A kinetic model of single and clustered IP3 receptors in the absence of Ca2+ feedback

Biophysical Journal

Volumn 93, Issue 4, 2007, Pages 1151-1162

  Shuai, Jianwei ^a   Pearson, John E ^b   Foskett, J Kevin ^c   Mak, Don On Daniel ^c   Parker, Ian ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR;

ANIMAL CELL; ARTICLE; BINDING SITE; CALCIUM BINDING; CALCIUM CELL LEVEL; CALCIUM HOMEOSTASIS; CALCIUM MOBILIZATION; CALCIUM SIGNALING; CALCIUM TRANSPORT; CELL ISOLATION; CHANNEL GATING; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; FEEDBACK SYSTEM; LATENT PERIOD; MEASUREMENT; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; PATCH CLAMP; POPULATION RESEARCH; PROBABILITY; STOCHASTIC MODEL;

NEPTUNIA;

EID: 34548231038     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.108795     Document Type: Article

References (31)

1. 2+ release channels. Physiol. Rev. 87:593-658.
2. 3 receptors: the search for structure. Trends Biochem. Sci. 29:210-219.
3. Bosanac, I., J. R. Alattia, T. K. Mal, J. Chan, S. Talarico, F. K. Tong, K. I. Tong, F. Yoshikawa, T. Furuichi, M. Iwai, T. Michikawa, K. Mikoshiba, and M. Ikura. 2002. Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand. Nature. 420:696-700.
4. Bezprozvanny, I. 2005. The inositol 1,4,5-trisphosphate receptors. Cell Calcium. 38:261-272.
5. 3- and calcium-gated channels from endoplasmic reticulum of cerebellum. Nature. 351:751-754.
6. 2+ evoked by inositol trisphosphate in Xenopus oocytes. Journal of Physiology-London. 482:533-553.
7. 2+ signals in Xenopus oocytes. Journal of Physiology-London. 509:81-91.
8. Parker, I., Y. Yao, and V. Ilyin. 1996. Fast kinetics of calcium liberation induced in Xenopus oocytes by photoreleased inositol trisphosphate. Biophys. J. 70:222-237.
9. Mak, D. O., and J. K. Foskett. 1994. Single-channel inositol 1,4,5-trisphosphate receptor currents revealed by patch clamp of isolated Xenopus oocyte nuclei. J. Biol. Chem. 269:29375-29378.
10. 2+ inhibition. Proc. Natl. Acad. Sci. USA. 95:15821-15825.
11. 3R single-channel gating. J. Gen. Physiol. 122:583-603.
12. 3) receptors in Xenopus oocyte nucleus. J. Gen. Physiol. 109:571-587.
13. Atri, A., J. Amundson, D. Clapham, and J. Sneyd. 1993. A single-pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte. Biophys. J. 65:1727-1739.
14. 2+ concentration. Proc. Natl. Acad. Sci. USA. 89:9895-9899.
15. 3 receptor-dependent calcium signaling. J. Gen. Physiol. 110:529-538.
16. Sneyd, J., and J. F. Dufour. 2002. A dynamic model of the type-2 inositol trisphosphate receptor. Proc. Natl. Acad. Sci. USA. 99:2398-2403.
17. 2+ transients. Cell Calcium. 23:291-302.
18. 3 receptor with a luminal calcium binding site: stochastic simulations and analysis. Cell Calcium. 35:403-413.
19. Sneyd, J., and M. Falcke. 2005. Models of the inositol trisphosphate receptor. Prog. Biophys. Mol. Biol. 89:207-245.
20. Baran, I. 2003. Integrated luminal and cytosolic aspects of the calcium release control. Biophys. J. 84:1470-1485.
21. Hille, B. 2001: Ion Channels of Excitable Membranes, 3rd ed. Sinauer Associates, Sunderland, MA.
22. Adkins, C. E., and C. W. Taylor. 1999. Lateral inhibition of inositol 1,4,5-trisphosphate receptors by cytosolic Ca(2+). Curr. Biol. 9:1115-1118.
23. 2+ release. Physical Review E. 62:2636-2643.
24. Rosenmund, C., Y. Stern-Bach, and C. F. Stevens. 1998. The tetrameric structure of a glutamate receptor channel. Science. 280:1596-1599.
25. Bruno, W. J., J. Yang, and J. E. Pearson. 2005. Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics. Proc. Natl. Acad. Sci. USA. 102:6326-6331.
26. Yang J., W. J. Bruno, W. S. Hlavacek, and J. E. Pearson. 2006. On imposing detailed balance in complex reaction mechanisms. Biophys. J. 91:1136-1141.
27. 2+ release of inositol 1,4,5-trisphosphate receptor clusters. Biophys. J. 83:87-97.
28. Shuai, J. W., and P. Jung. 2003. Optimal ion channel clustering for intracellular calcium signaling. Proc. Natl. Acad. Sci. USA. 100:506-510.
29. Rose, H. J., S. Dargan, J. Shuai, and I. Parker. 2006. "Trigger" events precede calcium puffs in Xenopus oocytes. Biophys. J. 91:4024-4032.
30. Zahradnik, I., S. Gyorke, and A. Zahradnikova. 2005. Calcium activation of ryanodine receptor channels-reconciling RyR gating models with tetrameric channel structure. J. Gen. Physiol. 126:515-527.
31. 3 receptors underlying calcium puffs in Xenopus oocytes. Biophys. J. 91:4033-4044.