Shewanella waksmanii sp. nov., isolated from a sipunculla (Phascolosoma japonicum)

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 5, 2003, Pages 1471-1477

  Ivanova, Elena P ^a,b   Nedashkovskaya, Olga I ^a   Zhukova, Natalia V ^c   Nicolau, Dan V ^b   Christen, Richard ^d   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b SWINBURNE UNIVERSITY OF TECHNOLOGY   (Australia)

^c INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^d UNIVERSITÉ CÔTE D'AZUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; CARBENICILLIN; CYTOSINE; DNA; ELASTIN; FATTY ACID; GELATIN; GENTAMICIN; GUANINE; ICOSAPENTAENOIC ACID; KANAMYCIN; RNA 16S;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; CONTROLLED STUDY; DNA DEGRADATION; DNA HYBRIDIZATION; GENUS; GRAM NEGATIVE FACULTATIVELY ANAEROBIC RODS; JAPAN; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DEGRADATION; RNA SEQUENCE; SEA; SEQUENCE HOMOLOGY; SHEWANELLA; SHEWANELLA FIDELIS; SHEWANELLA WAKSMANII; SPECIES; TEMPERATURE; TYPE STRAIN; WORM;

ANIMALS; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; INVERTEBRATES; MARINE BIOLOGY; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SHEWANELLA;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA; PHASCOLOSOMA; PHASCOLOSOMA JAPONICUM; PROKARYOTA; SHEWANELLA; SHEWANELLA FIDELIS; SHEWANELLA WAKSMANII; SIPUNCULA;

EID: 0141502464     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02630-0     Document Type: Article

References (28)

1. Barry, A. I. (1980). Procedures and theoretical considerations for testing antimicrobial agents in agar media. In Antibiotics in Laboratory Medicine, pp. 10-16. Edited by V. Logan. Baltimore: Williams & Wilkins.
2. Baumann, L., Baumann, P., Mandel, M. & Allen, R. D. (1972). Taxonomy of aerobic marine eubacteria. J Bacteriol 110, 402-429.
3. Berry, V. & Gascuel, O. (1996). Interpretation of bootstrap trees: threshold of clade selection and induced gain. Mol Biol Evol 13, 999-1011.
4. Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Rea, S. M., Nichols, P. D. & McMeekin, T. A. (1997). Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20: 5ω3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 47, 1040-1047.
5. Ezaki, T., Hashimoto, Y., Takeuchi, N., Yamamoto, H., Liu, S.-L., Miura, H., Matsui, K. & Yabuuchi, E. (1988). Simple genetic method to identify viridans group streptococci by colorimetric dot hybridization and fluorometric hybridization in microdilution wells. J Clin Microbiol 26, 1708-1713.
6. Gascuel, O. (1997). BIONJ: an improved version of the NJ algorithm based on a simple method of sequence data. Mol Biol Evol 14, 685-695.
7. Gauthier, G., Gauthier, M. & Christen, R. (1995). Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45, 755-761.
8. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, F. G., Garagulya, A. D., Gorshkova, N. M., Yumoto, N. & Yoshikawa, S. (1996). Characterization and identification of marine Alteromonas nigrifaciens strains and emendation of the description. Int J Syst Bacteriol 46, 223-228.
9. Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2001). Shewanella japonica sp. nov. Int J Syst Evol Microbiol 51, 1027-1033.
10. Ivanova, E. P., Sawabe, T., Hayashi, K., Gorshkova, N. M., Zhukova, N. V., Nedashkovskaya, O. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2003). Shewanella fidelis sp. nov., isolated from sediments and sea water. Int J Syst Evol Microbiol 53, 577-582.
11. MacDonell, M. T. & Colwell, R. R. (1985). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6, 171-182.
12. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
13. Makemson, J. C., Fulayfil, N. R., Landry, W., Van Ert, L. M., Wimpee, C. F., Widder, E. A. & Case, J. F. (1997). Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int J Syst Bacteriol 47, 1034-1039.
14. Moule, A. L. & Wilkinson, S. G. (1987). Polar lipids, fatty acids and isoprenoid quinones of Alteromonas putrefaciens (Shewanella putrefaciens). Syst Appl Microbiol 9, 192-198.
15. Myers, C. R. & Nealson, K. H. (1988). Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240, 1319-1321.
16. Nogi, Y., Kato, C. & Horikoshi, K. (1998). Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch Microbiol 170, 331-338.
17. Perrière, G. & Gouy, M. (1996). WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
18. Petrovskis, E. A., Vogel, T. M. & Adriaens, P. (1994). Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. FEMS Microbiol Lett 121, 357-364.
19. Russell, N. J. & Nichols, D. S. (1999). Polyunsaturated fatty acids in marine bacteria - a dogma rewritten. Microbiology 145, 767-779.
20. Sawabe, T., Makino, H., Tatsumi, M., Nakano, K., Tajima, K., Iqbal, M. M., Yumoto, I., Ezura, Y. & Christen, R. (1998). Pseudoalteromonas bacteriolytica sp. nov., a marine bacterium that is causative agent of red spot disease of Laminaria japonica. Int J Syst Bacteriol 48, 769-774.
21. Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 35, 925-931.
22. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by F. Gerhardt & 11 other editors. Washington, DC: American Society for Microbiology.
23. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition. Int J Syst Bacteriol 44, 846-849.
24. Svetashev, V. I., Vysotskii, M. V., Ivanova, E. P. & Mikhailov, V. V. (1995). Cellular fatty acid of Alteromonas species. Syst Appl Microbiol 18, 37-43.
25. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
26. Venkateswaran, K., Moser, D. P., Dollhopf, M. E. & 10 other authors (1999). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49, 705-724.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
28. Weiner, R. M., Coyne, V. E., Brayton, P., West, P. & Raiken, S. F. (1988). Alteromonas colwelliana sp. nov., an isolate from oyster habitats. Int J Syst Bacteriol 38, 240-244.