X-ray tomography of whole cells

Current Opinion in Structural Biology

Volumn 15, Issue 5, 2005, Pages 593-600

  Le Gros, Mark A ^a   McDermott, Gerry ^a   Larabell, Carolyn A ^a,b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; CELL FUNCTION; CELL STRUCTURE; FREEZE DRYING; HUMAN; MICROSCOPE; MOLECULAR DYNAMICS; NONHUMAN; OPTICS; PRIORITY JOURNAL; REVIEW; TOMOGRAPHY; WHOLE CELL; YEAST CELL;

ALGORITHMS; BACTERIA; FREEZING; MICROSCOPY; ORGANELLES; TOMOGRAPHY, X-RAY; YEASTS;

EID: 25844505837     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.sbi.2005.08.008     Document Type: Review

References (30)

1. P. Cloetens, J. Baruchel, and G. Boivin Quantification of the degree of mineralization of bone in three dimensions using synchrotron radiation microtomography Med Phys 29 2002 2672 2681
2. S.R. Stock, K.I. Ignatiev, T. Dahl, A. Veis, and F. De Carlo Three-dimensional microarchitecture of the plates (primary, secondary, and carinar process) in the developing tooth of Lytechinus variegatus revealed by synchrotron X-ray absorption microtomography (microCT) J Struct Biol 144 2003 282 300
3. C.A. Larabell, and M.A. Le Gros X-ray tomography generates 3-D reconstructions of the yeast, Saccharomyces cerevisiae, at 60-nm resolution Mol Biol Cell 15 2004 957 962 This paper presents the state of the art in high-resolution X-ray tomography of cryogenic whole-cell specimens. Movies of multiple tomographic data sets are available at ncxt.lbl.gov.
4. G. Schneider, E. Anderson, S. Vogt, C. Knochel, D. Weiss, M. Le Gros, and C. Larabell Computed tomography of cryogenic cells Surf Rev Lett 9 2002 177 183
5. D. Weiss, G. Schneider, S. Vogt, P. Guttmann, B. Niemann, D. Rudolph, and G. Schmahl Tomographic imaging of biological specimens with the cryo transmission X-ray microscope Nucl Instrum Methods Phys Res A 467 2001 1308 1311
6. W. Chao, B. Harteneck, J.A. Liddle, E.H. Anderson, and D. Attwood Sub-15 nm spatial resolution soft X-ray microscopy Nature 435 2005 1210 1213 This paper presents a breakthrough fabrication technique for high-resolution zone plate optics and shows high-resolution data obtained from specially made test patterns.
7. H.N. Chapman, C. Jacobsen, and S. Williams A characterisation of dark-field imaging of colloidal gold labels in a scanning transmission X-ray microscope Ultramicroscopy 62 1996 191 213
8. W. Meyer-Ilse, D. Hamamoto, A. Nair, S.A. Lelievre, G. Denbeaux, L. Johnson, A.L. Pearson, D. Yager, M.A. Le Gros, and C.A. Larabell High resolution protein localization using soft X-ray microscopy J Microsc 201 2001 395 403
9. D. Attwood Soft X-rays and Extreme Ultraviolet Radiation: Principles and Applications 1999 Cambridge University Press Cambridge
10. W. Meyer-Ilse, H. Medecki, L. Jochum, E. Anderson, D. Attwood, C. Magowan, R. Balhorn, M. Moronne, D. Rudolph, and G. Schmahl New high-resolution zone-plate microscope at beamline 6.1 of the ALS Synchrotron Radiation News 8 1995 29 33
11. G. Denbeaux, P. Fischer, G. Schneider, J.A. Liddle, E. Anderson, A. Pearson, W. Chao, C. Larabell, M. Le Gros, and D. Attwood Full-field soft X-ray microscopy at the Advanced Light Source Synchrotron Radiation News 16 2003 16 21
12. G. Schmahl, D. Rudolph, B. Niemann, and O. Christ G. Schmahl D. Rudolph The Goettingen X-ray Microscope and X-ray Microscopy Experiments at the BESSY Storage Ring vol 43 1984 Springer Series in Optical Sciences
