taylor, and E. P. Morris, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 100, 3936 (2003). 10.1073/pnas.0536251100 (Pubitemid 36418135)
97. E. A. Jonas, R. J. Knox, and L. Kaczmarek, Neuron 0896-6273 19, 7 (1997). 10.1016/S0896-6273(00)80343-8 (Pubitemid 27332989)
98. T. -U. Rahman, A. Skupin, M. Falcke, and C. W. Taylor, Nature (London) 0028-0836 458, 655 (2009). 10.1038/nature07763
99. L. Stehno-Bittel, A. Lückhoff, and D. E. Clapham, Neuron 0896-6273 14, 163 (1995). 10.1016/0896-6273(95)90250-3
100. D. O. Mak, S. McBride, V. Raghuram, Y. Yue, S. K. Joseph, and J. K. Foskett, J. Gen. Physiol. 0022-1295 115, 241 (2000). 10.1085/jgp.115.3.241
101. D. -O. D. Mak and J. K. Foskett, J. Gen. Physiol. 0022-1295 109, 571 (1997). 10.1085/jgp.109.5.571
102. M. Ferreri-Jacobia, D. -O. D. Mak, and J. K. Foskett, J. Biol. Chem. 0021-9258 280, 3824 (2005). 10.1074/jbc.M409462200 (Pubitemid 40223852)
103. I. Parker, Y. Yao, and V. Ilyin, Biophys. J. 0006-3495 70, 222 (1996). 10.1016/S0006-3495(96)79565-6
104. J. Shuai, J. Pearson, J. K. Foskett, D. O. Mak, and I. Parker, Biophys. J. 0006-3495 93, 1151 (2007). 10.1529/biophysj.107.108795 (Pubitemid 47330895)
105. J. Shuai, J. E. Pearson, and I. Parker, Biophys. J. 0006-3495 95, 3738 (2008). 10.1529/biophysj.108.137182
106. J. W. Shuai and P. Jung, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 100, 506 (2003). 10.1073/pnas.0236032100 (Pubitemid 36126081)
107. J. S. Marchant and I. Parker, EMBO J. 0261-4189 20, 65 (2001). 10.1093/emboj/20.1.65 (Pubitemid 32099103)
108. S. L. Dargan and I. Parker, J. Physiol. (London) 0022-3751 553, 775 (2003). 10.1113/jphysiol.2003.054247 (Pubitemid 38035621)
109. E. Katayama, H. Funashashi, T. Michikawa, T. Shiraishi, T. Ikemoto, M. Iino, K. Hirosawa, and K. Mikoshiba, EMBO J. 0261-4189 15, 4844 (1996).
110. I. Bezprozvanny and B. E. Ehrlich, J. Gen. Physiol. 0022-1295 104, 821 (1994). 10.1085/jgp.104.5.821