Electron tomography of viruses

Current Opinion in Structural Biology

Volumn 17, Issue 5, 2007, Pages 596-602

  Subramaniam, Sriram ^a   Bartesaghi, Alberto ^a   Liu, Jun ^a   Bennett, Adam E ^a   Sougrat, Rachid ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN;

CRYOELECTRON MICROSCOPY; CRYSTALLIZATION; ELECTRON BEAM TOMOGRAPHY; ELECTRON MICROSCOPY; HERPES VIRUS; HUMAN IMMUNODEFICIENCY VIRUS; IMAGE ANALYSIS; KAPOSI SARCOMA; PRIORITY JOURNAL; REVIEW; VIRUS ENVELOPE; VIRUS MORPHOLOGY; VIRUS REPLICATION; X RAY CRYSTALLOGRAPHY;

ANIMALS; ANTIBODIES, VIRAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MICROSCOPY, ELECTRON; MODELS, MOLECULAR; VIRUSES;

EID: 35548941747     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.sbi.2007.09.009     Document Type: Review

References (36)

1. Dubochet J., Adrian M., Chang J.J., Homo J.C., Lepault J., McDowall A.W., and Schultz P. Cryo-electron microscopy of vitrified specimens. Q Rev Biophys 21 (1988) 129-228
2. Baker T.S., Olson N.H., and Fuller S.D. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol Mol Biol Rev 63 (1999) 862-922 table of contents
3. Rossmann M.G., Morais M.C., Leiman P.G., and Zhang W. Combining X-ray crystallography and electron microscopy. Structure 13 (2005) 355-362
4. Cyrklaff M., Risco C., Fernandez J.J., Jimenez M.V., Esteban M., Baumeister W., and Carrascosa J.L. Cryo-electron tomography of vaccinia virus. Proc Natl Acad Sci U S A 102 (2005) 2772-2777
5. Forster F., Medalia O., Zauberman N., Baumeister W., and Fass D. Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography. Proc Natl Acad Sci U S A 102 (2005) 4729-4734
6. Grunewald K., Desai P., Winkler D.C., Heymann J.B., Belnap D.M., Baumeister W., and Steven A.C. Three-dimensional structure of herpes simplex virus from cryo-electron tomography. Science 302 (2003) 1396-1398
7. Sougrat R., Bartesaghi A., Lifson J.D., Bennett A.E., Bess J.W., Zabransky D.J., and Subramaniam S. Electron tomography of the contact between T cells and SIV/HIV-1: implications for viral entry. PLoS Pathog 3 (2007) e63. Report of electron tomographic analysis of early events in the entry of HIV and SIV into T-cells leading to the discovery of the viral 'entry claw', a distinctive structure formed at the contact zone between virus and cell. Understanding the structure of the entry claw may facilitate the identification of improved drugs for the inhibition of HIV-1 entry.
8. Subramaniam S. The SIV surface spike imaged by electron tomography: one leg or three?. PLoS Pathog 2 (2006) e91
9. Zanetti G., Briggs J.A., Grunewald K., Sattentau Q.J., and Fuller S.D. Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ. PLoS Pathog 2 (2006) e83
10. Zhu P., Liu J., Bess Jr. J., Chertova E., Lifson J.D., Grise H., Ofek G.A., Taylor K.A., and Roux K.H. Distribution and three-dimensional structure of AIDS virus envelope spikes. Nature 441 (2006) 847-852
11. Bottcher B., Wynne S.A., and Crowther R.A. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature 386 (1997) 88-91
12. Conway J.F., Cheng N., Zlotnick A., Wingfield P.T., Stahl S.J., and Steven A.C. Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy. Nature 386 (1997) 91-94
13. Zhou Z.H., Dougherty M., Jakana J., He J., Rixon F.J., and Chiu W. Seeing the herpesvirus capsid at 8.5 Å. Science 288 (2000) 877-880
14. Heymann J.B., Cheng N., Newcomb W.W., Trus B.L., Brown J.C., and Steven A.C. Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy. Nat Struct Biol 10 (2003) 334-341
15. Roseman A.M., Berriman J.A., Wynne S.A., Butler P.J., and Crowther R.A. A structural model for maturation of the hepatitis B virus core. Proc Natl Acad Sci U S A 102 (2005) 15821-15826
16. McIntosh R., Nicastro D., and Mastronarde D. New views of cells in 3D: an introduction to electron tomography. Trends Cell Biol 15 (2005) 43-51
17. Bartesaghi, A., Sprechmann, P., Randall, G., Sapiro, G., Subramaniam, S., April 2007. Classification and averaging of electron tomography volumes. In: 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Washington DC, USA, pp. 244-247.
