-
1
-
-
33750467991
-
Unravelling the complexities of the NF-κB signalling pathway using mouse knockout and transgenic models
-
DOI 10.1038/sj.onc.1209944, PII 1209944
-
Gerondakis, S., Grumont, R., Gugasyan, R., Wong, L., Isomura, I., Ho, W., and Banerjee, A. (2006) Unravelling the complexities of the NF-kappaB signalling pathway using mouse knockout and transgenic models. Oncogene 25, 6781-6799 (Pubitemid 44657852)
-
(2006)
Oncogene
, vol.25
, Issue.51
, pp. 6781-6799
-
-
Gerondakis, S.1
Grumont, R.2
Gugasyan, R.3
Wong, L.4
Isomura, I.5
Ho, W.6
Banerjee, A.7
-
2
-
-
0036234459
-
Missing pieces in the NF-kappaB puzzle
-
Ghosh, S., and Karin, M. (2002) Missing pieces in the NF-kappaB puzzle. Cell 109 (Suppl.), S81-S96
-
(2002)
Cell
, vol.109
, Issue.SUPPL.
-
-
Ghosh, S.1
Karin, M.2
-
3
-
-
33750466230
-
Introduction to NF-kappaB: Players, pathways, perspectives
-
Gilmore, T. D. (2006) Introduction to NF-kappaB: players, pathways, perspectives. Oncogene 25, 6680-6684
-
(2006)
Oncogene
, vol.25
, pp. 6680-6684
-
-
Gilmore, T.D.1
-
4
-
-
4444376712
-
Signaling to NF-kappaB
-
Hayden, M. S., and Ghosh, S. (2004) Signaling to NF-kappaB. Genes Dev. 18, 2195-2224
-
(2004)
Genes Dev
, vol.18
, pp. 2195-2224
-
-
Hayden, M.S.1
Ghosh, S.2
-
5
-
-
0032939903
-
Multiple signals converging on NF-kappaB
-
Mercurio, F., and Manning, A. M. (1999) Multiple signals converging on NF-kappaB. Curr. Opin. Cell Biol. 11, 226-232
-
(1999)
Curr. Opin. Cell Biol.
, vol.11
, pp. 226-232
-
-
Mercurio, F.1
Manning, A.M.2
-
6
-
-
0037426608
-
Analysis of the phenotypes of Jurkat clones with different TRAIL-sensitivities
-
Jang, Y. J., Park, K. S., Chung, H. Y., and Kim, H. I. (2003) Analysis of the phenotypes of Jurkat clones with different TRAIL-sensitivities. Cancer Lett. 194, 107-117
-
(2003)
Cancer Lett
, vol.194
, pp. 107-117
-
-
Jang, Y.J.1
Park, K.S.2
Chung, H.Y.3
Kim, H.I.4
-
7
-
-
33646001448
-
Dissection of the NF-kappaB signalling cascade in transgenic and knockout mice
-
Pasparakis, M., Luedde, T., and Schmidt-Supprian, M. (2006) Dissection of the NF-kappaB signalling cascade in transgenic and knockout mice. Cell Death Differ. 13, 861-872
-
(2006)
Cell Death Differ
, vol.13
, pp. 861-872
-
-
Pasparakis, M.1
Luedde, T.2
Schmidt-Supprian, M.3
-
8
-
-
24944489952
-
Stimulus specificity of gene expression programs determined by temporal control of IKK activity
-
DOI 10.1126/science.1113319
-
Werner, S. L., Barken, D., and Hoffmann, A. (2005) Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science 309, 1857-1861 (Pubitemid 41325096)
-
(2005)
Science
, vol.309
, Issue.5742
, pp. 1857-1861
-
-
Werner, S.L.1
Barken, D.2
Hoffmann, A.3
-
9
-
-
0037044575
-
The IκB-NF-κB signaling module: Temporal control and selective gene activation
