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Volumn 23, Issue 9, 2009, Pages 2796-2802

Multiple roles of the NF-κB signaling pathway regulated by coupled negative feedback circuits

Author keywords

Design principle; Heterogeneity; Mathematical model; Oscillations; Stochastic simulations; Systems biology

Indexed keywords

I KAPPA B ALPHA; I KAPPA B KINASE EPSILON; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MESSENGER RNA;

EID: 70349328548     PISSN: 08926638     EISSN: 15306860     Source Type: Journal    
DOI: 10.1096/fj.09-130369     Document Type: Article
Times cited : (18)

References (43)
  • 1
    • 33750467991 scopus 로고    scopus 로고
    • Unravelling the complexities of the NF-κB signalling pathway using mouse knockout and transgenic models
    • DOI 10.1038/sj.onc.1209944, PII 1209944
    • Gerondakis, S., Grumont, R., Gugasyan, R., Wong, L., Isomura, I., Ho, W., and Banerjee, A. (2006) Unravelling the complexities of the NF-kappaB signalling pathway using mouse knockout and transgenic models. Oncogene 25, 6781-6799 (Pubitemid 44657852)
    • (2006) Oncogene , vol.25 , Issue.51 , pp. 6781-6799
    • Gerondakis, S.1    Grumont, R.2    Gugasyan, R.3    Wong, L.4    Isomura, I.5    Ho, W.6    Banerjee, A.7
  • 2
    • 0036234459 scopus 로고    scopus 로고
    • Missing pieces in the NF-kappaB puzzle
    • Ghosh, S., and Karin, M. (2002) Missing pieces in the NF-kappaB puzzle. Cell 109 (Suppl.), S81-S96
    • (2002) Cell , vol.109 , Issue.SUPPL.
    • Ghosh, S.1    Karin, M.2
  • 3
    • 33750466230 scopus 로고    scopus 로고
    • Introduction to NF-kappaB: Players, pathways, perspectives
    • Gilmore, T. D. (2006) Introduction to NF-kappaB: players, pathways, perspectives. Oncogene 25, 6680-6684
    • (2006) Oncogene , vol.25 , pp. 6680-6684
    • Gilmore, T.D.1
  • 4
    • 4444376712 scopus 로고    scopus 로고
    • Signaling to NF-kappaB
    • Hayden, M. S., and Ghosh, S. (2004) Signaling to NF-kappaB. Genes Dev. 18, 2195-2224
    • (2004) Genes Dev , vol.18 , pp. 2195-2224
    • Hayden, M.S.1    Ghosh, S.2
  • 5
    • 0032939903 scopus 로고    scopus 로고
    • Multiple signals converging on NF-kappaB
    • Mercurio, F., and Manning, A. M. (1999) Multiple signals converging on NF-kappaB. Curr. Opin. Cell Biol. 11, 226-232
    • (1999) Curr. Opin. Cell Biol. , vol.11 , pp. 226-232
    • Mercurio, F.1    Manning, A.M.2
  • 6
    • 0037426608 scopus 로고    scopus 로고
    • Analysis of the phenotypes of Jurkat clones with different TRAIL-sensitivities
    • Jang, Y. J., Park, K. S., Chung, H. Y., and Kim, H. I. (2003) Analysis of the phenotypes of Jurkat clones with different TRAIL-sensitivities. Cancer Lett. 194, 107-117
    • (2003) Cancer Lett , vol.194 , pp. 107-117
    • Jang, Y.J.1    Park, K.S.2    Chung, H.Y.3    Kim, H.I.4
  • 7
    • 33646001448 scopus 로고    scopus 로고
    • Dissection of the NF-kappaB signalling cascade in transgenic and knockout mice
    • Pasparakis, M., Luedde, T., and Schmidt-Supprian, M. (2006) Dissection of the NF-kappaB signalling cascade in transgenic and knockout mice. Cell Death Differ. 13, 861-872
    • (2006) Cell Death Differ , vol.13 , pp. 861-872
    • Pasparakis, M.1    Luedde, T.2    Schmidt-Supprian, M.3
  • 8
    • 24944489952 scopus 로고    scopus 로고
    • Stimulus specificity of gene expression programs determined by temporal control of IKK activity
    • DOI 10.1126/science.1113319
    • Werner, S. L., Barken, D., and Hoffmann, A. (2005) Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science 309, 1857-1861 (Pubitemid 41325096)
    • (2005) Science , vol.309 , Issue.5742 , pp. 1857-1861
    • Werner, S.L.1    Barken, D.2    Hoffmann, A.3
  • 9
    • 0037044575 scopus 로고    scopus 로고
