Shewanella irciniae sp. nov., a novel member of the family Shewanellaceae, isolated from the marine sponge Ircinia dendroides in the Bay of Villefranche, Mediterranean Sea

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 12, 2006, Pages 2871-2877

  Lee, On On ^a   Lau, Stanley C K ^b   Tsoi, Mandy M Y ^a   Li, Xiancui ^a   Plakhotnikova, Ioulia ^a   Dobretsov, Sergey ^a   Wu, Madeline C S ^a   Wong, Po Keung ^c   Weinbauer, Markus ^d   Qian, Pei Yuan ^a  

^a HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^d LABORATOIRE D OCÉANOGRAPHIE DE VILLEFRANCHE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; COMPARATIVE STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; MEDITERRANEAN SEA; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SHEWANELLA; SHEWANELLA IRCINIAE; SPONGE (PORIFERA); STRAIN DIFFERENCE; TAXONOMIC RANK;

ANIMALS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PORIFERA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SHEWANELLA;

BACTERIA (MICROORGANISMS); DENDROIDES; IRCINIA; NEGIBACTERIA; SHEWANELLA; SHEWANELLA ALGAE; SHEWANELLACEAE;

EID: 33845771745     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64562-0     Document Type: Article

References (41)

1. Acar, J. F. (1980). The disc susceptibility test. In Antibiotics in Laboratory and Medicine, pp. 24-54. Edited by V. Lorian. Baltimore: Williams & Wilkins.
2. Allan, V. J. M., Callow, M. E., Macaskie, L. E. & Paterson-Beedle, M. (2002). Effect of nutrient limitation on biofilm formation and phosphatase activity of a Citrobacter sp. Microbiology 148, 277-288.
3. Baumann, P. & Baumann, L. (1981). The marine gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. In The Prokaryotes, Vol. 1, pp. 1302-1331. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. Schlegel. Berlin: Springer.
4. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
5. Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Rea, S. M., Nichols, P. D. & McMeekin, T. A. (1997). Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20: 5ω3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 47, 1040-1047.
6. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-310. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
7. Coyne, V. E., Pillidge, C. J., Sledjeski, D. D., Hori, H., Ortiz-Conde, B. A., Muir, D. G., Weiner, R. M. & Colwell, R. R. (1989). Reclassification of Alteromonas colwelliana to the genus Shewanella by DNA-DNA hybridization, serology and 5S ribosomal RNA sequence data. Syst Appl Microbiol 12, 275-279.
8. Debois, J., Degreef, H., Vandepitte, J. & Spaepen, J. (1975). Pseudomonas putrefaciens as a cause of infection in humans. J Clin Pathol 28, 993-996.
9. Gao, M., Liu, H., Yang, M., Hu, J. & Shao, B. (2004). Indirect identification of isoprenoid quinones in Escherichia coli by LC-MS with atmospheric pressure chemical ionization in negative mode. J Basic Microbiol 44, 424-429.
10. Holmes, B., Lapage, S. P. & Mainick, H. (1975). Strains of Pseudomonas putrefaciens from clinical material. J Clin Pathol 28, 149-155.
11. Isnansetyo, A. & Kamei, Y. (2003). Pseudoalteromonas phenolica sp. nov., a novel marine bacterium that produces phenolic anti-methicillin-resistant Staphylococcus aureus substances. Int J Syst Evol Microbiol 53, 583-588.
12. Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2001). Shewanella japonica sp. nov. Int J Syst Evol Microbiol 51, 1027-1033.
13. Ivanova, E. P., Nedashkovskaya, O. I., Zhukova, N. V., Nicolau, D. V., Christen, R. & Mikhailov, V. V. (2003). Shewanella waksmanii sp. nov., isolated from a sipuncula (Phascolosoma japonicum). Int J Syst Evol Microbiol 53, 1471-1477.
14. Ivanova, E. P., Gorshkova, N. M., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Sergeev, A. F., Mikhailov, V. V. & Nicolau, D. V. (2004a). Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int J Syst Evol Microbiol 54, 1083-1087.
15. Ivanova, E. P., Nedashkovskaya, O. I., Sawabe, T., Zhukova, N. V., Frolova, G. M., Nicolau, D. V., Mikhailov, V. V. & Bowman, J. P. (2004b). Shewanella affinis sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 54, 1089-1093.