-
DOI 10.1126/science.1071914
-
Hoffmann, A., Levchenko, A., Scott, M. L., and Baltimore, D. (2002) The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science 298, 1241-1245 (Pubitemid 35285493)
-
(2002)
Science
, vol.298
, Issue.5596
, pp. 1241-1245
-
-
Hoffmann, A.1
Levchenko, A.2
Scott, M.L.3
Baltimore, D.4
-
10
-
-
20444478655
-
Identification of direct genomic targets downstream of the nuclear factor-κB transcription factor mediating tumor necrosis factor signaling
-
DOI 10.1074/jbc.M500437200
-
Tian, B., Nowak, D. E., Jamaluddin, M., Wang, S., and Brasier, A. R. (2005) Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling. J. Biol. Chem. 280, 17435-17448 (Pubitemid 41389215)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.17
, pp. 17435-17448
-
-
Tian, B.1
Nowak, D.E.2
Jamaluddin, M.3
Wang, S.4
Brasier, A.R.5
-
11
-
-
33747388013
-
IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression
-
DOI 10.1083/jcb.200510155
-
Kearns, J. D., Basak, S., Werner, S. L., Huang, C. S., and Hoffmann, A. (2006) IkappaBepsilon provides negative feedback to control NF-kappaB oscillations, signaling dynamics, and inflammatory gene expression. J. Cell Biol. 173, 659-664 (Pubitemid 46165574)
-
(2006)
Journal of Cell Biology
, vol.173
, Issue.5
, pp. 659-664
-
-
Kearns, J.D.1
Basak, S.2
Werner, S.L.3
Huang, C.S.4
Hoffmann, A.5
-
12
-
-
0028986194
-
I kappa B-beta regulates the persistent response in a biphasic activation of NF-kappa B
-
Thompson, J. E., Phillips, R. J., Erdjument-Bromage, H., Tempst, P., and Ghosh, S. (1995) I kappa B-beta regulates the persistent response in a biphasic activation of NF-kappa B. Cell 80, 573-582
-
(1995)
Cell
, vol.80
, pp. 573-582
-
-
Thompson, J.E.1
Phillips, R.J.2
Erdjument-Bromage, H.3
Tempst, P.4
Ghosh, S.5
-
13
-
-
34047174559
-
A module of negative feedback regulators defines growth factor signaling
-
DOI 10.1038/ng1987, PII NG1987
-
Amit, I., Citri, A., Shay, T., Lu, Y., Katz, M., Zhang, F., Tarcic, G., Siwak, D., Lahad, J., Jacob-Hirsch, J., Amariglio, N., Vaisman, N., Segal, E., Rechavi, G., Alon, U., Mills, G. B., Domany, E., and Yarden, Y. (2007) A module of negative feedback regulators defines growth factor signaling. Nat. Genet. 39, 503-512 (Pubitemid 46514770)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 503-512
-
-
Amit, I.1
Citri, A.2
Shay, T.3
Lu, Y.4
Katz, M.5
Zhang, F.6
Tarcic, G.7
Siwak, D.8
Lahad, J.9
Jacob-Hirsch, J.10
Amariglio, N.11
Vaisman, N.12
Segal, E.13
Rechavi, G.14
Alon, U.15
Mills, G.B.16
Domany, E.17
Yarden, Y.18
-
14
-
-
0030162729
-
Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators
-
Wagner, A. (1996) Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators. Biol. Cybern. 74, 557-567
-
(1996)
Biol. Cybern.