    • The IκB-NF-κB signaling module: Temporal control and selective gene activation
    • DOI 10.1126/science.1071914
    • Hoffmann, A., Levchenko, A., Scott, M. L., and Baltimore, D. (2002) The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science 298, 1241-1245 (Pubitemid 35285493)
    • (2002) Science , vol.298 , Issue.5596 , pp. 1241-1245
    • Hoffmann, A.1    Levchenko, A.2    Scott, M.L.3    Baltimore, D.4
  • 10
    • 20444478655 scopus 로고    scopus 로고
    • Identification of direct genomic targets downstream of the nuclear factor-κB transcription factor mediating tumor necrosis factor signaling
    • DOI 10.1074/jbc.M500437200
    • Tian, B., Nowak, D. E., Jamaluddin, M., Wang, S., and Brasier, A. R. (2005) Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling. J. Biol. Chem. 280, 17435-17448 (Pubitemid 41389215)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.17 , pp. 17435-17448
    • Tian, B.1    Nowak, D.E.2    Jamaluddin, M.3    Wang, S.4    Brasier, A.R.5
  • 11
    • 33747388013 scopus 로고    scopus 로고
    • IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression
    • DOI 10.1083/jcb.200510155
    • Kearns, J. D., Basak, S., Werner, S. L., Huang, C. S., and Hoffmann, A. (2006) IkappaBepsilon provides negative feedback to control NF-kappaB oscillations, signaling dynamics, and inflammatory gene expression. J. Cell Biol. 173, 659-664 (Pubitemid 46165574)
    • (2006) Journal of Cell Biology , vol.173 , Issue.5 , pp. 659-664
    • Kearns, J.D.1    Basak, S.2    Werner, S.L.3    Huang, C.S.4    Hoffmann, A.5
  • 12
    • 0028986194 scopus 로고
    • I kappa B-beta regulates the persistent response in a biphasic activation of NF-kappa B
    • Thompson, J. E., Phillips, R. J., Erdjument-Bromage, H., Tempst, P., and Ghosh, S. (1995) I kappa B-beta regulates the persistent response in a biphasic activation of NF-kappa B. Cell 80, 573-582
    • (1995) Cell , vol.80 , pp. 573-582
    • Thompson, J.E.1    Phillips, R.J.2    Erdjument-Bromage, H.3    Tempst, P.4    Ghosh, S.5
  • 14
    • 0030162729 scopus 로고    scopus 로고
    • Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators
    • Wagner, A. (1996) Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators. Biol. Cybern. 74, 557-567
    • (1996) Biol. Cybern. , vol.74 , pp. 557-567
    • Wagner, A.1
  • 16
    • 34247094671 scopus 로고    scopus 로고
    • Single-cell time-lapse imaging of the dynamic control of NF-κB signalling
    • DOI 10.1042/BST0350263
    • Sillitoe, K., Horton, C., Spiller, D. G., and White, M. R. (2007) Single-cell time-lapse imaging of the dynamic control of NF-kappaB signalling. Biochem. Soc. Trans. 35, 263-266 (Pubitemid 46596485)
    • (2007) Biochemical Society Transactions , vol.35 , Issue.2 , pp. 263-266
    • Sillitoe, K.1    Horton, C.2    Spiller, D.G.3    White, M.R.H.4
  • 17
    • 33646817119 scopus 로고    scopus 로고
    • NF-kappaB oscillations and cell-to-cell variability
    • Hayot, F., and Jayaprakash, C. (2006) NF-kappaB oscillations and cell-to-cell variability. J. Theor. Biol. 240, 583-591
    • (2006) J. Theor. Biol. , vol.240 , pp. 583-591
    • Hayot, F.1    Jayaprakash, C.2
  • 21
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: From theories to phenotypes
    • DOI 10.1038/nrg1615
    • Kaern, M., Elston, T. C., Blake, W. J., and Collins, J. J. (2005) Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6, 451-464 (Pubitemid 40733890)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 22
    • 33645027986 scopus 로고    scopus 로고
    • Stochastic protein expression in individual cells at the single molecule level
    • Cai, L., Friedman, N., and Xie, X. S. (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440, 358-362
