Shewanella marina sp. nov., isolated from seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 8, 2009, Pages 1888-1894

  Park, Seong Chan ^a   Baik, Keun Sik ^a   Kim, Mi Sun ^a   Kim, Duwoon ^b   Seong, Chi Nam ^a  

^a Sunchon National University   (South Korea)

^b Chonnam National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMIKACIN; AMPICILLIN; CHLORAMPHENICOL; ERYTHROMYCIN; GENTAMICIN; KANAMYCIN; NALIDIXIC ACID; PENICILLIN G; POLYMYXIN B; RNA 16S; SEA WATER; STREPTOMYCIN; TETRACYCLINE; VANCOMYCIN; BACTERIAL DNA; CATALASE; FATTY ACID; OXIDOREDUCTASE; PIGMENT; RIBOSOME DNA;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA BASE COMPOSITION; LIPID COMPOSITION; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SHEWANELLA; SHEWANELLA ALGAE; SHEWANELLA HALIOTIS; SHEWANELLA MARINA; SOUTH KOREA; STRAIN DIFFERENCE; ANAEROBIC GROWTH; BACTERIUM IDENTIFICATION; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; KOREA; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY;

BACTERIA (MICROORGANISMS); HALIOTIS; NEGIBACTERIA; SHEWANELLA; SHEWANELLA ALGAE;

ANAEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CATALASE; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SHEWANELLA;

EID: 70349335841     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005470-0     Document Type: Article

References (70)