, vol.74
, pp. 557-567
-
-
Wagner, A.1
-
15
-
-
7444254365
-
Oscillations in NF-κB signaling control the dynamics of gene expression
-
DOI 10.1126/science.1099962
-
Nelson, D. E., Ihekwaba, A. E., Elliott, M., Johnson, J. R., Gibney, C. A., Foreman, B. E., Nelson, G., See, V., Horton, C. A., Spiller, D. G., Edwards, S. W., McDowell, H. P., Unitt, J. F., Sullivan, E., Grimley, R., Benson, N., Broomhead, D., Kell, D. B., and White, M. R. (2004) Oscillations in NF-kappaB signaling control the dynamics of gene expression. Science 306, 704-708 (Pubitemid 39440922)
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 704-708
-
-
Nelson, D.E.1
Ihekwaba, A.E.C.2
Elliott, M.3
Johnson, J.R.4
Gibney, C.A.5
Foreman, B.E.6
Nelson, C.7
See, V.8
Horton, C.A.9
Spiller, D.G.10
Edwards, S.W.11
McDowell, H.P.12
Unitt, J.F.13
Sullivan, E.14
Grimley, R.15
Benson, N.16
Broomhead, D.17
Kell, D.B.18
White, M.R.H.19
-
16
-
-
34247094671
-
Single-cell time-lapse imaging of the dynamic control of NF-κB signalling
-
DOI 10.1042/BST0350263
-
Sillitoe, K., Horton, C., Spiller, D. G., and White, M. R. (2007) Single-cell time-lapse imaging of the dynamic control of NF-kappaB signalling. Biochem. Soc. Trans. 35, 263-266 (Pubitemid 46596485)
-
(2007)
Biochemical Society Transactions
, vol.35
, Issue.2
, pp. 263-266
-
-
Sillitoe, K.1
Horton, C.2
Spiller, D.G.3
White, M.R.H.4
-
17
-
-
33646817119
-
NF-kappaB oscillations and cell-to-cell variability
-
Hayot, F., and Jayaprakash, C. (2006) NF-kappaB oscillations and cell-to-cell variability. J. Theor. Biol. 240, 583-591
-
(2006)
J. Theor. Biol.
, vol.240
, pp. 583-591
-
-
Hayot, F.1
Jayaprakash, C.2
-
18
-
-
33646203562
-
Stochastic regulation in early immune response
-
Lipniacki, T., Paszek, P., Brasier, A. R., Luxon, B. A., and Kimmel, M. (2006) Stochastic regulation in early immune response. Biophys. J. 90, 725-742
-
(2006)
Biophys. J.
, vol.90
, pp. 725-742
-
-
Lipniacki, T.1
Paszek, P.2
Brasier, A.R.3
Luxon, B.A.4
Kimmel, M.5
-
20
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake, W. J., Balázsi, G., Kohanski, M. A., Isaacs, F. J., Murphy, K. F., Kuang, Y., Cantor, C. R., Walt, D. R., and Collins, J. J. (2003) Noise in eukaryotic gene expression. Nature 422, 633-637
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Balázsi, G.2
Kohanski, M.A.3
Isaacs, F.J.4
Murphy, K.F.5
Kuang, Y.6
Cantor, C.R.7
Walt, D.R.8
Collins, J.J.9
-
21
-
-
19544379881
-
Stochasticity in gene expression: From theories to phenotypes
-
DOI 10.1038/nrg1615
-
Kaern, M., Elston, T. C., Blake, W. J., and Collins, J. J. (2005) Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6, 451-464 (Pubitemid 40733890)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
22
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai, L., Friedman, N., and Xie, X. S. (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440, 358-362
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
23
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
DOI 10.1371/journal.pbio.0040309
-
Raj, A., Peskin, C. S., Tranchina, D., Vargas, D. Y., and Tyagi, S. (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol. 4, e309 (Pubitemid 44610091)
-
(2006)
PLoS Biology
, vol.4
, Issue.10
, pp. 1707-1719
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
24
-
-
33845616177
-
Phenotypic Consequences of Promoter-Mediated Transcriptional Noise
-
DOI 10.1016/j.molcel.2006.11.003, PII S1097276506007441
-
Blake, W. J., Balazsi, G., Kohanski, M. A., Isaacs, F. J., Murphy, K. F., Kuang, Y., Cantor, C. R., Walt, D. R., and Collins, J. J. (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol. Cell 24, 853-865 (Pubitemid 44960090)
-
(2006)
Molecular Cell
, vol.24
, Issue.6
, pp. 853-865
-
-
Blake, W.J.1
Balazsi, G.2
Kohanski, M.A.3
Isaacs, F.J.4
Murphy, K.F.5
Kuang, Y.6
Cantor, C.R.7
Walt, D.R.8
Collins, J.J.9
-
25
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
DOI 10.1038/ng1807, PII N1807
-