18. Forster F., Pruggnaller S., Seybert A., and Frangakis A.S. Classification of cryo-electron sub-tomograms using constrained correlation. J Struct Biol (2007)
19. Winkler H. 3D reconstruction and processing of volumetric data in cryo-electron tomography. J Struct Biol 157 (2007) 126-137
20. Harris A., Cardone G., Winkler D.C., Heymann J.B., Brecher M., White J.M., and Steven A.C. Influenza virus pleiomorphy characterized by cryoelectron tomography. Proc Natl Acad Sci U S A 103 (2006) 19123-19127
21. Briggs J.A., Grunewald K., Glass B., Forster F., Krausslich H.G., and Fuller S.D. The mechanism of HIV-1 core assembly: insights from three-dimensional reconstructions of authentic virions. Structure 14 (2006) 15-20
22. Wright E.R., Schooler J.B., Ding H.J., Kieffer C., Fillmore C., Sundquist W.I., and Jensen G.J. Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells. EMBO J 26 (2007) 2218-2226
23. Cardone G., Winkler D.C., Trus B.L., Cheng N., Heuser J.E., Newcomb W.W., Brown J.C., and Steven A.C. Visualization of the herpes simplex virus portal in situ by cryo-electron tomography. Virology 361 (2007) 426-434. One of three papers concurrently published papers on structural analysis of the entry portal of herpes simplex virus type 1 using cryo electron tomography. Each of these studies confirms that the structure of the portal is different when compared to the remaining eleven vertices of the viral capsid; however they disagree on the precise architecture of the portal itself.
24. •].
25. •].
26. Leiman P.G., Kanamaru S., Mesyanzhinov V.V., Arisaka F., and Rossmann M.G. Structure and morphogenesis of bacteriophage T4. Cell Mol Life Sci 60 (2003) 2356-2370
27. Orenstein J.M. Replication of HIV-1 in vivo and in vitro. Ultrastruct Pathol 31 (2007) 151-167
28. Ojeda S., Domi A., and Moss B. Vaccinia virus G9 protein is an essential component of the poxvirus entry-fusion complex. J Virol 80 (2006) 9822-9830
29. Roy A.M., Parker J.S., Parrish C.R., and Whittaker G.R. Early stages of influenza virus entry into Mv-1 lung cells: involvement of dynamin. Virology 267 (2000) 17-28
30. Brandenburg B., Lee L.Y., Lakadamyali M., Rust M.J., Zhuang X., and Hogle J.M. Imaging Poliovirus Entry in Live Cells. PLoS Biol 5 (2007) e183
31. Conway J.F., Watts N.R., Belnap D.M., Cheng N., Stahl S.J., Wingfield P.T., and Steven A.C. Characterization of a conformational epitope on hepatitis B virus core antigen and quasi equivalent variations in antibody binding. J Virol 77 (2003) 6466-6473
32. Geldmacher A., Skrastina D., Petrovskis I., Borisova G., Berriman J.A., Roseman A.M., Crowther R.A., Fischer J., Musema S., Gelderblom H.R., et al. An amino-terminal segment of hantavirus nucleocapsid protein presented on hepatitis B virus core particles induces a strong and highly cross-reactive antibody response in mice. Virology 323 (2004) 108-119
33. Bennett A.E., Liu J., Van Ryk D., Bliss D., Arthos J., Henderson R.M., and Subramaniam S. Cryo electron tomographic analysis of an HIV neutralizing protein and its complex with native viral gp120. J Biol Chem 282 (2007) 27754-27759
34. Cyrklaff M., Linaroudis A., Boicu M., Chlanda P., Baumeister W., Griffiths G., and Krijnse-Locker J. Whole cell cryo-electron tomography reveals distinct disassembly intermediates of vaccinia virus. PLoS ONE 2 (2007) e420
35. Kopek B.G., Perkins G., Miller D.J., Ellisman M.H., and Ahlquist P. Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle. PLoS Biol 5 (2007) e220. First electron tomographic study of a cell infected with a positive-strand RNA virus. The results provide new information on the sites of nascent RNA accumulation and the organization of the RNA replication complex in cells infected with flock house virus.
36. Baines J.D., Hsieh C.E., Wills E., Mannella C., and Marko M. Electron tomography of nascent herpes simplex virus virions. J Virol 81 (2007) 2726-2735