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Volumn 56, Issue 1, 2006, Pages 243-249

Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA TOPOISOMERASE (ATP HYDROLYSING) B; GUANINE; RNA 16S;

EID: 31344456121     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63931-0     Document Type: Article
Times cited : (55)

References (31)
  • 2
    • 0030822053 scopus 로고    scopus 로고
    • Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5ω3) and grow anaerobically by dissimilatory Fe(III) reduction
    • Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Rea, S. M., Nichols, P. D. & McMeekin, T. A. (1997). Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5ω3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 47, 1040-1047.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1040-1047
    • Bowman, J.P.1    McCammon, S.A.2    Nichols, D.S.3    Skerratt, J.H.4    Rea, S.M.5    Nichols, P.D.6    McMeekin, T.A.7
  • 3
    • 0036153920 scopus 로고    scopus 로고
    • Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas
    • Bozal, N., Montes, M. J., Tudela, E., Jimenez, F. & Guinea, J. (2002). Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int J Syst Evol Microbiol 52, 195-205.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 195-205
    • Bozal, N.1    Montes, M.J.2    Tudela, E.3    Jimenez, F.4    Guinea, J.5
  • 4
    • 0036867531 scopus 로고    scopus 로고
    • Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxicanoxic interface of the Gotland Deep in the central Baltic Sea
    • Brettar, I., Christen, R. & Hofle, M. G. (2002). Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxicanoxic interface of the Gotland Deep in the central Baltic Sea. Int J Syst Evol Microbiol 52, 2211-2217.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 2211-2217
    • Brettar, I.1    Christen, R.2    Hofle, M.G.3
  • 5
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 6
    • 0342941173 scopus 로고    scopus 로고
    • Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis
    • Fonnesbech Vogel, B., Jorgensen, K., Christensen, H., Olsen, J. E. & Gram, L. (1997). Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis. Appl Environ Microbiol 63, 2189-2199.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2189-2199
    • Fonnesbech Vogel, B.1    Jorgensen, K.2    Christensen, H.3    Olsen, J.E.4    Gram, L.5
  • 8
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G. E., Wisotzkey, J. D. & Jurtshuk, P., Jr (1992). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42, 166-170.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 9
    • 0000798424 scopus 로고
    • A method for the detection of changes in gelatin due to bacteria
    • Frazier, W. C. (1926). A method for the detection of changes in gelatin due to bacteria. J Infect Dis 39, 302-306.
    • (1926) J Infect Dis , vol.39 , pp. 302-306
    • Frazier, W.C.1
  • 10
    • 0023088501 scopus 로고
    • Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures
    • Gram, L., Trolle, G. & Huss, H. H. (1987). Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures. Int J Food Microbiol 4, 65-72.
    • (1987) Int J Food Microbiol , vol.4 , pp. 65-72
    • Gram, L.1    Trolle, G.2    Huss, H.H.3
  • 11
    • 0018099415 scopus 로고
    • Rapid method for distinction of Gram-negative from Gram-positive bacteria
    • Gregerson, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
    • (1978) Eur J Appl Microbiol Biotechnol , vol.5 , pp. 123-127
    • Gregerson, T.1
  • 12
    • 0000686520 scopus 로고
    • Genetic characterization
    • Edited by P. Gerhardt, R.G.E. Murray, R.N. Costilow, E.W. Nester, W.A. Wood, N.R. Krieg & G.B. Phillips. Washington, DC: American Society for Microbiology
    • Johnson, J. L. (1981). Genetic characterization. In Manual of Methods for General Bacteriology, pp. 450-472. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
    • (1981) Manual of Methods for General Bacteriology , pp. 450-472
    • Johnson, J.L.1
  • 13
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 14
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 16
    • 0030838462 scopus 로고    scopus 로고
    • Tetragenococcus muriaticus sp. nov., a new moderately halophilic lactic acid bacterium isolated from fermented squid liver sauce
    • Satomi, M., Kimura, B., Mizoi, M., Sato, T. & Fujii, T. (1997). Tetragenococcus muriaticus sp. nov., a new moderately halophilic lactic acid bacterium isolated from fermented squid liver sauce. Int J Syst Bacteriol 47, 832-836.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 832-836
    • Satomi, M.1    Kimura, B.2    Mizoi, M.3    Sato, T.4    Fujii, T.5