Bar-Even, A., Paulsson, J., Maheshri, N., Carmi, M., O'Shea, E., Pilpel, Y., and Barkai, N. (2006) Noise in protein expression scales with natural protein abundance. Nat. Genet. 38, 636-643 (Pubitemid 43927304)
-
(2006)
Nature Genetics
, vol.38
, Issue.6
, pp. 636-643
-
-
Bar-Even, A.1
Paulsson, J.2
Maheshri, N.3
Carmi, M.4
O'Shea, E.5
Pilpel, Y.6
Barkai, N.7
-
26
-
-
34047262163
-
Stochastic gene expression: From single molecules to the proteome
-
DOI 10.1016/j.gde.2007.02.007, PII S0959437X07000330, Chromosomes and Expression Mechanisms
-
Kaufmann, B. B., and van Oudenaarden, A. (2007) Stochastic gene expression: from single molecules to the proteome. Curr. Opin. Genet. Dev. 17, 107-112 (Pubitemid 46551719)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.2
, pp. 107-112
-
-
Kaufmann, B.B.1
Van Oudenaarden, A.2
-
28
-
-
0242425970
-
Improved leap-size selection for accelerated stochastic simulation
-
Gillespie, D. T., and Petzold, L. R. (2003) Improved leap-size selection for accelerated stochastic simulation. J. Chem. Physics 119, 8229-9234
-
(2003)
J. Chem. Physics
, vol.119
, pp. 8229-9234
-
-
Gillespie, D.T.1
Petzold, L.R.2
-
29
-
-
17644396339
-
Dizzy: Stochastic simulation of large-scale genetic regulatory networks
-
DOI 10.1142/S0219720005001132, PII S0219720005001132
-
Ramsey, S., Orrell, D., and Bolouri, H. (2005) Dizzy: stochastic simulation of large-scale genetic regulatory networks. J. Bioinform. Comput. Biol. 3, 415-436 (Pubitemid 40561395)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.2
, pp. 415-436
-
-
Ramsey, S.1
Orrell, D.2
Bolouri, H.3
-
30
-
-
45249120816
-
Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells
-
DOI 10.1186/1471-2164-9-268
-
Subkhankulova, T., Gilchrist, M. J., and Livesey, F. J. (2008) Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells. BMC Genomics 9, 268 (Pubitemid 351837405)
-
(2008)
BMC Genomics
, vol.9
, pp. 268
-
-
Subkhankulova, T.1
Gilchrist, M.J.2
Livesey, F.J.3
-
31
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
DOI 10.1038/nature04785, PII N04785
-
Newman, J. R., Ghaemmaghami, S., Ihmels, J., Breslow, D. K., Noble, M., DeRisi, J. L., and Weissman, J. S. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441, 840-846 (Pubitemid 43910413)
-
(2006)
Nature
, vol.441
, Issue.7095
, pp. 840-846
-
-
Newman, J.R.S.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
Derisi, J.L.6
Weissman, J.S.7
-
32
-
-
33746605149
-
Minimal model of spiky oscillations in NF-κB signaling
-
DOI 10.1073/pnas.0604085103
-
Krishna, S., Jensen, M. H., and Sneppen, K. (2006) Minimal model of spiky oscillations in NF-kappaB signaling. Proc. Natl. Acad. Sci. U. S. A. 103, 10840-10845 (Pubitemid 44148382)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.29
, pp. 10840-10845
-
-
Krishna, S.1
Jensen, M.H.2
Sneppen, K.3
-
33
-
-
11844261534
-
Reductions in IκBε and changes in NF-κB activity during B lymphocyte differentiation
-
Doerre, S., Mesires, K. P., Daley, K. M., McCarty, T., Knoetig, S., and Corley, R. B. (2005) Reductions in I kappa B epsilon and changes in NF-kappa B activity during B lymphocyte differentiation. J. Immunol. 174, 983-991 (Pubitemid 40094294)
-
(2005)
Journal of Immunology
, vol.174
, Issue.2
, pp. 983-991
-
-
Doerre, S.1
Mesires, K.P.2
Daley, K.M.3
McCarty, T.4
Knoetig, S.5
Corley, R.B.6
-
34
-
-
0029664798
-
Activation of NF-kappaB/Rel by CD40 engagement induces the mouse germ line immunoglobulin Cgamma1 promoter
-
Lin, S. C., and Stavnezer, J. (1996) Activation of NF-kappaB/Rel by CD40 engagement induces the mouse germ line immunoglobulin Cgamma1 promoter. Mol. Cell. Biol. 16, 4591-4603
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 4591-4603
-
-
Lin, S.C.1
Stavnezer, J.2
-
35
-
-
33646942168
-
Defects of class-switch recombination
-
Notarangelo, L. D., Lanzi, G., Peron, S., and Durandy, A. (2006) Defects of class-switch recombination. J. Allergy Clin. Immunol. 117, 855-864
-
(2006)
