Shewanella haliotis sp. nov., isolated from the gut microflora of abalone, Haliotis discus hannai

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 12, 2007, Pages 2926-2931

  Kim, Duwoon ^a   Baik, Keun Sik ^b   Kim, Mi Sun ^b   Jung, Bok Mi ^a   Shin, Tai Sun ^a   Chung, Gyu Hwa ^a   Rhee, Moon Soo ^c   Seong, Chi Nam ^b  

^a Chonnam National University   (South Korea)

^b Sunchon National University   (South Korea)

^c Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ABALONE; ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; CELL LINEAGE; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; GENETIC ALGORITHM; GRAM NEGATIVE BACTERIUM; INTESTINE FLORA; KOREA; MORPHOLOGICAL TRAIT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SHEWANELLA; SHEWANELLA HALIOTIS; TAXONOMY;

AEROBIOSIS; ANAEROBIOSIS; ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GASTROINTESTINAL TRACT; GASTROPODA; GENES, RRNA; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDOREDUCTASES; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SHEWANELLA;

BACTERIA (MICROORGANISMS); HALIOTIDAE; HALIOTIS; HALIOTIS DISCUS HANNAI; NEGIBACTERIA; SHEWANELLA; SHEWANELLA ALGAE;

EID: 37449006008     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65257-0     Document Type: Article

References (53)