  • 17
    • 0035989429 scopus 로고    scopus 로고
    • Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: Emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov
    • Satomi, M., Kimura, B., Hamada, T., Harayama, S. & Fujii, T. (2002). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Int J Syst Evol Microbiol 52, 739-747.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 739-747
    • Satomi, M.1    Kimura, B.2    Hamada, T.3    Harayama, S.4    Fujii, T.5
  • 18
    • 0037357631 scopus 로고    scopus 로고
    • Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines
    • Satomi, M., Oikawa, H. & Yano, Y. (2003). Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines. Int J Syst Evol Microbiol 53, 491-499.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 491-499
    • Satomi, M.1    Oikawa, H.Y.2
  • 19
    • 0442279284 scopus 로고    scopus 로고
    • Marinospirillum insulare sp. nov., a novel halophilic helical bacterium isolated from kusaya gravy
    • Satomi, M., Kimura, B., Hayashi, M., Okuzumi, M. & Fujii, T. (2004). Marinospirillum insulare sp. nov., a novel halophilic helical bacterium isolated from kusaya gravy. Int J Syst Evol Microbiol 54, 163-167.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 163-167
    • Satomi, M.1    Kimura, B.2    Hayashi, M.3    Okuzumi, M.4    Fujii, T.5
  • 20
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
    • (1994) Int J Syst Evol Microbiol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 21
    • 0027968068 scopus 로고
    • CLUSTAL W. improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 22
    • 0031888140 scopus 로고    scopus 로고
    • Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp
    • Venkateswaran, K., Dohmoto, N. & Harayama, S. (1998). Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp. Appl Environ Microbiol 64, 681-687.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 681-687
    • Venkateswaran, K.1    Dohmoto, N.2    Harayama, S.3
  • 23
    • 0032947007 scopus 로고    scopus 로고
    • Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov
    • 10 other authors
    • Venkateswaran, K., Moser, D. P., Dollhopf, M. E. & 10 other authors (1999). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49, 705-724.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 705-724
    • Venkateswaran, K.1    Moser, D.P.2    Dollhopf, M.E.3
  • 24
    • 0024033321 scopus 로고
    • International Committee on Systematic Bacteriology: Announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics
    • Wayne, L. G. (1988). International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. Zentralbl Bakteriol Mikrobiol Hyg A 268, 433-434.
    • (1988) Zentralbl Bakteriol Mikrobiol Hyg A , vol.268 , pp. 433-434
    • Wayne, L.G.1
  • 25
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
    • (1991) J Bacteriol , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 26
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987). Bacterial evolution. Microbiol Rev 51, 221-271.
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 27
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 28
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes
    • Yamamoto, S. & Harayama, S. (1998). Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int J Syst Bacteriol 48, 813-819.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2
  • 29
    • 0032931780 scopus 로고    scopus 로고
    • Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA-DNA hybridization
    • Yamamoto, S., Bouvet, P. J. & Harayama, S. (1999). Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization. Int J Syst Bacteriol 49, 87-95.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 87-95
    • Yamamoto, S.1    Bouvet, P.J.2    Harayama, S.3
  • 30
    • 0002948543 scopus 로고    scopus 로고
    • Stability and diversity of the genetic structure of a Shewanella putrefaciens population in the water column of the central Baltic
    • Ziemke, F., Brettar, I. & Hofle, M. G. (1997). Stability and diversity of the genetic structure of a Shewanella putrefaciens population in the water column of the central Baltic. Aquat Microb Ecol 13, 63-74.
    • (1997) Aquat Microb Ecol , vol.13 , pp. 63-74
    • Ziemke, F.1    Brettar, I.2    Hofle, M.G.3
  • 31
    • 0345628032 scopus 로고    scopus 로고
    • Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov
    • Ziemke, F., Hofle, M. G., Lalucat, J. & Rossello-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 179-186
    • Ziemke, F.1    Hofle, M.G.2    Lalucat, J.3    Rossello-Mora, R.4


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