J. Allergy Clin. Immunol.
, vol.117
, pp. 855-864
-
-
Notarangelo, L.D.1
Lanzi, G.2
Peron, S.3
Durandy, A.4
-
36
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush, J. (2001) Computational analysis of microarray data. Nature Rev. Genet. 2, 418-427
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
37
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: Application to sporulation time series
-
Raychaudhuri, S., Stuart, J. M., and Altman, R. B. (2000) Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac. Symp. Biocomput. 455-466
-
(2000)
Pac. Symp. Biocomput.
, pp. 455-466
-
-
Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
-
38
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu, J., Xiao, J., Ren, X., Lao, K., and Xie, X. S. (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311, 1600-1603
-
(2006)
Science
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
39
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
DOI 10.1038/nature06965, PII NATURE06965
-
Chang, H. H., Hemberg, M., Barahona, M., Ingber, D. E., and Huang, S. (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453, 544-547 (Pubitemid 351733323)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
40
-
-
38149082553
-
Epigenetic gene expression noise and phenotypic diversification of clonal cell populations
-
Neildez-Nguyen, T. M., Parisot, A., Vignal, C., Rameau, P., Stockholm, D., Picot, J., Allo, V., Le Bec, C., Laplace, C., and Paldi, A. (2008) Epigenetic gene expression noise and phenotypic diversification of clonal cell populations. Differentiation 76, 33-40
-
(2008)
Differentiation
, vol.76
, pp. 33-40
-
-
Neildez-Nguyen, T.M.1
Parisot, A.2
Vignal, C.3
Rameau, P.4
Stockholm, D.5
Picot, J.6
Allo, V.7
Le Bec, C.8
Laplace, C.9
Paldi, A.10
-
41
-
-
0035883151
-
NF-κB signaling pathways in mammalian and insect innate immunity
-
DOI 10.1101/gad.909001
-
Silverman, N., and Maniatis, T. (2001) NF-kappaB signaling pathways in mammalian and insect innate immunity. Genes Dev. 15, 2321-2342 (Pubitemid 32899738)
-
(2001)
Genes and Development
, vol.15
, Issue.18
, pp. 2321-2342
-
-
Silverman, N.1
Maniatis, T.2
-
42
-
-
32944468017
-
The evolution of adaptive immune systems
-
Cooper, M. D., and Alder, M. N. (2006) The evolution of adaptive immune systems. Cell 124, 815-822
-
(2006)
Cell
, vol.124
, pp. 815-822
-
-
Cooper, M.D.1
Alder, M.N.2
-
43
-
-
9144233525
-
Database resources of the National Center for Biotechnology Information: Update
-
Sayers, E. W., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., Church, D. M., DiCuccio, M., Edgar, R., Federhen, S., Feolo, M., Geer, L. Y., Helmberg, W., Kapustin, Y., Landsman, D., Lipman, D. J., Madden, T. L., Maglott, D. R., Miller, V., Mizrachi, I., Ostell, J., Pruitt, K. D., Schuler, G. D., Sequeira, E., Sherry, S. T., Shumway, M., Sirotkin, K., Souvorov, A., Starchenko, G., Tatusova, T. A., Wagner, L., Yaschenko, E., and Ye, J. (2009) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37, D5-15 (Pubitemid 38081599)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS
-
-
Wheeler, D.L.1
Church, D.M.2
Edgar, R.3
Federhen, S.4
Helmberg, W.5
Madden, T.L.6
Pontius, J.U.7
Schuler, G.D.8
Schriml, L.M.9
Sequeira, E.10
Suzek, T.O.11
Tatusova, T.A.12
Wagner, L.13
|