1. Aguirre, A. A., Balazas, G. H., Zimmerman, B. & Spraker, T. R. (1994). Evaluation of Hawaiian green turtles (Cheledonia mydas) for potential pathogens associated with fibropapillomas. J Wild Dis 30, 8-15.
2. Anzai, Y., Kim, H., Park, J. Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
3. VP (Effective publication: MacDonell and Colwell 1985, 180). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part B, pp. 480-491. Edited by D. J. Brenner, N. R. Crieg, J. T. Staley & G. M. Garrity. New York: Springer.
4. Bozal, N., Montes, M. J., Tudela, E., Jiménez, F. & Guinea, J. (2002). Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int J Syst Evol Microbiol 52, 195-205.
5. Brink, A. J., van Straten, A. & van Rensburg, A. J. (1995). Shewanella (Pseudomonas) putrefaciens bacteremia. Clin Infect Dis 20, 1327-1332.
6. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
7. Chun, J., Bae, K. S., Moon, E. Y., Jung, S. O., Lee, H. K. & Kim, S. J. (2000). Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
8. Debois, J., Degreef, H., Vandepitte, J. & Spaepen, J. (1975). Pseudomonas putrefaciens as a cause of infection in humans. J Clin Pathol 28, 993-996.
9. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
10. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
11. Gao, H., Obraztova, A., Stewart N., Popa, R., Fredrickson, J. K., Tiedje, J. M., Nealson, K. H. & Zhou, J. (2006). Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. Int J Syst Evol Microbiol 56, 1911-1916.
12. Gauthier, G., Gauthier, M. & Christen, R. (1995). Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45, 755-761.
13. Gram, L. & Huss, H. H. (1996). Microbiological spoilage of fish and fish products. Int J Food Microbiol 33, 121-137.
14. Gram, L., Trolle, G. & Huss, H. H. (1987). Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures. Int J Food Microbiol 4, 65-72.
15. Holmes, B., Lapage, S. P. & Malnick, H. (1975). Strains of Pseudomonas putrefaciens from clinical material. J Clin Pathol 28, 149-155.
16. Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2001). Shewanella japonica sp. nov. Int J Syst Evol Microbiol 51, 1027-1033.
17. Ivanova, E. P., Gorshkova, N. M., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Sergeev, A. F., Mikhailov, V. V. & Nicolau, D. V. (2004a). Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int J Syst Evol Microbiol 54, 1083-1087.
18. Ivanova, E. P., Nedashkovskaya, O. I., Sawabe, T., Zhukova, N. V., Frolova, G. M., Nicolau, D. V., Mikhailov, V. V. & Bowman, J. P. (2004b). Shewanella affinis sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 54, 1089-1093.
19. Jorgensen, B. R. & Huß, H. H. (1989). Growth and activity of Shewanella putrefaciens isolated from spoiling fish. Int J Food Microbiol 9, 51-62.
20. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
21. Khashe, S. & Janda, J. M. (1998). Biochemical and pathogenic properties of Shewanella alga and Shewanella putrefaciens. J Clin Microbiol 36, 783-787.
22. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
23. Lee, O. O., Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Dobretsov, S., Wu, M. C. S., Wong, P.-K., Weinbauer, M. & Qian, P.-Y. (2006). Shewanella irciniae sp. nov., a novel member of the family Shewanellaceae, isolated from the marine sponge Ircinia dendroides in the Bay of Villefranche, Mediterranean Sea. Int J Syst Evol Microbiol 56, 2871-2877.
24. Levin, R. E. (1972). Correlation of DNA base composition and metabolism of Pseudomonas putrefaciens isolates from food, human clinical specimens, and other sources. Antonie van Leeuwenhoek 38, 121-127.
25. MacDonell, M. T. & Colwell, R. R. (1985). Phylogeny of the Vibrionaceae and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6, 171-182.
26. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
27. Miyazaki, M., Nogi, Y., Usami, R. & Horikoshi, K. (2006). Shewanella surugensis sp. nov., Shewanella kaireitica sp. nov. and Shewanella abyssi sp. nov., isolated from deep-sea sediments of Suruga Bay, Japan. Int J Syst Evol Microbiol 56, 1607-1613.
28. Myers, C. R. & Nealson, K. H. (1988). Manganese reduction bacteria and growth with manganese oxide as the sole electron acceptor. Science 240, 1319-1321.
29. Nealson, K. H., Myers, C. R. & Wimpee, B. (1991). Isolation and identification of manganese reducing bacteria, and estimates of microbial manganese reducing potential in the Black Sea. Deep Sea Res 38, S907-S920.
30. Nogi, Y., Kato, C. & Horikoshi, K. (1998). Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch Microbiol 170, 331-338.
31. Nozue, H., Hayashi, T., Hashimoto, Y., Ezaki, T., Hamasaki, K., Ohwada, K. & Terawaki, Y. (1992). Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al., 1990, 335. Int J Syst Evol Microbiol 42, 628-634.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Satomi, M., Oikawa, H. & Yano, Y. (2003). Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines. Int J Syst Evol Microbiol 53, 491-499.
34. Satomi, M., Vogel, B. F., Gram, L. & Venkateswaran, K. (2006). Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea. Int J Syst Evol Microbiol 56, 243-249.
35. Satomi, M., Vogel, B. F., Venkateswaran, K. & Gram, L. (2007). Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana. Int J Syst Evol Microbiol 57, 347-352.
36. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotoftxans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
37. Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 35, 925-931.
38. Simidu, U., Kita-Tsukamoto, K., Yamasato, T. & Yotsu, M. (1990). Taxonomy of four marine bacterial strains that produce tetrodotoxin. Int J Syst Bacteriol 40, 331-336.
39. Skerratt, J. H., Bowman, J. P. & Nichols, P. D. (2002). Shewanella olleyana sp. nov., a marine species isolated from a temperate estuary which produces high levels of polyunsaturated fatty acids. Int J Syst Evol Microbiol 52, 2101-2106.
40. Stenstrom, I. M. & Molin, G. (1990). Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens. J Appl Bacteriol 68, 601-618.
41. Swofford, D. L. (1998). PAUP: phylogenetic analysis using parsimony, version 4. Sunderland, MA: Sinauer Associates.
42. Toffin, L., Bidault, A., Pignet, P., Tindall, B. J., Slobodkin, A., Kato, C. & Prieur, D. (2004). Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough. Int J Syst Evol Microbiol 54, 1943-1949.
43. Venkateswaran, K., Dollhopf, M. E., Aller, R., Stackebrandt, E. & Nealson, K H. (1998). Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds. Int J Syst Bacteriol 48, 965-972.
44. Venkateswaran, K., Moser, D. P., Dollhopf, M. E., Lies, D. P., Saffarini, D. A., MacGregor, B. J., Ringelberg, D. B., White, D. C., Nishijima, M. & other authors (1999). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49, 705-724.
45. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
46. Xiao, X., Wang, P., Zeng, X., Bartlett, D. H. & Wang, F. (2007). Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. Int J Syst Evol Microbiol 57, 60-65.
47. Xu, M., Guo, J., Can, Y., Zhong, X., Cao, W. & Sun, G. (2005). Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55, 363-368.
48. Yang, S.-H., Kwon, K. K, Lee, H.-S. & Kim, SA. (2006). Shewanella spongiae sp. nov., isolated from a marine sponge. Int J Syst Evol Microbiol 56, 2879-2882.
49. Yang, S.-H., Lee, J.-H., Ryu, J.-S., Kato, C. & Kim, S.-J. (2007). Shewanella donghaensis sp. nov., a psychrophilic, piezosensitive bacterium producing high levels of polyunsaturated fatty acid, isolated from deep-sea sediments. Int J Syst Evol Microbiol 57, 208-212.
50. Yoon, J. H., Kang, K. H., Oh, T. K. & Park, Y. H. (2004a). Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. Int J Syst Evol Microbiol 54, 487-491.
51. Yoon, J. H., Yeo, S. H., Kim, I. G. & Oh, T. K. (2004b). Shewanella marisflavi sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 2347-2352.
52. +-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment. Int J Syst Evol Microbiol 55, 1511-1520.
53. Zhao, J.-S., Manno, D., Leggiadro, C., O'Neil, D. & Hawari, J. (2006). Shewanella halifaxensis sp. nov., a novel obligately respiratory and denitrifying psychrophile. Int J Syst Evol Microbiol 56, 205-212.