1. Aguirre, A. A., Balazs, G. H., Zimmerman, B. & Spraker, T. R. (1994). Evaluation of Hawaiian green turtles (Cheledonia mydas) for potential pathogens associated with fibropapillomas. J Wildl Dis 30, 8-15.
2. Anzai, Y., Kim, H., Park, J. Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
3. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
4. VP (Effective publication: MacDonell and Colwell 1985, 180). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part B, pp. 480-491. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
5. Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Rea, S. M., Nichols, P. D. & McMeekin, T. A. (1997). Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5ω3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 47, 1040-1047.
6. Bozal, N., Montes, M. J., Tudela, E., Jiménez, F. & Guinea, J. (2002). Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int J Syst Evol Microbiol 52, 195-205.
7. Brettar, I., Christen, R. & Höfle, M. G. (2002). Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxicanoxic interface of the Gotland Deep in the central Baltic Sea. Int J Syst Evol Microbiol 52, 2211-2217.
8. Brink, A. J., van Straten, A. & van Rensburg, A. J. (1995). Shewanella (Pseudomonas) putrefaciens bacteremia. Clin Infect Dis 20, 1327-1332.
9. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
10. Chun, J., Bae, K. S., Moon, E. Y., Jung, S.-O., Lee, H. K. & Kim, S.-J. (2000). Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
11. CLSI (2003). Performance standards for antimicrobial disk susceptibility tests, 8th edn. Approved Standard M2-A8. Wayne, PA: Clinical Laboratory Standards Institute.
12. Debois, J., Degreef, H., Vandepitte, J. & Spaepen, J. (1975). Pseudomonas putrefaciens as a cause of infection in humans. J Clin Pathol 28, 993-996.
13. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
14. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
15. Gao, H., Obraztova, A., Stewart, N., Popa, R., Fredrickson, J. K., Tiedje, J. M., Nealson, K. H. & Zhou, J. (2006). Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. Int J Syst Evol Microbiol 56, 1911-1916.
16. Gauthier, G., Gauthier, M. & Christen, R. (1995). Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45, 755-761.
17. Gram, L. & Huss, H. H. (1996). Microbiological spoilage of fish and fish products. Int J Food Microbiol 33, 121-137.
18. Gram, L., Trolle, G. & Huss, H. H. (1987). Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures. Int J Food Microbiol 4, 65-72.
19. Hirota, K., Nodasaka, Y., Orikasa, Y., Okuyama, H. & Yumoto, I. (2005). Shewanella pneumatophori sp. nov., an eicosapentaenoic acid-producing marine bacterium isolated from the intestines of Pacific mackerel (Pneumatophorus japonicus). Int J Syst Evol Microbiol 55, 2355-2359.
20. Holmes, B., Lapage, S. P. & Malnick, H. (1975). Strains of Pseudomonas putrefaciens from clinical material. J Clin Pathol 28, 149-155.
21. Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2001). Shewanella japonica sp. nov. Int J Syst Evol Microbiol 51, 1027-1033.
22. Ivanova, E. P., Nedashkovskaya, O. I., Zhukova, N. V., Nicolau, D. V., Christen, R. & Mikhailov, V. V. (2003a). Shewanella waksmanii sp. nov., isolated from a sipuncula (Phascolosoma japonicum). Int J Syst Evol Microbiol 53, 1471-1477.
23. Ivanova, E. P., Sawabe, T., Hayashi, K., Gorshkova, N. M., Zhukova, N. V., Nedashkovskaya, O. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2003b). Shewanella fidelis sp. nov., isolated from sediments and sea water. Int J Syst Evol Microbiol 53, 577-582.
24. Ivanova, E. P., Gorshkova, N. M., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Sergeev, A. F., Mikhailov, V. V. & Nicolau, D. V. (2004a). Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int J Syst Evol Microbiol 54, 1083-1087.
25. Ivanova, E. P., Nedashkovskaya, O. I., Sawabe, T., Zhukova, N. V., Frolova, G. M., Nicolau, D. V., Mikhailov, V. V. & Bowman, J. P. (2004b). Shewanella affinis sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 54, 1089-1093.
26. Jørgensen, B. R. & Huss, H. H. (1989). Growth and activity of Shewanella putrefaciens isolated from spoiling fish. Int J Food Microbiol 9, 51-62.
27. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
28. Khashe, S. & Janda, J. M. (1998). Biochemical and pathogenic properties of Shewanella alga and Shewanella putrefaciens. J Clin Microbiol 36, 783-787.
29. Kim, D., Baik, K. S., Kim, M. S., Jung, B.-M., Shin, T.-S., Chung, G.-H., Rhee, M. S. & Seong, C. N. (2007). Shewanella haliotis sp. nov., isolated from the gut microflora of abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 57, 2926-2931.
30. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
31. Lee, O. O., Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Dobretsov, S., Wu, M. C. S., Wong, P.-K., Weinbauer, M. & Qian, P.-Y. (2006). Shewanella irciniae sp. nov., a novel member of the family Shewanellaceae, isolated from the marine sponge Ircinia dendroides in the Bay of Villefranche, Mediterranean Sea. Int J Syst Evol Microbiol 56, 2871-2877.
32. Leonardo, M. R., Moser, D. P., Barbieri, E., Brantner, C. A., MacGregor, B. J., Paster, B. J., Stackebrandt, E. & Nealson, K. H. (1999). Shewanella pealeana sp. nov., a member of the microbial community associated with the accessory nidamental gland of the squid Loligo pealei. Int J Syst Bacteriol 49, 1341-1351.
33. Levin, R. E. (1972). Correlation of DNA base composition and metabolism of Pseudomonas putrefaciens isolates from food, human clinical specimens, and other sources. Antonie van Leeuwenhoek 38, 121-127.