16. Ivanova, E. P., Flavier, S. & Christen, R. (2004c). Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54, 1773-1788.
17. Jensen, M. J., Tebo, B. M., Baumann, P., Mandel, M. & Nealson, K. H. (1980). Characterization of Alteromonas hanehai (sp. nov.), a nonfermentative luminous species of marine origin. Curr Microbiol 3, 311-315.
18. Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Wu, M., Wong, P. K. & Qian, P. Y. (2004). Loktanella hongkongensis sp. nov., a novel member of the α-Proteobacteria originating from marine biofilms in Hong Kong waters. Int J Syst Evol Microbiol 54, 2281-2284.
19. Lee, J. V., Gibson, D. M. & Shewan, J. M. (1981). Alteromonas putrefaciens sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 6. Int J Syst Bacteriol 31, 215-218.
20. Levin, R. E. (1972). Correlation of DNA base composition and metabolism of Pseudomonas putrefaciens isolates from food, human clinical specimens, and other sources. Antonie van Leeuwenhoek 38, 121-127.
21. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
22. MacDonell, M. T. & Colwell, R. R. (1985). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6, 171-182.
23. MacDonell, M. T., Singleton, F. L. & Hood, M. A. (1982). Diluent composition for use of API 20E in characterizing marine and estuarine bacteria. Appl Environ Microbiol 44, 423-427.
24. Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Myers, C. R. & Nealson, K. H. (1988). Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240, 1319-1321.
26. Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155-1161.
27. Nedashkovskaya, O. I., Kim, S. B., Hans, S. K. & 7 other authors (2003). Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53, 1967-1971.
28. Neu, B., Voigt, A., Mitlohner, R. & 7 other authors (2001). Biological cells as templates for hollow microcapsules. J Microencapsul 18, 385-395.
29. Norris, J. R., Ribbons, D. W. & Varma, A. K. (editors) (1985). Methods in Microbiology, vol. 18. London: Academic Press.
30. Petrovskis, E. A., Vogel, T. M. & Adriaens, P. (1994). Effects of electron acceptors and donors on transformation of tetrachloro-methane by Shewanella putrefaciens MR-1. FEMS Microbiol Leff 121, 357-364.
31. Russell, N. J. & Nichols, D. S. (1999). Polyunsaturated fatty acids in marine bacteria - a dogma rewritten. Microbiology 145, 767-779.
32. Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron-reducing Alteromonas putrefaciens from oil field fluids. Can J Microbiol 33, 366-371.
33. Simidu, U., Kita-Tsukamoto, K., Yasumoto, K. & Yotsu, M. (1990). Taxonomy of four marine bacterial strains that produce tetrodotoxin. Int J Syst Bacteriol 40, 331-336.
34. Skerratt, J. H., Bowman, J. P. & Nichols, P. D. (2002). Shewanella olleyana sp. nov., a marine species isolated from a temperate estuary which produces high levels of polyunsaturated fatty acids. Int J Syst Evol Microbiol 52, 2101-2106.
35. Smibert R. M. & Krieg, N. R. (1994). Phenotypic characteristics. In Methods for General and Molecular Biology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
36. Steyn, P. L., Segers, P., Vancanneyt M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165-177.
37. Venkateswaran, K., Dollhopf, M. E., Aller, R., Stackebrandt, E. & Nealson, K. H. (1998). Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds. Int J Syst Bacteriol 48, 965-972.
38. Wichels, A., Würtz, S., Döpke, H., Schütt, C. & Gerdts, G. (2006). Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas). FEMS Microbiol Ecol 56, 102-118.
39. Xu, M., Guo, J., Cen, Y., Zhong, X., Cao, W. & Sun, G. (2005). Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55, 363-368.
40. Yoon, J. H., Kang, K. H., Oh, T. K. & Park Y. H. (2004a). Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. Int J Syst Evol Microbiol 54, 487-491.
41. Yoon, J. H., Yeo, S. H., Kim, I. G. & Oh, T. K. (2004b). Shewanella marisflavi sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 2347-2352.