    • (2006) Nature , vol.440 , pp. 358-362
    • Cai, L.1    Friedman, N.2    Xie, X.S.3
  • 23
    • 33748994704 scopus 로고    scopus 로고
    • Stochastic mRNA synthesis in mammalian cells
    • DOI 10.1371/journal.pbio.0040309
    • Raj, A., Peskin, C. S., Tranchina, D., Vargas, D. Y., and Tyagi, S. (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol. 4, e309 (Pubitemid 44610091)
    • (2006) PLoS Biology , vol.4 , Issue.10 , pp. 1707-1719
    • Raj, A.1    Peskin, C.S.2    Tranchina, D.3    Vargas, D.Y.4    Tyagi, S.5
  • 25
    • 33745287724 scopus 로고    scopus 로고
    • Noise in protein expression scales with natural protein abundance
    • DOI 10.1038/ng1807, PII N1807
    • Bar-Even, A., Paulsson, J., Maheshri, N., Carmi, M., O'Shea, E., Pilpel, Y., and Barkai, N. (2006) Noise in protein expression scales with natural protein abundance. Nat. Genet. 38, 636-643 (Pubitemid 43927304)
    • (2006) Nature Genetics , vol.38 , Issue.6 , pp. 636-643
    • Bar-Even, A.1    Paulsson, J.2    Maheshri, N.3    Carmi, M.4    O'Shea, E.5    Pilpel, Y.6    Barkai, N.7
  • 26
    • 34047262163 scopus 로고    scopus 로고
    • Stochastic gene expression: From single molecules to the proteome
    • DOI 10.1016/j.gde.2007.02.007, PII S0959437X07000330, Chromosomes and Expression Mechanisms
    • Kaufmann, B. B., and van Oudenaarden, A. (2007) Stochastic gene expression: from single molecules to the proteome. Curr. Opin. Genet. Dev. 17, 107-112 (Pubitemid 46551719)
    • (2007) Current Opinion in Genetics and Development , vol.17 , Issue.2 , pp. 107-112
    • Kaufmann, B.B.1    Van Oudenaarden, A.2
  • 28
    • 0242425970 scopus 로고    scopus 로고
    • Improved leap-size selection for accelerated stochastic simulation
    • Gillespie, D. T., and Petzold, L. R. (2003) Improved leap-size selection for accelerated stochastic simulation. J. Chem. Physics 119, 8229-9234
    • (2003) J. Chem. Physics , vol.119 , pp. 8229-9234
    • Gillespie, D.T.1    Petzold, L.R.2
  • 29
    • 17644396339 scopus 로고    scopus 로고
    • Dizzy: Stochastic simulation of large-scale genetic regulatory networks
    • DOI 10.1142/S0219720005001132, PII S0219720005001132
    • Ramsey, S., Orrell, D., and Bolouri, H. (2005) Dizzy: stochastic simulation of large-scale genetic regulatory networks. J. Bioinform. Comput. Biol. 3, 415-436 (Pubitemid 40561395)
    • (2005) Journal of Bioinformatics and Computational Biology , vol.3 , Issue.2 , pp. 415-436
    • Ramsey, S.1    Orrell, D.2    Bolouri, H.3
  • 30
    • 45249120816 scopus 로고    scopus 로고
    • Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells
    • DOI 10.1186/1471-2164-9-268
    • Subkhankulova, T., Gilchrist, M. J., and Livesey, F. J. (2008) Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells. BMC Genomics 9, 268 (Pubitemid 351837405)
    • (2008) BMC Genomics , vol.9 , pp. 268
    • Subkhankulova, T.1    Gilchrist, M.J.2    Livesey, F.J.3
  • 31
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • DOI 10.1038/nature04785, PII N04785
    • Newman, J. R., Ghaemmaghami, S., Ihmels, J., Breslow, D. K., Noble, M., DeRisi, J. L., and Weissman, J. S. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441, 840-846 (Pubitemid 43910413)
    • (2006) Nature , vol.441 , Issue.7095 , pp. 840-846
    • Newman, J.R.S.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5    Derisi, J.L.6    Weissman, J.S.7
  • 33
    • 11844261534 scopus 로고    scopus 로고
    • Reductions in IκBε and changes in NF-κB activity during B lymphocyte differentiation
    • Doerre, S., Mesires, K. P., Daley, K. M., McCarty, T., Knoetig, S., and Corley, R. B. (2005) Reductions in I kappa B epsilon and changes in NF-kappa B activity during B lymphocyte differentiation. J. Immunol. 174, 983-991 (Pubitemid 40094294)