13. P. Guttmann, B. Niemann, J. Thieme, D. Hambach, G. Schneider, U. Wiesemann, D. Rudolph, and G. Schmahl Instrumentation advances with the new X-ray microscope at BESSY II Nucl Instrum Methods Phys Res A 857 2001 467 468
14. H. Rarback, C. Buckley, K. Goncz, H. Ade, E. Anderson, D. Attwood, P. Batson, S. Hellman, C. Jacobsen, and D. Kern The scanning transmission microscope at the NSLS Nucl Instrum Methods Phys Res A 291 1990 54
15. U. Wiesemann, J. Thieme, R. Fruke, P. Guttmann, B. Niemann, D. Rudolph, and G. Schmahl Construction of a scanning transmission X-ray microscope at the undulator U-41 at BESSY II Nucl Instrum Methods Phys Res A 861 2001 467 468
16. S. Vogt, H.N. Chapman, C. Jacobsen, and R. Medenwaldt Dark field X-ray microscopy: the effects of condenser/detector aperture Ultramicroscopy 87 2001 25 44
17. H. Ade, A.L.D. Kilcoyne, T. Tyliszczak, P. Hitchcock, E. Anderson, B. Harteneck, E.G. Rightor, G.E. Mitchell, A.P. Hitchcock, and T. Warwick Scanning transmission X-ray microscopy at a bending magnet beamline at the Advanced Light Source Journal de Physique IV 104 2003 3 8
18. Y. Wang, C. Jacobsen, J. Maser, and A. Osanna Soft X-ray microscopy with a cryo scanning transmission X-ray microscope: II. Tomography J Microsc 197 2000 80 93
19. R.M. Glaeser Low temperature electron microscopy - radiation damage in crystalline biological materials J Microsc 12 1971 133
20. D. Weiss, G. Schneider, B. Niemann, P. Guttmann, D. Rudolph, and G. Schmahl Computed tomography of cryogenic biological specimens based on X-ray microscopic images Ultramicroscopy 84 2000 185 197
21. C. Larabell, and M. Le Gros Whole cell cryo X-ray tomography and protein localization at 50 micron resolution Biophys J 86 2004 185A
22. W. Baumeister, R. Grimm, and J. Walz Electron tomography of molecules and cells Trends Cell Biol 9 1999 81 85
23. J. Frank, M. Radermacher, P. Penczek, J. Zhu, Y.H. Li, M. Ladjadj, and A. Leith Spider and web - processing and visualization of images in 3D electron microscopy and related fields J Struct Biol 116 1996 190 199
24. J.R. Kremer, D.N. Mastronarde, and J.R. McIntosh Computer visualization of three-dimensional image data using IMOD J Struct Biol 116 1996 71 76
25. J. Frank Electron Tomography 1992 Plenum Press New York
26. J. Miao, P. Charalambous, J. Kirz, and D. Sayre Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens Nature 400 1999 342
27. J. Miao, T. Ohsuna, O. Terasaki, K.O. Hodgson, and M.A. O'Keefe Atomic resolution three-dimensional electron diffraction microscopy Phys Rev Lett 89 2002 155502
28. J. Miao, T. Ishikawa, B. Johnson, E.H. Anderson, B. Lai, and K.O. Hodgson High resolution 3D X-ray diffraction microscopy Phys Rev Lett 89 2002 088303
29. J. Miao, K.O. Hodgson, T. Ishikawa, C.A. Larabell, M.A. Le Gros, and Y. Nishino Imaging whole Escherichia coli bacteria by using single-particle X-ray diffraction Proc Natl Acad Sci USA 100 2003 110 112
30. S. Marchesini, H. He, H.N. Chapman, S.P. Hau-Riege, A. Noy, M.R. Howells, U. Weierstall, and J.C.H. Spence X-ray image reconstruction from a diffraction pattern alone Phys Rev B 68 2003 140101 This paper introduces a new method for phasing a DIM pattern that does not require a low-resolution direct image of the object.