Cryo-X-ray tomography of vaccinia virus membranes and inner compartments

Journal of Structural Biology

Volumn 168, Issue 2, 2009, Pages 234-239

  Carrascosa, José L ^a   Chichón, Francisco Javier ^a   Pereiro, Eva ^b   Rodríguez, María Josefa ^a   Fernández, Jose Jesús ^a,c   Esteban, Mariano ^a   Heim, Stefan ^d   Guttmann, Peter ^d   Schneider, Gerd ^d  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^b ALBA SYNCHROTRON LIGHT SOURCE   (Spain)

^c UNIVERSITY OF ALMERÍA   (Spain)

^d HAHN MEITNER INSTITUT   (Germany)

Author keywords

Cryo tomography; Electron microscopy; Membranes; Three dimensional tomographic reconstruction; Vaccinia virus; Virion structure; X ray microscopy

Indexed keywords

ARTICLE; CONTROLLED STUDY; CRYO X RAY TOMOGRAPHY; ELECTRON MICROSCOPY; IMAGE ANALYSIS; IMAGE RECONSTRUCTION; MEMBRANE COMPONENT; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; THREE DIMENSIONAL IMAGING; TOMOGRAPHY; VACCINIA VIRUS; VIRION; VIRUS ENVELOPE; VIRUS MORPHOLOGY; VIRUS PARTICLE; X RAY ANALYSIS;

CRYOELECTRON MICROSCOPY; TOMOGRAPHY, X-RAY; VACCINIA VIRUS;

VACCINIA VIRUS;

EID: 70349563292     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2009.07.009     Document Type: Article

References (39)