    • (2005) Journal of Immunology , vol.174 , Issue.2 , pp. 983-991
    • Doerre, S.1    Mesires, K.P.2    Daley, K.M.3    McCarty, T.4    Knoetig, S.5    Corley, R.B.6
  • 34
    • 0029664798 scopus 로고    scopus 로고
    • Activation of NF-kappaB/Rel by CD40 engagement induces the mouse germ line immunoglobulin Cgamma1 promoter
    • Lin, S. C., and Stavnezer, J. (1996) Activation of NF-kappaB/Rel by CD40 engagement induces the mouse germ line immunoglobulin Cgamma1 promoter. Mol. Cell. Biol. 16, 4591-4603
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4591-4603
    • Lin, S.C.1    Stavnezer, J.2
  • 36
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray data
    • Quackenbush, J. (2001) Computational analysis of microarray data. Nature Rev. Genet. 2, 418-427
    • (2001) Nature Rev. Genet. , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 37
    • 0033657261 scopus 로고    scopus 로고
    • Principal components analysis to summarize microarray experiments: Application to sporulation time series
    • Raychaudhuri, S., Stuart, J. M., and Altman, R. B. (2000) Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac. Symp. Biocomput. 455-466
    • (2000) Pac. Symp. Biocomput. , pp. 455-466
    • Raychaudhuri, S.1    Stuart, J.M.2    Altman, R.B.3
  • 38
    • 33645033645 scopus 로고    scopus 로고
    • Probing gene expression in live cells, one protein molecule at a time
    • Yu, J., Xiao, J., Ren, X., Lao, K., and Xie, X. S. (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311, 1600-1603
    • (2006) Science , vol.311 , pp. 1600-1603
    • Yu, J.1    Xiao, J.2    Ren, X.3    Lao, K.4    Xie, X.S.5
  • 39
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • DOI 10.1038/nature06965, PII NATURE06965
    • Chang, H. H., Hemberg, M., Barahona, M., Ingber, D. E., and Huang, S. (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453, 544-547 (Pubitemid 351733323)
    • (2008) Nature , vol.453 , Issue.7194 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 41
    • 0035883151 scopus 로고    scopus 로고
    • NF-κB signaling pathways in mammalian and insect innate immunity
    • DOI 10.1101/gad.909001
    • Silverman, N., and Maniatis, T. (2001) NF-kappaB signaling pathways in mammalian and insect innate immunity. Genes Dev. 15, 2321-2342 (Pubitemid 32899738)
    • (2001) Genes and Development , vol.15 , Issue.18 , pp. 2321-2342
    • Silverman, N.1    Maniatis, T.2
  • 42
    • 32944468017 scopus 로고    scopus 로고
    • The evolution of adaptive immune systems
    • Cooper, M. D., and Alder, M. N. (2006) The evolution of adaptive immune systems. Cell 124, 815-822
    • (2006) Cell , vol.124 , pp. 815-822
    • Cooper, M.D.1    Alder, M.N.2
  • 43
    • 9144233525 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information: Update
    • Sayers, E. W., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., Church, D. M., DiCuccio, M., Edgar, R., Federhen, S., Feolo, M., Geer, L. Y., Helmberg, W., Kapustin, Y., Landsman, D., Lipman, D. J., Madden, T. L., Maglott, D. R., Miller, V., Mizrachi, I., Ostell, J., Pruitt, K. D., Schuler, G. D., Sequeira, E., Sherry, S. T., Shumway, M., Sirotkin, K., Souvorov, A., Starchenko, G., Tatusova, T. A., Wagner, L., Yaschenko, E., and Ye, J. (2009) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37, D5-15 (Pubitemid 38081599)
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISS
    • Wheeler, D.L.1    Church, D.M.2    Edgar, R.3    Federhen, S.4    Helmberg, W.5    Madden, T.L.6    Pontius, J.U.7    Schuler, G.D.8    Schriml, L.M.9    Sequeira, E.10    Suzek, T.O.11    Tatusova, T.A.12    Wagner, L.13


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