34. MacDonell, M. T. & Colwell, R. R. (1985). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6, 171-182.
35. Makemson, J. C., Fulayfil, N. R., Landry, W., Van Ert, L. M., Wimpee, C. F., Widder, E. A. & Case, J. F. (1997). Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int J Syst Bacteriol 47, 1034-1039.
36. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
37. Miyazaki, M., Nogi, Y., Usami, R. & Horikoshi, K. (2006). Shewanella surugensis sp. nov., Shewanella kaireitica sp. nov. and Shewanella abyssi sp. nov., isolated from deep-sea sediments of Suruga Bay, Japan. Int J Syst Evol Microbiol 56, 1607-1613.
38. Myers, C. R. & Nealson, K. H. (1988). Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240, 1319-1321.
39. Nealson, K. H., Myers, C. R. & Wimpee, B. (1991). Isolation and identification of manganese reducing bacteria, and estimates of microbial manganese reducing potential in the Black Sea. Deep Sea Res 38, S907-S920.
40. Nogi, Y., Kato, C. & Horikoshi, K. (1998). Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch Microbiol 170, 331-338.
41. Nozue, H., Hayashi, T., Hashimoto, Y., Ezaki, T., Hamasaki, K., Ohwada, K. & Terawaki, Y. (1992). Isolation and characterization of Shewanella alga from clinical specimens and emendation of the description of S. algae Simidu et al., 1990, 335. Int J Syst Bacteriol 42, 628-634.
42. Petrovskis, E. A., Vogel, T. M. & Adriaens, P. (1994). Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. FEMS Microbiol Lett 121, 357-363.
43. Russell, N. J. & Nichols, D. S. (1999). Polyunsaturated fatty acids in marine bacteria - a dogma rewritten. Microbiology 145, 767-779.
44. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
45. Satomi, M., Oikawa, H. & Yano, Y. (2003). Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines. Int J Syst Evol Microbiol 53, 491-499.
46. Satomi, M., Vogel, B. F., Gram, L. & Venkateswaran, K. (2006). Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea. Int J Syst Evol Microbiol 56, 243-249.
47. Satomi, M., Vogel, B. F., Venkateswaran, K. & Gram, L. (2007). Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana. Int J Syst Evol Microbiol 57, 347-352.
48. Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 35, 925-931.
49. Simidu, U., Kita-Tsukamoto, K., Yasumoto, T. & Yotsu, M. (1990). Taxonomy of four marine bacterial strains that produce tetrodotoxin. Int J Syst Bacteriol 40, 331-336.
50. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
51. Skerratt, J. H., Bowman, J. P. & Nichols, P. D. (2002). Shewanella olleyana sp. nov., a marine species isolated from a temperate estuary which produces high levels of polyunsaturated fatty acids. Int J Syst Evol Microbiol 52, 2101-2106.
52. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
53. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
54. Stenström, I. M. & Molin, G. (1990). Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens. J Appl Bacteriol 68, 601-618.
55. Swofford, D. L. (1998). PAUP*: Phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
56. Toffin, L., Bidault, A., Pignet, P., Tindall, B. J., Slobodkin, A., Kato, C. & Prieur, D. (2004). Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough. Int J Syst Evol Microbiol 54, 1943-1949.
57. Venkateswaran, K., Dollhopf, M. E., Aller, R., Stackebrandt, E. & Nealson, K. H. (1998). Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds. Int J Syst Bacteriol 48, 965-972.
58. Venkateswaran, K., Moser, D. P., Dollhopf, M. E., Lies, D. P., Saffarini, D. A., MacGregor, B. J., Ringelberg, D. B., White, D. C., Nishijima, M. & other authors (1999). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49, 705-724.
59. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
60. Xiao, X., Wang, P., Zeng, X., Bartlett, D. H. & Wang, F. (2007). Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. Int J Syst Evol Microbiol 57, 60-65.
61. Xu, M., Guo, J., Cen, Y., Zhong, X., Cao, W. & Sun, G. (2005). Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55, 363-368.
62. Yamaguchi, S. & Yokoe, M. (2000). A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl Environ Microbiol 66, 3337-3343.
63. Yang, S.-H., Kwon, K. K., Lee, H.-S. & Kim, S.-J. (2006). Shewanella spongiae sp. nov., isolated from a marine sponge. Int J Syst Evol Microbiol 56, 2879-2882.
64. Yang, S.-H., Lee, J.-H., Ryu, J.-S., Kato, C. & Kim, S.-J. (2007). Shewanella donghaensis sp. nov., a psychrophilic, piezosensitive bacterium producing high levels of polyunsaturated fatty acid, isolated from deep-sea sediments. Int J Syst Evol Microbiol 57, 208-212.
65. Yoon, J. H., Kang, K. H., Oh, T. K. & Park, Y. H. (2004a). Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. Int J Syst Evol Microbiol 54, 487-491.
66. Yoon, J. H., Yeo, S. H., Kim, I. G. & Oh, T. K. (2004b). Shewanella marisflavi sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 2347-2352.
67. +-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment. Int J Syst Evol Microbiol 55, 1511-1520.
68. Zhao, J.-S., Manno, D., Leggiadro, C., O'Neil, D. & Hawari, J. (2006). Shewanella halifaxensis sp. nov., a novel obligately respiratory and denitrifying psychrophile. Int J Syst Evol Microbiol 56, 205-212.
69. Zhao, J.-S., Manno, D., Thiboutot, S., Ampleman, G. & Hawari, J. (2007). Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria. Int J Syst Evol Microbiol 57, 2155-2162.
70. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.