1. Born M., and Wolf E. Chapter X: Interference and Diffraction with Partially Coherent Light, Principles of Optics (1980), Pergamon Press, Oxford
2. Cardone G., Grunewald K., and Steven A.C. A resolution criterion for electron tomography based on cross-validation. J. Struct. Biol. 151 (2005) 117-129
3. Condit R.C., Moussatche N., and Traktman P. In a nutshell: structure and assembly of the vaccinia virion. Adv. Virus Res. 66 (2006) 31-124
4. Cyrklaff M., Risco C., Fernandez J.J., Jimenez M.V., Esteban M., Baumeister W., and Carrascosa J.L. Cryo-electron tomography of vaccinia virus. Proc. Natl. Acad. Sci. USA 102 (2005) 2772-2777
5. Cyrklaff M., Linaroudis A., Boicu M., Chlanda P., Baumeister W., Griffiths G., and Krijnse-Locker J. Whole cell cryo-electron tomography reveals distinct disassembly intermediates of vaccinia virus. PLoS ONE 2 (2007) e420
6. Chao W., Harteneck B.D., Liddle J.A., Anderson E.H., and Attwood D.T. Soft X-ray microscopy at a spatial resolution better than 15 nm. Nature 435 (2005) 1210-1213
7. Chen H., Hughes D.D., Chan T.A., Sedat J.W., and Agard D.A. IVE (Image Visualization Environment): a software platform for all three-dimensional microscopy applications. J. Struct. Biol. 116 (1996) 56-60
8. Dallo S., Maa J.S., Rodriguez J.R., Rodriguez D., and Esteban M. Humoral immune response elicited by highly attenuated variants of vaccinia virus and by an attenuated recombinant expressing HIV-1 envelope protein. Virology 173 (1989) 323-329
9. Dubochet J., Adrian M., Richter K., Garces J., and Wittek R. Structure of intracellular mature vaccinia virus observed by cryoelectron microscopy. J. Virol. 68 (1994) 1935-1941
10. Esteban M. Defective vaccinia virus particles in interferon-treated infected cells. Virology 133 (1984) 220-227
11. Frank J. Electron Tomography, Methods for Three-dimensional Visualization of Structures in the Cell. second ed. (2006), Springer, New York
12. Fung J.C., Liu W., de Ruijter W.J., Chen H., Abbey C.K., Sedat J.W., and Agard D.A. Toward fully automated high-resolution electron tomography. J. Struct. Biol. 116 (1996) 181-189
13. Griffiths G., Roos N., Schleich S., and Locker J.K. Structure and assembly of intracellular mature vaccinia virus: thin-section analyses. J. Virol. 75 (2001) 11056-110570
14. Griffiths G., Wepf R., Wendt T., Locker J.K., Cyrklaff M., and Roos N. Structure and assembly of intracellular mature vaccinia virus: isolated-particle analysis. J. Virol. 75 (2001) 11034-11055
15. Grunewald K., and Cyrklaff M. Structure of complex viruses and virus-infected cells by electron cryo tomography. Curr. Opin. Microbiol. 9 (2006) 437-442
16. Gu W., Etkin L.D., Le Gros M.A., and Larabell C.A. X-ray tomography of Schizosaccharomyces pombe. Differentiation 75 (2007) 529-535
17. Guttmann, P., Zheng, X., Feser, M., Heim, S., Yun, W., Schneider, G., 2008. Ellipsoidal capillary as condenser for the BESSY full-field X-ray microscope. In: IOP Ninth International Conference on X-ray Microscopy, Zürich, Switzerland.
18. Hans C., Warren K.C., John W.S., and Agard D.A. In: Raj S.A., et al. (Ed). PRIISM: An Integrated System for Display and Analysis of 3D Microscope Images vol. 1660 (1992), SPIE 784-790
19. Heymann J.B., and Belnap D.M. Bsoft: image processing and molecular modeling for electron microscopy. J. Struct. Biol. 157 (2007) 3-18
20. Kremer J.R., Mastronarde D.N., and McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116 (1996) 71-76
21. Larabell C.A., and Le Gros M.A. X-ray tomography generates 3D reconstructions of the yeast, Saccharomyces cerevisiae, at 60-nm resolution. Mol. Biol. Cell 15 (2004) 957-962
22. Le Gros M.A., McDermott G., and Larabell C.A. X-ray tomography of whole cells. Curr. Opin. Struct. Biol. 15 (2005) 593-600
23. Lucic V., Forster F., and Baumeister W. Structural studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 74 (2005) 833-865
24. Moss B. Poxviridae: the viruses and their replication. In: Knipe D.N., and Howley P.M. (Eds). Fields Virology (2007), Lippincott Williams & Wilkins, a Wolters Klumber Business, Philadelphia 2905-2975
25. Paez E., Dallo S., and Esteban M. Generation of a dominant 8-MDa deletion at the left terminus of vaccinia virus DNA. Proc. Natl. Acad. Sci. USA 82 (1985) 3365-3369
26. Paez E., Dallo S., and Esteban M. Virus attenuation and identification of structural proteins of vaccinia virus that are selectively modified during virus persistence. J. Virol. 61 (1987) 2642-2647
27. Parkinson D.Y., McDermott G., Etkin L.D., Le Gros M.A., and Larabell C.A. Quantitative 3D imaging of eukaryotic cells using soft X-ray tomography. J. Struct. Biol. 162 (2008) 380-386
28. Roberts K.L., and Smith G.L. Vaccinia virus morphogenesis and dissemination. Trends Microbiol. 16 (2008) 472-479
29. Rosenthal P.B., Crowther R.A., and Henderson R. An objective criterion for resolution assessment in single-particle electron microscopy (Appendix). J. Mol. Biol. 333 (2003) 721-745
30. Schneider G. Cryo X-ray microscopy with high spatial resolution in amplitude and phase contrast. Ultramicroscopy 75 (1998) 85-104
31. Schneider, G., Guttmann, P., Heim, S., Rehbein, S., Eichert, D., Niemann, B., 2007. X-ray microscopy at BESSY: from nano-tomography to fs-imaging. Synchrotron Radiation and Instrumentation, pp. 1241-1294, In Choi, J.-Y., and Rah, S., (eds.) Synchrotron Radiation and Instrumentation Proceedings IX International Conference, Vol. 879. AIP Conf. Proc.
32. Schneider G., Anderson E., Vogt S., Knochel C., Weiss D., Legros M., and Larabell C. Computed tomography of cryogenic cells. Surf. Rev. Lett. 9 (2002) 177-183
33. Schneider G., Denbeaux G., Anderson E., Pearson A., Bates W., Vogt S., Knochel C., Meyer M.A., and Zschech E. High resolution X-ray tomography with applications in biology and materials science. J. Phys. IV 104 (2003) 607-613
34. Spence J.C.H. Experimental High-resolution Electron Microscopy. third ed. (2003), Oxford University Press, New York
35. Subramaniam S., Bartesaghi A., Liu J., Bennett A.E., and Sougrat R. Electron tomography of viruses. Curr. Opin. Struct. Biol. 17 (2007) 596-602
36. Thieme J., Schneider G., and Knochel C. X-ray tomography of a microhabitat of bacteria and other soil colloids with sub-100 nm resolution. Micron 34 (2003) 339-344
37. Tokuyasu K.T. A technique for ultracryotomy of cell suspensions and tissues. J. Cell Biol. 57 (1973) 551-565
38. Weiss D., Schneider G., Niemann B., Guttmann P., Rudolph D., and Schmahl G. Computed tomography of cryogenic biological specimens based on X-ray microscopic images. Ultramicroscopy 84 (2000) 185-197
39. Zeng X., Duewer F., Feser M., Huang C., Lyon A., Tkachuk A., and Yun W. Ellipsoidal and parabolic glass capillaries as condensers for X-ray microscopes. Appl. Opt. 47 (2008) 2376-2381